Wall clock time and date at job start Sun Mar 29 2020 22:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30174 * 126.79868 * 2 1 4 4 O 1.20923 * 111.59753 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.57016 * 359.76675 * 4 3 2 6 6 C 1.50696 * 126.77542 * 180.28650 * 5 4 3 7 7 C 1.35447 * 106.44240 * 0.37818 * 5 4 3 8 8 C 1.50701 * 128.00343 * 179.91656 * 7 5 4 9 9 H 1.08997 * 109.47380 * 5.36669 * 8 7 5 10 10 C 1.53001 * 109.46917 * 245.37298 * 8 7 5 11 11 C 1.52993 * 109.47394 * 125.37435 * 8 7 5 12 12 N 1.46907 * 109.47304 * 184.99848 * 11 8 7 13 13 C 1.46896 * 111.00310 * 179.97438 * 12 11 8 14 14 C 1.50695 * 109.47267 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99954 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00102 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47271 * 89.99772 * 18 16 14 20 20 H 1.48501 * 109.46930 * 209.99750 * 18 16 14 21 21 H 1.48502 * 109.47202 * 329.99854 * 18 16 14 22 22 H 1.08992 * 109.47554 * 274.91806 * 1 2 3 23 23 H 1.09003 * 109.46664 * 34.91932 * 1 2 3 24 24 H 1.09003 * 109.46929 * 154.90829 * 1 2 3 25 25 H 1.09001 * 109.47390 * 265.02157 * 6 5 4 26 26 H 1.09001 * 109.47694 * 25.02402 * 6 5 4 27 27 H 1.08998 * 109.47056 * 145.02717 * 6 5 4 28 28 H 1.08996 * 109.47682 * 294.56441 * 10 8 7 29 29 H 1.09004 * 109.47006 * 54.56266 * 10 8 7 30 30 H 1.08996 * 109.47661 * 174.56050 * 10 8 7 31 31 H 1.08999 * 109.47091 * 304.99312 * 11 8 7 32 32 H 1.09004 * 109.47355 * 64.99899 * 11 8 7 33 33 H 1.00899 * 110.99525 * 303.95406 * 12 11 8 34 34 H 1.09001 * 109.47067 * 299.99992 * 13 12 11 35 35 H 1.09000 * 109.47013 * 59.99890 * 13 12 11 36 36 H 0.97001 * 120.00331 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6024 -0.6069 0.0060 6 6 4.9021 -1.3695 0.0143 7 6 2.3539 -1.1320 0.0005 8 6 1.9590 -2.5864 0.0015 9 1 2.8506 -3.2049 0.1036 10 6 1.2522 -2.9238 -1.3129 11 6 1.0133 -2.8573 1.1732 12 7 0.7233 -4.2956 1.2460 13 6 -0.1836 -4.5940 2.3624 14 6 -0.4579 -6.0751 2.4047 15 1 -0.0037 -6.7295 1.6754 16 6 -1.2880 -6.5951 3.3751 17 7 -1.5271 -7.8877 3.4123 18 14 -2.0731 -5.4634 4.6369 19 1 -3.3823 -4.9842 4.1254 20 1 -2.2794 -6.2053 5.9067 21 1 -1.1819 -4.3010 4.8818 22 1 -0.3634 0.0881 1.0238 23 1 -0.3633 0.8427 -0.5883 24 1 -0.3633 -0.9307 -0.4358 25 1 5.1747 -1.6341 -1.0074 26 1 5.6850 -0.7488 0.4501 27 1 4.7867 -2.2775 0.6062 28 1 0.3114 -2.3765 -1.3704 29 1 1.8891 -2.6406 -2.1510 30 1 1.0528 -3.9945 -1.3538 31 1 1.4836 -2.5341 2.1019 32 1 0.0844 -2.3064 1.0254 33 1 0.3459 -4.6329 0.3731 34 1 0.2788 -4.2828 3.2992 35 1 -1.1208 -4.0551 2.2233 36 1 -2.1114 -8.2535 4.0947 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:34 Heat of formation + Delta-G solvation = 21.768328 kcal Electronic energy + Delta-G solvation = -16964.077683 eV Core-core repulsion = 14257.111849 eV Total energy + Delta-G solvation = -2706.965834 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.91091 -38.69753 -36.23844 -34.80235 -34.36144 -32.61135 -29.75273 -29.32702 -28.43009 -26.48923 -24.15018 -22.91884 -21.35107 -21.03338 -18.97336 -18.64290 -17.71471 -16.94442 -16.44905 -15.83368 -15.19714 -15.03754 -14.71648 -14.52630 -14.33917 -13.98290 -13.88020 -13.75637 -13.62850 -13.45368 -13.24522 -12.77361 -12.66784 -12.32350 -12.23531 -11.96728 -11.79163 -11.50634 -11.38924 -10.81193 -10.78598 -10.02651 -9.13936 -8.29715 -6.33789 0.51311 1.21591 1.34235 1.36585 1.47273 2.22213 2.33868 3.04494 3.16656 3.50347 3.60584 3.80479 4.08970 4.11019 4.29644 4.40607 4.44477 4.57011 4.66115 4.73056 4.75675 4.78107 4.80156 4.91107 4.95864 5.03671 5.08138 5.13293 5.25151 5.27172 5.45811 5.54805 5.94940 6.56035 6.67364 6.78577 7.31375 7.31560 8.86864 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.005223 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.566794 B = 5359.482203 C = 5616.825694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.020 3.980 3 N -0.400 5.400 4 O 0.084 5.916 5 C -0.025 4.025 6 C -0.074 4.074 7 C -0.202 4.202 8 C 0.000 4.000 9 H 0.096 0.904 10 C -0.144 4.144 11 C 0.065 3.935 12 N -0.685 5.685 13 C 0.174 3.826 14 C -0.526 4.526 15 H 0.041 0.959 16 C 0.010 3.990 17 N -0.946 5.946 18 Si 0.947 3.053 19 H -0.265 1.265 20 H -0.281 1.281 21 H -0.253 1.253 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.032 0.968 33 H 0.340 0.660 34 H 0.021 0.979 35 H -0.014 1.014 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.017 15.901 -8.364 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 N -0.108 5.108 4 O 0.021 5.979 5 C -0.088 4.088 6 C -0.131 4.131 7 C -0.207 4.207 8 C -0.019 4.019 9 H 0.114 0.886 10 C -0.202 4.202 11 C -0.064 4.064 12 N -0.317 5.317 13 C 0.045 3.955 14 C -0.565 4.565 15 H 0.059 0.941 16 C -0.188 4.188 17 N -0.587 5.587 18 Si 0.771 3.229 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.177 1.177 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.109 0.891 25 H 0.125 0.875 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.159 0.841 34 H 0.039 0.961 35 H 0.003 0.997 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.294 16.947 -7.911 20.885 hybrid contribution -1.480 -0.388 0.407 1.583 sum 7.814 16.559 -7.504 19.788 Atomic orbital electron populations 1.20385 0.85207 1.04487 1.03792 1.23769 0.99726 0.88591 1.01781 1.73791 0.89890 1.24846 1.22316 1.84738 1.21271 1.23500 1.68354 1.24906 0.99470 0.83110 1.01362 1.20564 0.88409 0.98607 1.05530 1.21033 0.91950 0.97242 1.10440 1.19344 0.99513 0.87962 0.95119 0.88590 1.21850 1.00507 1.02013 0.95785 1.22018 0.97766 0.88572 0.98041 1.60364 1.49714 1.14055 1.07520 1.19742 0.89915 0.94352 0.91452 1.21336 1.27745 0.92779 1.14596 0.94059 1.25831 0.96758 0.96474 0.99705 1.70043 1.38754 1.13622 1.36241 0.85715 0.79439 0.79349 0.78417 1.19043 1.20678 1.17703 0.90049 0.89753 0.89090 0.87499 0.88332 0.88324 0.92429 0.91426 0.91605 0.92775 0.94975 0.84108 0.96067 0.99662 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.18 71.24 0.65 -1.12 16 2 C 0.02 0.52 7.23 43.58 0.31 0.83 16 3 N -0.40 -11.37 12.07 -49.58 -0.60 -11.97 16 4 O 0.08 2.15 11.20 71.61 0.80 2.95 16 5 C -0.03 -0.54 7.49 25.04 0.19 -0.36 16 6 C -0.07 -0.96 10.12 71.23 0.72 -0.24 16 7 C -0.20 -4.92 4.94 -19.74 -0.10 -5.02 16 8 C 0.00 0.00 2.86 -11.54 -0.03 -0.04 16 9 H 0.10 2.28 7.23 -2.39 -0.02 2.26 16 10 C -0.14 -3.16 8.78 71.98 0.63 -2.53 16 11 C 0.07 2.03 4.92 86.30 0.42 2.45 16 12 N -0.68 -26.63 6.49 -517.94 -3.36 -30.00 16 13 C 0.17 8.20 4.51 85.56 0.39 8.58 16 14 C -0.53 -30.13 9.87 25.60 0.25 -29.88 16 15 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 16 C 0.01 0.58 5.47 84.65 0.46 1.04 16 17 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 18 Si 0.95 43.82 27.47 68.60 1.88 45.70 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 22 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.09 1.85 5.18 -2.39 -0.01 1.84 16 25 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 1.26 7.53 -2.39 -0.02 1.25 16 28 H 0.06 1.22 6.09 -2.39 -0.01 1.21 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.07 1.51 6.93 -2.39 -0.02 1.49 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.03 0.96 6.08 -2.39 -0.01 0.94 16 33 H 0.34 12.67 7.10 -89.69 -0.64 12.04 16 34 H 0.02 1.02 7.20 -2.39 -0.02 1.01 16 35 H -0.01 -0.65 7.57 -2.39 -0.02 -0.67 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -67.83 293.42 3.32 -64.51 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.39 Total: 13.45 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: 3.90 Total: -26.27 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -3.66 Total: -100.33 kcal Atomic # 8 Polarization: 2.15 SS G_CDS: 0.80 Total: 2.95 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -67.83 3.32 -64.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.280 kcal (2) G-P(sol) polarization free energy of solvation -67.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds