Wall clock time and date at job start Sun Mar 29 2020 22:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46918 * 85.35783 * 3 2 1 5 5 C 1.53001 * 109.46741 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46741 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.47133 * 179.97438 * 6 5 4 8 8 C 1.48539 * 110.99941 * 307.39783 * 7 6 5 9 9 C 1.54937 * 103.22274 * 200.27849 * 8 7 6 10 10 C 1.54597 * 102.92462 * 37.41216 * 9 8 7 11 11 O 1.42896 * 110.39284 * 97.00049 * 10 9 8 12 12 C 1.50700 * 110.30708 * 219.12443 * 10 9 8 13 13 H 1.07999 * 119.99988 * 115.71457 * 12 10 9 14 14 C 1.37885 * 120.00047 * 295.71637 * 12 10 9 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 10 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 C 1.47901 * 111.00273 * 189.99988 * 7 6 5 21 21 H 1.08999 * 109.47079 * 325.35262 * 3 2 1 22 22 H 1.09001 * 109.47020 * 205.35586 * 3 2 1 23 23 H 1.08991 * 109.47206 * 59.99413 * 4 3 2 24 24 H 1.09000 * 109.46692 * 299.99425 * 4 3 2 25 25 H 1.08997 * 109.47323 * 60.00296 * 5 4 3 26 26 H 1.09001 * 109.47107 * 299.99748 * 5 4 3 27 27 H 1.08999 * 109.47671 * 59.99841 * 6 5 4 28 28 H 1.09001 * 109.47115 * 299.99743 * 6 5 4 29 29 H 1.09000 * 110.66156 * 318.70740 * 8 7 6 30 30 H 1.08998 * 110.66681 * 81.67246 * 8 7 6 31 31 H 1.09004 * 110.72480 * 279.04903 * 9 8 7 32 32 H 1.09005 * 110.71803 * 155.77119 * 9 8 7 33 33 H 0.96703 * 114.00355 * 62.84440 * 11 10 9 34 34 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.91359 * 26.48539 * 20 7 6 36 36 H 1.09004 * 109.91438 * 265.19447 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.1159 -1.4378 5 6 4.6480 -0.1158 -1.4377 6 6 5.1580 -0.2317 -2.8755 7 7 6.6270 -0.2310 -2.8756 8 6 7.1588 0.9351 -2.1248 9 6 8.6066 1.0707 -2.6597 10 6 8.4558 0.7208 -4.1580 11 8 8.3451 1.9123 -4.9389 12 6 9.6296 -0.1017 -4.6237 13 1 9.4787 -1.1177 -4.9573 14 6 10.8963 0.4430 -4.6238 15 7 11.0793 1.6821 -4.2227 16 14 12.3511 -0.5762 -5.2018 17 1 11.8811 -1.9262 -5.6042 18 1 12.9932 0.0914 -6.3625 19 1 13.3357 -0.7043 -4.0974 20 6 7.1570 -0.1013 -4.2503 21 1 2.9717 -0.8446 0.5842 22 1 2.9709 0.9295 0.4401 23 1 2.7542 0.7293 -2.0219 24 1 2.7551 -1.0447 -1.8778 25 1 5.0114 -0.9614 -0.8537 26 1 5.0113 0.8128 -0.9974 27 1 4.7947 0.6141 -3.4593 28 1 4.7947 -1.1601 -3.3162 29 1 6.5808 1.8320 -2.3475 30 1 7.1589 0.7352 -1.0533 31 1 9.2693 0.3621 -2.1629 32 1 8.9692 2.0912 -2.5365 33 1 9.1264 2.4809 -4.9018 34 1 11.9705 2.0651 -4.2225 35 1 6.4335 0.4168 -4.8797 36 1 7.3706 -1.0883 -4.6605 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:27 Heat of formation + Delta-G solvation = -36.206905 kcal Electronic energy + Delta-G solvation = -16762.727551 eV Core-core repulsion = 14053.247722 eV Total energy + Delta-G solvation = -2709.479829 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.59020 -37.24172 -35.62739 -34.05810 -32.05986 -30.72770 -28.42359 -27.68687 -24.76494 -23.23206 -21.63693 -19.91742 -19.29960 -17.58997 -17.08000 -16.04777 -15.37220 -14.94495 -14.64649 -14.20240 -14.00049 -13.78397 -13.37654 -13.05732 -12.60776 -12.34523 -12.13594 -11.97317 -11.60537 -11.39691 -11.30639 -11.20772 -10.92043 -10.71985 -10.58869 -10.48037 -10.40790 -10.25908 -9.90729 -9.15267 -8.57373 -8.08925 -7.76917 -6.18918 -4.24475 2.54462 2.58063 3.23540 3.32165 3.36964 3.75236 4.33211 4.53203 4.73492 4.78549 5.08963 5.11951 5.26092 5.41437 5.48412 5.68047 5.74424 5.77604 5.90309 6.01298 6.10850 6.21796 6.27865 6.34633 6.46755 6.51476 6.94117 7.06849 7.30068 7.35116 7.52995 7.66962 7.73992 7.86669 8.18380 8.77350 9.42474 9.54288 10.88914 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.063015 B = 0.004172 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.229345 B = 6710.144357 C = 6765.455892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.209 3.791 3 C -0.027 4.027 4 C -0.115 4.115 5 C -0.118 4.118 6 C 0.045 3.955 7 N -0.515 5.515 8 C 0.032 3.968 9 C -0.120 4.120 10 C 0.242 3.758 11 O -0.595 6.595 12 C -0.526 4.526 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.900 5.900 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.054 3.946 21 H 0.110 0.890 22 H 0.109 0.891 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.383 0.617 34 H 0.266 0.734 35 H 0.035 0.965 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.941 -1.754 6.843 11.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.108 4.108 3 C -0.067 4.067 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.083 4.083 7 N -0.240 5.240 8 C -0.096 4.096 9 C -0.159 4.159 10 C 0.202 3.798 11 O -0.405 6.405 12 C -0.565 4.565 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.728 3.272 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.074 4.074 21 H 0.128 0.872 22 H 0.127 0.873 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.235 0.765 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.941 -2.373 6.962 13.184 hybrid contribution 1.575 0.514 -0.511 1.734 sum -9.366 -1.859 6.451 11.524 Atomic orbital electron populations 1.81224 1.13280 1.09213 1.08744 1.29388 0.95490 0.92912 0.93019 1.19389 0.81099 1.05869 1.00374 1.21535 0.96685 1.03323 0.93899 1.21637 0.92953 1.03195 0.97789 1.22272 0.89643 1.00572 0.95844 1.64846 1.05700 1.40691 1.12724 1.23288 0.97717 0.91000 0.97597 1.22991 0.92625 1.01248 0.98995 1.19366 0.90719 0.82853 0.86861 1.86084 1.45573 1.36116 1.72769 1.21753 0.91814 0.99525 1.43384 0.91945 1.25019 0.99036 0.95164 0.94223 1.69627 1.23003 1.13575 1.47892 0.86407 0.82024 0.80406 0.78365 1.19662 1.20962 1.20932 1.22872 0.96506 1.00029 0.87975 0.87187 0.87282 0.91182 0.90994 0.90618 0.91307 0.95159 0.91227 0.94940 0.91625 0.91425 0.91819 0.76536 0.92442 0.94645 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.69 18.54 42.15 0.78 -4.91 16 2 C 0.21 1.96 15.43 -20.76 -0.32 1.64 16 3 C -0.03 -0.16 5.70 -29.52 -0.17 -0.33 16 4 C -0.11 -0.87 5.17 -26.73 -0.14 -1.01 16 5 C -0.12 -1.18 4.87 -26.73 -0.13 -1.31 16 6 C 0.05 0.63 5.03 -3.82 -0.02 0.61 16 7 N -0.52 -9.36 5.40 -230.45 -1.24 -10.61 16 8 C 0.03 0.57 5.11 -1.89 -0.01 0.57 16 9 C -0.12 -2.70 5.50 -24.87 -0.14 -2.84 16 10 C 0.24 5.94 0.99 -90.42 -0.09 5.85 16 11 O -0.60 -15.44 12.92 -35.23 -0.46 -15.90 16 12 C -0.53 -14.04 8.10 -34.44 -0.28 -14.32 16 13 H 0.06 1.67 7.34 -52.49 -0.39 1.28 16 14 C 0.07 1.76 5.27 -17.82 -0.09 1.67 16 15 N -0.90 -23.84 10.89 55.43 0.60 -23.24 16 16 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 C 0.05 1.15 6.17 -2.76 -0.02 1.13 16 21 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.69 6.79 -51.93 -0.35 0.34 16 27 H 0.03 0.44 7.81 -51.93 -0.41 0.04 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 30 H 0.07 1.04 7.65 -51.93 -0.40 0.65 16 31 H 0.07 1.62 7.86 -51.93 -0.41 1.21 16 32 H 0.06 1.49 8.06 -51.93 -0.42 1.07 16 33 H 0.38 10.10 7.07 45.56 0.32 10.42 16 34 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.04 0.75 7.39 -51.93 -0.38 0.37 16 36 H 0.08 1.69 7.39 -51.93 -0.38 1.30 16 LS Contribution 298.46 15.07 4.50 4.50 Total: -1.00 -29.34 298.46 -7.14 -36.48 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.90 Total: 6.45 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.40 Total: -8.34 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.14 Total: -38.76 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.46 Total: -15.90 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.34 -7.14 -36.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.270 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds