Wall clock time and date at job start Sun Mar 29 2020 22:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47446 * 53.50931 * 3 2 1 5 5 C 1.53004 * 109.47583 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47231 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46697 * 180.02562 * 6 5 4 8 8 C 1.48720 * 111.01831 * 74.48907 * 7 6 5 9 9 C 1.54381 * 104.51692 * 158.96284 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42906 * 110.32239 * 240.94794 * 10 9 8 12 12 C 1.50697 * 110.32628 * 118.84329 * 10 9 8 13 13 H 1.07995 * 120.00073 * 241.44522 * 12 10 9 14 14 C 1.37883 * 119.99811 * 61.45328 * 12 10 9 15 15 N 1.31514 * 119.99933 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99722 * 179.97438 * 14 12 10 17 17 H 1.48508 * 109.46935 * 90.00162 * 16 14 12 18 18 H 1.48500 * 109.47103 * 209.99421 * 16 14 12 19 19 H 1.48498 * 109.47343 * 330.00155 * 16 14 12 20 20 C 1.48567 * 110.99718 * 189.99889 * 7 6 5 21 21 H 1.08997 * 109.47538 * 293.50352 * 3 2 1 22 22 H 1.09004 * 109.47171 * 173.50485 * 3 2 1 23 23 H 1.09001 * 109.47611 * 59.99506 * 4 3 2 24 24 H 1.09002 * 109.47084 * 299.99876 * 4 3 2 25 25 H 1.09001 * 109.46812 * 59.99308 * 5 4 3 26 26 H 1.08997 * 109.46710 * 299.99867 * 5 4 3 27 27 H 1.08997 * 109.47422 * 59.99616 * 6 5 4 28 28 H 1.08999 * 109.46632 * 299.99620 * 6 5 4 29 29 H 1.09004 * 110.38960 * 40.24251 * 8 7 6 30 30 H 1.08996 * 110.50963 * 277.74694 * 8 7 6 31 31 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 32 32 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 33 33 H 0.96695 * 113.99929 * 298.55053 * 11 10 9 34 34 H 0.97002 * 119.99478 * 180.02562 * 15 14 12 35 35 H 1.08999 * 110.41133 * 82.17552 * 20 7 6 36 36 H 1.09001 * 110.41003 * 319.73948 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1184 -0.8569 -1.1596 5 6 4.6484 -0.8557 -1.1601 6 6 5.1588 -1.7128 -2.3201 7 7 6.6278 -1.7121 -2.3201 8 6 7.1616 -2.5670 -1.2264 9 6 8.6026 -2.9033 -1.6664 10 6 8.6026 -2.7467 -3.2010 11 8 8.9338 -3.9881 -3.8266 12 6 9.5768 -1.6752 -3.6179 13 1 9.2237 -0.7972 -4.1382 14 6 10.9189 -1.8160 -3.3352 15 7 11.3489 -2.8855 -2.7021 16 14 12.1266 -0.4881 -3.8526 17 1 12.2567 0.5140 -2.7643 18 1 13.4519 -1.1018 -4.1212 19 1 11.6313 0.1791 -5.0833 20 6 7.1605 -2.3300 -3.5617 21 1 2.9715 -0.4090 0.9423 22 1 2.9708 1.0219 -0.1163 23 1 2.7549 -0.4473 -2.1021 24 1 2.7555 -1.8782 -1.0435 25 1 5.0123 -1.2651 -0.2177 26 1 5.0108 0.1656 -1.2765 27 1 4.7949 -1.3030 -3.2623 28 1 4.7963 -2.7342 -2.2041 29 1 6.5702 -3.4779 -1.1334 30 1 7.1698 -2.0201 -0.2836 31 1 8.8536 -3.9274 -1.3903 32 1 9.3086 -2.2063 -1.2148 33 1 9.8131 -4.3205 -3.5999 34 1 12.2931 -2.9843 -2.5029 35 1 7.1666 -1.6044 -4.3750 36 1 6.5693 -3.2040 -3.8352 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:25 Heat of formation + Delta-G solvation = -35.756420 kcal Electronic energy + Delta-G solvation = -16745.636059 eV Core-core repulsion = 14036.175765 eV Total energy + Delta-G solvation = -2709.460294 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.49442 -37.24132 -35.60332 -34.11563 -32.07823 -30.75463 -28.29947 -27.63200 -24.78251 -23.26639 -21.39482 -20.12744 -19.33533 -17.58745 -16.99739 -16.00491 -15.41609 -14.86323 -14.59698 -14.16590 -14.04411 -13.71356 -13.39118 -13.04346 -12.55727 -12.31072 -12.28941 -11.97715 -11.62099 -11.37876 -11.30712 -11.15805 -10.91641 -10.80790 -10.57102 -10.47431 -10.32615 -10.24350 -9.89000 -9.01334 -8.54853 -8.10513 -7.81884 -6.14476 -4.19898 2.54990 2.58578 3.27229 3.34088 3.38416 3.75966 4.36878 4.49365 4.75139 4.81459 5.12577 5.14529 5.26125 5.47073 5.50223 5.65311 5.74748 5.81142 5.88547 5.98577 6.10147 6.20294 6.29927 6.30938 6.46204 6.53583 6.88901 7.07762 7.24112 7.35659 7.58161 7.68351 7.73877 7.88219 8.24525 8.82665 9.44670 9.53546 10.92994 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042157 B = 0.004461 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.018295 B = 6275.494032 C = 6550.460191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.210 3.790 3 C -0.027 4.027 4 C -0.115 4.115 5 C -0.112 4.112 6 C 0.043 3.957 7 N -0.502 5.502 8 C 0.033 3.967 9 C -0.122 4.122 10 C 0.248 3.752 11 O -0.596 6.596 12 C -0.518 4.518 13 H 0.062 0.938 14 C 0.065 3.935 15 N -0.901 5.901 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.053 3.947 21 H 0.109 0.891 22 H 0.111 0.889 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.382 0.618 34 H 0.265 0.735 35 H 0.076 0.924 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 2.967 4.907 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.108 4.108 3 C -0.067 4.067 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.086 4.086 7 N -0.226 5.226 8 C -0.095 4.095 9 C -0.160 4.160 10 C 0.208 3.792 11 O -0.405 6.405 12 C -0.556 4.556 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.541 5.541 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.075 4.075 21 H 0.127 0.873 22 H 0.129 0.871 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.232 0.768 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -11.602 3.518 4.771 13.029 hybrid contribution 1.442 -0.221 0.015 1.459 sum -10.160 3.297 4.786 11.705 Atomic orbital electron populations 1.81225 1.13288 1.09086 1.08937 1.29401 0.95502 0.92922 0.92958 1.19387 0.81050 1.04019 1.02283 1.21541 0.96841 0.99850 0.97236 1.21507 0.92489 1.01776 0.99186 1.22243 0.89812 0.97943 0.98602 1.65309 1.05503 1.48149 1.03620 1.23194 0.97535 0.93885 0.94900 1.22854 0.93079 1.00280 0.99830 1.19266 0.89599 0.82828 0.87494 1.86084 1.39735 1.40334 1.74299 1.21653 0.91911 1.05058 1.36995 0.91986 1.25012 0.98436 0.95876 0.94294 1.69699 1.15578 1.27622 1.41248 0.86473 0.80091 0.81637 0.79051 1.20604 1.21293 1.19850 1.22974 0.96245 0.96334 0.91910 0.87288 0.87144 0.91041 0.91291 0.91537 0.90519 0.91307 0.95252 0.95439 0.91565 0.93196 0.90650 0.76761 0.92511 0.90579 0.95229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.70 18.54 42.15 0.78 -4.92 16 2 C 0.21 1.96 15.43 -20.76 -0.32 1.64 16 3 C -0.03 -0.16 5.70 -29.52 -0.17 -0.33 16 4 C -0.12 -0.87 5.17 -26.73 -0.14 -1.01 16 5 C -0.11 -1.12 5.33 -26.73 -0.14 -1.27 16 6 C 0.04 0.59 4.83 -3.82 -0.02 0.57 16 7 N -0.50 -9.19 5.34 -229.83 -1.23 -10.41 16 8 C 0.03 0.60 5.93 -2.09 -0.01 0.59 16 9 C -0.12 -2.77 5.55 -25.35 -0.14 -2.91 16 10 C 0.25 6.10 1.05 -90.39 -0.10 6.00 16 11 O -0.60 -15.44 12.94 -35.23 -0.46 -15.90 16 12 C -0.52 -13.83 8.10 -34.44 -0.28 -14.11 16 13 H 0.06 1.67 7.53 -52.49 -0.40 1.27 16 14 C 0.06 1.71 5.02 -17.82 -0.09 1.62 16 15 N -0.90 -23.95 10.81 55.43 0.60 -23.35 16 16 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.05 1.13 5.74 -2.18 -0.01 1.12 16 21 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.66 7.47 -51.93 -0.39 0.27 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.03 0.40 7.77 -51.93 -0.40 0.00 16 29 H 0.03 0.48 7.75 -51.93 -0.40 0.08 16 30 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 31 H 0.05 1.15 7.98 -51.93 -0.41 0.73 16 32 H 0.07 1.87 7.23 -51.93 -0.38 1.50 16 33 H 0.38 10.01 7.32 45.56 0.33 10.34 16 34 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.08 1.63 7.67 -51.93 -0.40 1.23 16 36 H 0.03 0.62 7.94 -51.93 -0.41 0.20 16 LS Contribution 299.97 15.07 4.52 4.52 Total: -1.00 -29.43 299.97 -7.15 -36.59 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.93 Total: 5.87 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -1.42 Total: -8.07 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.15 Total: -38.68 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.46 Total: -15.90 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.43 -7.15 -36.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.831 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds