Wall clock time and date at job start Sun Mar 29 2020 22:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30177 * 126.80854 * 2 1 4 4 O 1.20918 * 111.60616 * 180.26021 * 3 2 1 5 5 C 1.34034 * 111.56789 * 359.74296 * 4 3 2 6 6 C 1.50703 * 126.77608 * 179.97438 * 5 4 3 7 7 C 1.35454 * 106.44678 * 0.02562 * 5 4 3 8 8 C 1.50704 * 128.00500 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.47381 * 359.97438 * 8 7 5 10 10 C 1.53009 * 109.46972 * 119.99334 * 8 7 5 11 11 C 1.52993 * 109.47029 * 239.99325 * 8 7 5 12 12 N 1.46905 * 109.47039 * 175.00250 * 11 8 7 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 8 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00162 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99982 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99630 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46926 * 90.00445 * 18 16 14 20 20 H 1.48506 * 109.46987 * 209.99731 * 18 16 14 21 21 H 1.48494 * 109.47527 * 330.00217 * 18 16 14 22 22 H 1.09003 * 109.46356 * 270.16269 * 1 2 3 23 23 H 1.09001 * 109.47086 * 30.15516 * 1 2 3 24 24 H 1.08995 * 109.47412 * 150.16180 * 1 2 3 25 25 H 1.09001 * 109.47239 * 270.00239 * 6 5 4 26 26 H 1.08997 * 109.46931 * 30.00803 * 6 5 4 27 27 H 1.09004 * 109.46653 * 150.00547 * 6 5 4 28 28 H 1.08995 * 109.47462 * 300.00328 * 10 8 7 29 29 H 1.08999 * 109.46618 * 60.00084 * 10 8 7 30 30 H 1.08995 * 109.46725 * 179.97438 * 10 8 7 31 31 H 1.09001 * 109.47393 * 55.00531 * 11 8 7 32 32 H 1.08998 * 109.47408 * 295.00177 * 11 8 7 33 33 H 1.00901 * 110.99869 * 56.04956 * 12 11 8 34 34 H 1.09004 * 109.47031 * 299.99620 * 13 12 11 35 35 H 1.08995 * 109.47111 * 59.99900 * 13 12 11 36 36 H 0.97002 * 119.99560 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7252 -0.0051 5 6 3.6024 -0.6069 -0.0037 6 6 4.9021 -1.3697 -0.0092 7 6 2.3538 -1.1321 0.0026 8 6 1.9589 -2.5864 0.0061 9 1 2.8554 -3.2064 0.0022 10 6 1.1350 -2.8882 1.2596 11 6 1.1235 -2.8910 -1.2389 12 7 0.8395 -4.3311 -1.2978 13 6 0.0376 -4.6615 -2.4835 14 6 -0.2336 -6.1436 -2.5095 15 1 0.1516 -6.7769 -1.7240 16 6 -0.9725 -6.6914 -3.5366 17 7 -1.2088 -7.9849 -3.5595 18 14 -1.6381 -5.5961 -4.8956 19 1 -0.6411 -5.5072 -5.9926 20 1 -2.9021 -6.1719 -5.4210 21 1 -1.9001 -4.2386 -4.3537 22 1 -0.3632 0.0029 1.0277 23 1 -0.3633 0.8886 -0.5162 24 1 -0.3634 -0.8914 -0.5113 25 1 5.2101 -1.5553 -1.0382 26 1 5.6685 -0.7853 0.4997 27 1 4.7675 -2.3204 0.5068 28 1 1.7301 -2.6712 2.1465 29 1 0.2385 -2.2682 1.2629 30 1 0.8490 -3.9400 1.2618 31 1 1.6767 -2.5930 -2.1296 32 1 0.1857 -2.3374 -1.1916 33 1 0.3838 -4.6446 -0.4539 34 1 -0.9077 -4.1202 -2.4452 35 1 0.5837 -4.3758 -3.3826 36 1 -1.7284 -8.3703 -4.2823 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:36 Heat of formation + Delta-G solvation = 22.908216 kcal Electronic energy + Delta-G solvation = -16961.156543 eV Core-core repulsion = 14254.240138 eV Total energy + Delta-G solvation = -2706.916405 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.91079 -38.70521 -36.24173 -34.80285 -34.35932 -32.60589 -29.75085 -29.33214 -28.42544 -26.50350 -24.15090 -22.91934 -21.35796 -21.03396 -18.98142 -18.63644 -17.71476 -16.99694 -16.44880 -15.82033 -15.19340 -15.00735 -14.77688 -14.48610 -14.35622 -13.99119 -13.88351 -13.81857 -13.59046 -13.38433 -13.23842 -12.77408 -12.58396 -12.33685 -12.27044 -11.97438 -11.81407 -11.53550 -11.40554 -10.80603 -10.77641 -10.02739 -9.12456 -8.29780 -6.33883 0.51216 1.21455 1.35366 1.35815 1.46721 2.22004 2.33723 3.04513 3.16826 3.50558 3.59994 3.80540 4.07812 4.11113 4.27235 4.38805 4.44946 4.56319 4.68851 4.71629 4.73627 4.79034 4.81590 4.90111 4.98754 5.03543 5.08338 5.17175 5.24667 5.26935 5.44592 5.54315 5.94634 6.55500 6.66930 6.78282 7.31252 7.31566 8.86757 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033906 B = 0.005202 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.608134 B = 5381.144952 C = 5586.294122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.020 3.980 3 N -0.400 5.400 4 O 0.083 5.917 5 C -0.025 4.025 6 C -0.074 4.074 7 C -0.202 4.202 8 C 0.000 4.000 9 H 0.096 0.904 10 C -0.145 4.145 11 C 0.065 3.935 12 N -0.684 5.684 13 C 0.174 3.826 14 C -0.526 4.526 15 H 0.041 0.959 16 C 0.010 3.990 17 N -0.946 5.946 18 Si 0.947 3.053 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.252 1.252 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.031 0.969 33 H 0.340 0.660 34 H -0.013 1.013 35 H 0.021 0.979 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.225 16.142 8.505 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.138 4.138 3 N -0.109 5.109 4 O 0.021 5.979 5 C -0.088 4.088 6 C -0.131 4.131 7 C -0.207 4.207 8 C -0.019 4.019 9 H 0.114 0.886 10 C -0.203 4.203 11 C -0.064 4.064 12 N -0.316 5.316 13 C 0.045 3.955 14 C -0.565 4.565 15 H 0.059 0.941 16 C -0.188 4.188 17 N -0.586 5.586 18 Si 0.770 3.230 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.176 1.176 22 H 0.113 0.887 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.159 0.841 34 H 0.004 0.996 35 H 0.039 0.961 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.538 17.176 8.110 20.825 hybrid contribution -1.410 -0.407 -0.532 1.561 sum 7.128 16.769 7.578 19.734 Atomic orbital electron populations 1.20418 0.85159 1.04120 1.04311 1.23774 0.99752 0.88563 1.01722 1.73793 0.89881 1.24850 1.22330 1.84734 1.21289 1.23487 1.68380 1.24909 0.99479 0.83124 1.01331 1.20565 0.88506 0.98777 1.05282 1.21039 0.91934 0.97240 1.10467 1.19343 0.99808 0.87936 0.94833 0.88573 1.21851 0.99971 1.02019 0.96421 1.22028 0.98129 0.88453 0.97803 1.60370 1.51426 1.14114 1.05720 1.19743 0.90767 0.94286 0.90694 1.21334 1.32585 0.92929 1.09623 0.94052 1.25830 0.96075 0.96279 1.00567 1.70045 1.41367 1.12904 1.34329 0.85720 0.78222 0.79736 0.79276 1.19245 1.20603 1.17558 0.88743 0.90295 0.89653 0.88372 0.88022 0.87825 0.91434 0.92311 0.91778 0.92575 0.95097 0.84077 0.99559 0.96123 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.13 71.24 0.65 -1.13 16 2 C 0.02 0.53 7.20 43.58 0.31 0.84 16 3 N -0.40 -11.36 12.07 -49.56 -0.60 -11.95 16 4 O 0.08 2.14 11.20 71.70 0.80 2.94 16 5 C -0.03 -0.55 7.49 25.04 0.19 -0.36 16 6 C -0.07 -0.99 10.17 71.24 0.72 -0.26 16 7 C -0.20 -4.93 4.93 -19.73 -0.10 -5.02 16 8 C 0.00 0.00 2.89 -11.54 -0.03 -0.03 16 9 H 0.10 2.27 7.13 -2.39 -0.02 2.26 16 10 C -0.15 -3.20 8.87 71.99 0.64 -2.56 16 11 C 0.07 2.01 4.99 86.30 0.43 2.45 16 12 N -0.68 -26.60 6.49 -517.93 -3.36 -29.96 16 13 C 0.17 8.18 4.51 85.56 0.39 8.56 16 14 C -0.53 -30.12 9.87 25.60 0.25 -29.87 16 15 H 0.04 2.61 8.06 -2.91 -0.02 2.58 16 16 C 0.01 0.59 5.47 84.66 0.46 1.05 16 17 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 18 Si 0.95 43.79 27.47 68.60 1.88 45.68 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 22 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.08 1.87 5.35 -2.39 -0.01 1.86 16 25 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 1.20 7.39 -2.39 -0.02 1.18 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.24 6.75 -2.39 -0.02 1.22 16 30 H 0.06 1.50 6.68 -2.39 -0.02 1.48 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 0.93 5.51 -2.39 -0.01 0.92 16 33 H 0.34 12.70 6.98 -89.69 -0.63 12.08 16 34 H -0.01 -0.61 7.20 -2.39 -0.02 -0.63 16 35 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -67.74 293.20 3.34 -64.39 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.40 Total: 13.56 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 3.92 Total: -26.33 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -3.66 Total: -100.25 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.80 Total: 2.94 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.68 kcal Total: -67.74 3.34 -64.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.303 kcal (2) G-P(sol) polarization free energy of solvation -67.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds