Wall clock time and date at job start Sun Mar 29 2020 22:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47446 * 53.50931 * 3 2 1 5 5 C 1.53004 * 109.47583 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47231 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46697 * 180.02562 * 6 5 4 8 8 C 1.48720 * 111.01831 * 74.48907 * 7 6 5 9 9 C 1.54381 * 104.51692 * 158.96284 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42906 * 110.32239 * 240.94794 * 10 9 8 12 12 C 1.50697 * 110.32628 * 118.84329 * 10 9 8 13 13 H 1.07995 * 120.00073 * 241.44522 * 12 10 9 14 14 C 1.37883 * 119.99811 * 61.45328 * 12 10 9 15 15 N 1.31514 * 119.99933 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99722 * 179.97438 * 14 12 10 17 17 H 1.48508 * 109.46935 * 90.00162 * 16 14 12 18 18 H 1.48500 * 109.47103 * 209.99421 * 16 14 12 19 19 H 1.48498 * 109.47343 * 330.00155 * 16 14 12 20 20 C 1.48567 * 110.99718 * 189.99889 * 7 6 5 21 21 H 1.08997 * 109.47538 * 293.50352 * 3 2 1 22 22 H 1.09004 * 109.47171 * 173.50485 * 3 2 1 23 23 H 1.09001 * 109.47611 * 59.99506 * 4 3 2 24 24 H 1.09002 * 109.47084 * 299.99876 * 4 3 2 25 25 H 1.09001 * 109.46812 * 59.99308 * 5 4 3 26 26 H 1.08997 * 109.46710 * 299.99867 * 5 4 3 27 27 H 1.08997 * 109.47422 * 59.99616 * 6 5 4 28 28 H 1.08999 * 109.46632 * 299.99620 * 6 5 4 29 29 H 1.09004 * 110.38960 * 40.24251 * 8 7 6 30 30 H 1.08996 * 110.50963 * 277.74694 * 8 7 6 31 31 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 32 32 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 33 33 H 0.96695 * 113.99929 * 298.55053 * 11 10 9 34 34 H 0.97002 * 119.99478 * 180.02562 * 15 14 12 35 35 H 1.08999 * 110.41133 * 82.17552 * 20 7 6 36 36 H 1.09001 * 110.41003 * 319.73948 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1184 -0.8569 -1.1596 5 6 4.6484 -0.8557 -1.1601 6 6 5.1588 -1.7128 -2.3201 7 7 6.6278 -1.7121 -2.3201 8 6 7.1616 -2.5670 -1.2264 9 6 8.6026 -2.9033 -1.6664 10 6 8.6026 -2.7467 -3.2010 11 8 8.9338 -3.9881 -3.8266 12 6 9.5768 -1.6752 -3.6179 13 1 9.2237 -0.7972 -4.1382 14 6 10.9189 -1.8160 -3.3352 15 7 11.3489 -2.8855 -2.7021 16 14 12.1266 -0.4881 -3.8526 17 1 12.2567 0.5140 -2.7643 18 1 13.4519 -1.1018 -4.1212 19 1 11.6313 0.1791 -5.0833 20 6 7.1605 -2.3300 -3.5617 21 1 2.9715 -0.4090 0.9423 22 1 2.9708 1.0219 -0.1163 23 1 2.7549 -0.4473 -2.1021 24 1 2.7555 -1.8782 -1.0435 25 1 5.0123 -1.2651 -0.2177 26 1 5.0108 0.1656 -1.2765 27 1 4.7949 -1.3030 -3.2623 28 1 4.7963 -2.7342 -2.2041 29 1 6.5702 -3.4779 -1.1334 30 1 7.1698 -2.0201 -0.2836 31 1 8.8536 -3.9274 -1.3903 32 1 9.3086 -2.2063 -1.2148 33 1 9.8131 -4.3205 -3.5999 34 1 12.2931 -2.9843 -2.5029 35 1 7.1666 -1.6044 -4.3750 36 1 6.5693 -3.2040 -3.8352 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:25 Heat of formation + Delta-G solvation = -56.708465 kcal Electronic energy + Delta-G solvation = -16746.544608 eV Core-core repulsion = 14036.175765 eV Total energy + Delta-G solvation = -2710.368843 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.05916 -38.05940 -36.99841 -35.28934 -34.11724 -32.01708 -29.80927 -29.11787 -26.48850 -24.47825 -22.40338 -21.50192 -21.08377 -18.99316 -18.25673 -17.01443 -16.78122 -16.63234 -16.02265 -15.68748 -15.21377 -14.85835 -14.52343 -14.21440 -13.95704 -13.83745 -13.51530 -13.31338 -13.06857 -12.82920 -12.61974 -12.43771 -12.30685 -12.19137 -12.05491 -11.88865 -11.73082 -11.62592 -11.26118 -10.86421 -10.55803 -10.07726 -9.25172 -8.15002 -6.27637 1.44291 1.46221 1.55723 1.83761 1.89203 2.44501 2.98778 3.13518 3.32288 3.98330 4.06994 4.17378 4.29009 4.37603 4.46768 4.52534 4.61658 4.64811 4.80142 4.86421 4.88181 4.98880 5.02089 5.11991 5.22355 5.32270 5.42253 5.49251 5.59819 5.72017 5.83798 6.06316 6.24379 6.38700 6.68205 6.77504 7.40428 7.48297 8.90694 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042157 B = 0.004461 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.018295 B = 6275.494032 C = 6550.460191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.238 3.762 3 C -0.020 4.020 4 C -0.108 4.108 5 C -0.102 4.102 6 C 0.038 3.962 7 N -0.508 5.508 8 C 0.043 3.957 9 C -0.116 4.116 10 C 0.228 3.772 11 O -0.605 6.605 12 C -0.541 4.541 13 H 0.052 0.948 14 C 0.025 3.975 15 N -0.916 5.916 16 Si 0.958 3.042 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.060 3.940 21 H 0.135 0.865 22 H 0.135 0.865 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.376 0.624 34 H 0.267 0.733 35 H 0.067 0.933 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 3.934 5.783 12.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.078 4.078 3 C -0.060 4.060 4 C -0.147 4.147 5 C -0.140 4.140 6 C -0.090 4.090 7 N -0.232 5.232 8 C -0.084 4.084 9 C -0.155 4.155 10 C 0.188 3.812 11 O -0.413 6.413 12 C -0.579 4.579 13 H 0.070 0.930 14 C -0.175 4.175 15 N -0.556 5.556 16 Si 0.784 3.216 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.199 1.199 20 C -0.068 4.068 21 H 0.152 0.848 22 H 0.153 0.847 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.225 0.775 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.056 4.488 5.652 14.051 hybrid contribution 1.619 -0.550 -0.285 1.734 sum -10.437 3.938 5.367 12.379 Atomic orbital electron populations 1.81257 1.15440 1.11410 1.11176 1.29998 0.95973 0.90901 0.90967 1.19584 0.78464 1.05282 1.02682 1.21418 0.94971 1.00303 0.98015 1.21415 0.93903 1.00992 0.97677 1.22428 0.86762 0.99137 1.00687 1.65304 1.08506 1.47524 1.01912 1.23113 0.94638 0.94968 0.95717 1.22646 0.95532 0.98790 0.98486 1.19588 0.91126 0.81766 0.88677 1.86079 1.39284 1.41108 1.74846 1.21876 0.93007 1.05480 1.37555 0.93016 1.25673 0.99808 0.97747 0.94256 1.69781 1.15855 1.28601 1.41404 0.85564 0.78053 0.79362 0.78631 1.20017 1.20896 1.19885 1.22798 0.94508 0.96207 0.93300 0.84769 0.84741 0.91123 0.91332 0.90813 0.90308 0.90947 0.94883 0.94063 0.89137 0.94367 0.93369 0.77457 0.92396 0.91410 0.95153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.62 18.54 20.00 0.37 -12.25 16 2 C 0.24 3.91 15.43 89.44 1.38 5.29 16 3 C -0.02 -0.16 5.70 28.79 0.16 0.01 16 4 C -0.11 -1.24 5.17 30.59 0.16 -1.08 16 5 C -0.10 -1.68 5.33 30.60 0.16 -1.52 16 6 C 0.04 0.95 4.83 86.30 0.42 1.36 16 7 N -0.51 -17.69 5.34 -881.04 -4.70 -22.39 16 8 C 0.04 1.51 5.93 86.42 0.51 2.02 16 9 C -0.12 -5.26 5.55 31.49 0.17 -5.08 16 10 C 0.23 11.30 1.05 -10.65 -0.01 11.29 16 11 O -0.60 -31.90 12.94 -148.98 -1.93 -33.83 16 12 C -0.54 -29.20 8.10 25.60 0.21 -28.99 16 13 H 0.05 2.82 7.53 -2.91 -0.02 2.80 16 14 C 0.02 1.30 5.02 84.66 0.43 1.73 16 15 N -0.92 -49.10 10.81 21.45 0.23 -48.87 16 16 Si 0.96 42.38 29.54 68.60 2.03 44.40 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 C 0.06 2.53 5.74 86.45 0.50 3.03 16 21 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 22 H 0.13 0.52 8.14 -2.38 -0.02 0.50 16 23 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 1.14 7.47 -2.39 -0.02 1.13 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 28 H 0.03 0.81 7.77 -2.39 -0.02 0.80 16 29 H 0.04 1.33 7.75 -2.38 -0.02 1.31 16 30 H 0.09 2.73 7.86 -2.39 -0.02 2.71 16 31 H 0.04 1.77 7.98 -2.39 -0.02 1.75 16 32 H 0.05 2.41 7.23 -2.39 -0.02 2.39 16 33 H 0.38 20.22 7.32 -74.06 -0.54 19.68 16 34 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 35 H 0.07 2.92 7.67 -2.39 -0.02 2.90 16 36 H 0.03 1.25 7.94 -2.39 -0.02 1.23 16 Total: -1.00 -64.31 299.97 0.61 -63.71 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.52 Total: 21.17 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 4.09 Total: -11.95 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -4.10 Total: -83.51 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -1.93 Total: -33.83 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -64.31 0.61 -63.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.997 kcal (2) G-P(sol) polarization free energy of solvation -64.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds