Wall clock time and date at job start Sun Mar 29 2020 22:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30174 * 126.79868 * 2 1 4 4 O 1.20923 * 111.59753 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.57016 * 359.76675 * 4 3 2 6 6 C 1.50696 * 126.77542 * 180.28650 * 5 4 3 7 7 C 1.35447 * 106.44240 * 0.37818 * 5 4 3 8 8 C 1.50701 * 128.00343 * 179.91656 * 7 5 4 9 9 H 1.08997 * 109.47380 * 5.36669 * 8 7 5 10 10 C 1.53001 * 109.46917 * 245.37298 * 8 7 5 11 11 C 1.52993 * 109.47394 * 125.37435 * 8 7 5 12 12 N 1.46907 * 109.47304 * 184.99848 * 11 8 7 13 13 C 1.46896 * 111.00310 * 179.97438 * 12 11 8 14 14 C 1.50695 * 109.47267 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99954 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00102 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47271 * 89.99772 * 18 16 14 20 20 H 1.48501 * 109.46930 * 209.99750 * 18 16 14 21 21 H 1.48502 * 109.47202 * 329.99854 * 18 16 14 22 22 H 1.08992 * 109.47554 * 274.91806 * 1 2 3 23 23 H 1.09003 * 109.46664 * 34.91932 * 1 2 3 24 24 H 1.09003 * 109.46929 * 154.90829 * 1 2 3 25 25 H 1.09001 * 109.47390 * 265.02157 * 6 5 4 26 26 H 1.09001 * 109.47694 * 25.02402 * 6 5 4 27 27 H 1.08998 * 109.47056 * 145.02717 * 6 5 4 28 28 H 1.08996 * 109.47682 * 294.56441 * 10 8 7 29 29 H 1.09004 * 109.47006 * 54.56266 * 10 8 7 30 30 H 1.08996 * 109.47661 * 174.56050 * 10 8 7 31 31 H 1.08999 * 109.47091 * 304.99312 * 11 8 7 32 32 H 1.09004 * 109.47355 * 64.99899 * 11 8 7 33 33 H 1.00899 * 110.99525 * 303.95406 * 12 11 8 34 34 H 1.09001 * 109.47067 * 299.99992 * 13 12 11 35 35 H 1.09000 * 109.47013 * 59.99890 * 13 12 11 36 36 H 0.97001 * 120.00331 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6024 -0.6069 0.0060 6 6 4.9021 -1.3695 0.0143 7 6 2.3539 -1.1320 0.0005 8 6 1.9590 -2.5864 0.0015 9 1 2.8506 -3.2049 0.1036 10 6 1.2522 -2.9238 -1.3129 11 6 1.0133 -2.8573 1.1732 12 7 0.7233 -4.2956 1.2460 13 6 -0.1836 -4.5940 2.3624 14 6 -0.4579 -6.0751 2.4047 15 1 -0.0037 -6.7295 1.6754 16 6 -1.2880 -6.5951 3.3751 17 7 -1.5271 -7.8877 3.4123 18 14 -2.0731 -5.4634 4.6369 19 1 -3.3823 -4.9842 4.1254 20 1 -2.2794 -6.2053 5.9067 21 1 -1.1819 -4.3010 4.8818 22 1 -0.3634 0.0881 1.0238 23 1 -0.3633 0.8427 -0.5883 24 1 -0.3633 -0.9307 -0.4358 25 1 5.1747 -1.6341 -1.0074 26 1 5.6850 -0.7488 0.4501 27 1 4.7867 -2.2775 0.6062 28 1 0.3114 -2.3765 -1.3704 29 1 1.8891 -2.6406 -2.1510 30 1 1.0528 -3.9945 -1.3538 31 1 1.4836 -2.5341 2.1019 32 1 0.0844 -2.3064 1.0254 33 1 0.3459 -4.6329 0.3731 34 1 0.2788 -4.2828 3.2992 35 1 -1.1208 -4.0551 2.2233 36 1 -2.1114 -8.2535 4.0947 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591757132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:34 Heat of formation + Delta-G solvation = 43.109961 kcal Electronic energy + Delta-G solvation = -16963.152240 eV Core-core repulsion = 14257.111849 eV Total energy + Delta-G solvation = -2706.040391 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.90718 -37.47603 -34.78231 -33.71975 -32.60328 -31.27956 -28.79110 -27.73683 -27.47040 -25.16412 -22.82872 -21.10656 -20.26395 -20.05899 -17.64748 -16.91642 -16.61950 -15.48898 -14.98669 -14.26613 -14.03752 -13.67568 -13.55844 -13.31676 -13.16500 -13.01298 -12.80256 -12.72175 -12.42197 -12.19500 -11.82833 -11.45365 -11.35737 -10.97422 -10.74528 -10.51977 -10.32545 -9.85124 -9.74927 -9.31453 -9.05140 -8.62301 -7.52411 -6.08342 -4.06431 1.46308 2.22144 3.11124 3.26354 3.34372 3.37063 4.16029 4.39855 4.44703 4.74320 4.84916 5.14439 5.19268 5.23336 5.25931 5.30211 5.37724 5.42755 5.46226 5.56793 5.66120 5.71633 5.90857 5.97022 6.00489 6.07690 6.17820 6.34532 6.45713 6.75746 6.98281 7.58092 7.85106 8.29141 8.29899 8.61919 8.99435 9.53678 11.04915 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.005223 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.566794 B = 5359.482203 C = 5616.825694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.027 3.973 3 N -0.373 5.373 4 O 0.092 5.908 5 C -0.037 4.037 6 C -0.073 4.073 7 C -0.183 4.183 8 C -0.013 4.013 9 H 0.092 0.908 10 C -0.146 4.146 11 C 0.063 3.937 12 N -0.680 5.680 13 C 0.164 3.836 14 C -0.516 4.516 15 H 0.079 0.921 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.267 1.267 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.335 0.665 34 H 0.026 0.974 35 H -0.021 1.021 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.637 14.379 -8.364 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 N -0.080 5.080 4 O 0.027 5.973 5 C -0.100 4.100 6 C -0.130 4.130 7 C -0.187 4.187 8 C -0.032 4.032 9 H 0.110 0.890 10 C -0.204 4.204 11 C -0.067 4.067 12 N -0.311 5.311 13 C 0.037 3.963 14 C -0.555 4.555 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.192 1.192 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.153 0.847 34 H 0.044 0.956 35 H -0.003 1.003 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.889 15.408 -7.890 19.460 hybrid contribution -1.448 0.128 0.481 1.531 sum 7.442 15.536 -7.409 18.752 Atomic orbital electron populations 1.20312 0.86247 1.03733 1.03465 1.23401 0.98816 0.88515 1.02400 1.73799 0.89360 1.24051 1.20794 1.84765 1.21617 1.22649 1.68239 1.24239 0.98302 0.83669 1.03820 1.20338 0.89874 0.98793 1.04010 1.21042 0.91390 0.97631 1.08639 1.19517 1.00088 0.87649 0.95943 0.89007 1.21865 1.00155 1.02368 0.95973 1.21990 0.96733 0.91052 0.96971 1.60498 1.50911 1.11334 1.08336 1.19997 0.88948 0.97312 0.90085 1.21055 1.28151 0.90779 1.15474 0.90256 1.24900 0.96110 0.94922 0.97350 1.69896 1.37578 1.11431 1.34970 0.86833 0.80011 0.81273 0.81442 1.20330 1.21111 1.19199 0.90162 0.90813 0.89589 0.89542 0.90084 0.88686 0.92712 0.92837 0.91056 0.91822 0.95737 0.84668 0.95623 1.00325 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.18 36.01 0.33 -0.60 16 2 C 0.03 0.38 7.23 -82.10 -0.59 -0.22 16 3 N -0.37 -5.52 12.07 33.42 0.40 -5.12 16 4 O 0.09 1.24 11.20 17.17 0.19 1.43 16 5 C -0.04 -0.44 7.49 -35.31 -0.26 -0.70 16 6 C -0.07 -0.58 10.12 36.00 0.36 -0.21 16 7 C -0.18 -2.39 4.94 -104.43 -0.52 -2.91 16 8 C -0.01 -0.17 2.86 -91.77 -0.26 -0.43 16 9 H 0.09 1.18 7.23 -51.93 -0.38 0.81 16 10 C -0.15 -1.74 8.78 37.16 0.33 -1.42 16 11 C 0.06 1.02 4.92 -3.82 -0.02 1.00 16 12 N -0.68 -13.52 6.49 -115.06 -0.75 -14.27 16 13 C 0.16 3.95 4.51 -4.98 -0.02 3.93 16 14 C -0.52 -14.63 9.87 -34.44 -0.34 -14.97 16 15 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 18 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.09 0.95 5.18 -51.93 -0.27 0.68 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.74 7.53 -51.93 -0.39 0.35 16 28 H 0.05 0.63 6.09 -51.93 -0.32 0.32 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.87 6.93 -51.93 -0.36 0.51 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.02 0.39 6.08 -51.93 -0.32 0.07 16 33 H 0.34 6.35 7.10 -39.29 -0.28 6.07 16 34 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 35 H -0.02 -0.50 7.57 -51.93 -0.39 -0.89 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 293.42 15.07 4.42 4.42 Total: -1.00 -31.62 293.42 -5.92 -37.54 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.20 Total: 0.48 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -1.09 Total: -14.63 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.43 Total: -46.09 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.19 Total: 1.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.62 -5.92 -37.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.648 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds