Wall clock time and date at job start Sun Mar 29 2020 22:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46918 * 85.35783 * 3 2 1 5 5 C 1.53001 * 109.46741 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46741 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.47133 * 179.97438 * 6 5 4 8 8 C 1.48539 * 110.99941 * 307.39783 * 7 6 5 9 9 C 1.54937 * 103.22274 * 200.27849 * 8 7 6 10 10 C 1.54597 * 102.92462 * 37.41216 * 9 8 7 11 11 O 1.42896 * 110.39284 * 97.00049 * 10 9 8 12 12 C 1.50700 * 110.30708 * 219.12443 * 10 9 8 13 13 H 1.07999 * 119.99988 * 115.71457 * 12 10 9 14 14 C 1.37885 * 120.00047 * 295.71637 * 12 10 9 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 10 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 C 1.47901 * 111.00273 * 189.99988 * 7 6 5 21 21 H 1.08999 * 109.47079 * 325.35262 * 3 2 1 22 22 H 1.09001 * 109.47020 * 205.35586 * 3 2 1 23 23 H 1.08991 * 109.47206 * 59.99413 * 4 3 2 24 24 H 1.09000 * 109.46692 * 299.99425 * 4 3 2 25 25 H 1.08997 * 109.47323 * 60.00296 * 5 4 3 26 26 H 1.09001 * 109.47107 * 299.99748 * 5 4 3 27 27 H 1.08999 * 109.47671 * 59.99841 * 6 5 4 28 28 H 1.09001 * 109.47115 * 299.99743 * 6 5 4 29 29 H 1.09000 * 110.66156 * 318.70740 * 8 7 6 30 30 H 1.08998 * 110.66681 * 81.67246 * 8 7 6 31 31 H 1.09004 * 110.72480 * 279.04903 * 9 8 7 32 32 H 1.09005 * 110.71803 * 155.77119 * 9 8 7 33 33 H 0.96703 * 114.00355 * 62.84440 * 11 10 9 34 34 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.91359 * 26.48539 * 20 7 6 36 36 H 1.09004 * 109.91438 * 265.19447 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.1159 -1.4378 5 6 4.6480 -0.1158 -1.4377 6 6 5.1580 -0.2317 -2.8755 7 7 6.6270 -0.2310 -2.8756 8 6 7.1588 0.9351 -2.1248 9 6 8.6066 1.0707 -2.6597 10 6 8.4558 0.7208 -4.1580 11 8 8.3451 1.9123 -4.9389 12 6 9.6296 -0.1017 -4.6237 13 1 9.4787 -1.1177 -4.9573 14 6 10.8963 0.4430 -4.6238 15 7 11.0793 1.6821 -4.2227 16 14 12.3511 -0.5762 -5.2018 17 1 11.8811 -1.9262 -5.6042 18 1 12.9932 0.0914 -6.3625 19 1 13.3357 -0.7043 -4.0974 20 6 7.1570 -0.1013 -4.2503 21 1 2.9717 -0.8446 0.5842 22 1 2.9709 0.9295 0.4401 23 1 2.7542 0.7293 -2.0219 24 1 2.7551 -1.0447 -1.8778 25 1 5.0114 -0.9614 -0.8537 26 1 5.0113 0.8128 -0.9974 27 1 4.7947 0.6141 -3.4593 28 1 4.7947 -1.1601 -3.3162 29 1 6.5808 1.8320 -2.3475 30 1 7.1589 0.7352 -1.0533 31 1 9.2693 0.3621 -2.1629 32 1 8.9692 2.0912 -2.5365 33 1 9.1264 2.4809 -4.9018 34 1 11.9705 2.0651 -4.2225 35 1 6.4335 0.4168 -4.8797 36 1 7.3706 -1.0883 -4.6605 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:27 Heat of formation + Delta-G solvation = -57.179025 kcal Electronic energy + Delta-G solvation = -16763.636970 eV Core-core repulsion = 14053.247722 eV Total energy + Delta-G solvation = -2710.389248 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14453 -38.06771 -37.02332 -35.23042 -34.09881 -32.01580 -29.94207 -29.15772 -26.43184 -24.49672 -22.68211 -21.27428 -21.01643 -19.07778 -18.26336 -16.97278 -16.83788 -16.67907 -16.03552 -15.78070 -15.24505 -14.86659 -14.49359 -14.16453 -13.99579 -13.82806 -13.45956 -13.31707 -13.11863 -12.83222 -12.62438 -12.34620 -12.33681 -12.18492 -12.09609 -11.91974 -11.77169 -11.61341 -11.30021 -11.01720 -10.57269 -10.04699 -9.22723 -8.18860 -6.31861 1.41398 1.44799 1.55523 1.83444 1.88996 2.41821 3.00471 3.10873 3.31915 3.92879 4.06350 4.16942 4.31979 4.38087 4.48006 4.50639 4.63418 4.63805 4.77217 4.85185 4.87669 4.98296 5.03261 5.15891 5.20817 5.32314 5.44712 5.49305 5.55086 5.66894 5.81807 6.07045 6.20382 6.36666 6.67952 6.72744 7.38116 7.48642 8.87280 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.063015 B = 0.004172 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.229345 B = 6710.144357 C = 6765.455892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.237 3.763 3 C -0.020 4.020 4 C -0.108 4.108 5 C -0.108 4.108 6 C 0.040 3.960 7 N -0.518 5.518 8 C 0.045 3.955 9 C -0.115 4.115 10 C 0.223 3.777 11 O -0.604 6.604 12 C -0.553 4.553 13 H 0.052 0.948 14 C 0.026 3.974 15 N -0.915 5.915 16 Si 0.960 3.040 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.277 1.277 20 C 0.060 3.940 21 H 0.138 0.862 22 H 0.134 0.866 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.023 0.977 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.377 0.623 34 H 0.268 0.732 35 H 0.031 0.969 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.094 -2.301 8.088 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.079 4.079 3 C -0.060 4.060 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.088 4.088 7 N -0.242 5.242 8 C -0.083 4.083 9 C -0.154 4.154 10 C 0.183 3.817 11 O -0.413 6.413 12 C -0.591 4.591 13 H 0.071 0.929 14 C -0.174 4.174 15 N -0.556 5.556 16 Si 0.785 3.215 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.203 1.203 20 C -0.068 4.068 21 H 0.156 0.844 22 H 0.151 0.849 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.228 0.772 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.110 -2.922 8.214 14.122 hybrid contribution 1.658 0.689 -0.934 2.024 sum -9.452 -2.233 7.280 12.138 Atomic orbital electron populations 1.81256 1.15465 1.11672 1.10891 1.30006 0.95992 0.90835 0.91050 1.19592 0.78457 1.08339 0.99577 1.21415 0.94951 1.03282 0.95114 1.21551 0.94277 1.03900 0.94853 1.22448 0.86752 1.00715 0.98855 1.64836 1.08519 1.40501 1.10356 1.23212 0.94536 0.91395 0.99125 1.22782 0.95269 0.99480 0.97827 1.19673 0.91771 0.82445 0.87784 1.86077 1.45200 1.36607 1.73453 1.22011 0.93247 0.99544 1.44281 0.92945 1.25694 1.01195 0.96226 0.94245 1.69703 1.23568 1.14381 1.47908 0.85486 0.79070 0.78931 0.77966 1.19649 1.20667 1.20296 1.22691 0.95199 0.98773 0.90124 0.84440 0.84856 0.91708 0.90899 0.89590 0.90788 0.95825 0.90514 0.94419 0.88396 0.93384 0.93467 0.77246 0.92214 0.95067 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.65 18.54 20.01 0.37 -12.28 16 2 C 0.24 3.90 15.43 89.44 1.38 5.28 16 3 C -0.02 -0.15 5.70 28.79 0.16 0.01 16 4 C -0.11 -1.26 5.17 30.59 0.16 -1.10 16 5 C -0.11 -1.75 4.87 30.59 0.15 -1.60 16 6 C 0.04 1.03 5.03 86.30 0.43 1.46 16 7 N -0.52 -17.92 5.40 -883.02 -4.76 -22.69 16 8 C 0.04 1.54 5.11 86.65 0.44 1.98 16 9 C -0.11 -5.16 5.50 31.80 0.17 -4.99 16 10 C 0.22 11.05 0.99 -10.66 -0.01 11.04 16 11 O -0.60 -31.86 12.92 -148.98 -1.93 -33.78 16 12 C -0.55 -29.90 8.10 25.60 0.21 -29.69 16 13 H 0.05 2.86 7.34 -2.91 -0.02 2.83 16 14 C 0.03 1.38 5.27 84.66 0.45 1.83 16 15 N -0.92 -48.82 10.89 21.45 0.23 -48.59 16 16 Si 0.96 42.27 29.54 68.60 2.03 44.29 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 C 0.06 2.57 6.17 86.44 0.53 3.11 16 21 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 22 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.16 6.79 -2.39 -0.02 1.14 16 27 H 0.02 0.64 7.81 -2.39 -0.02 0.62 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.04 1.27 8.00 -2.39 -0.02 1.25 16 30 H 0.10 2.76 7.65 -2.39 -0.02 2.74 16 31 H 0.05 2.30 7.86 -2.38 -0.02 2.28 16 32 H 0.05 2.23 8.06 -2.38 -0.02 2.21 16 33 H 0.38 20.36 7.07 -74.06 -0.52 19.84 16 34 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 35 H 0.03 1.33 7.39 -2.39 -0.02 1.31 16 36 H 0.07 3.02 7.39 -2.38 -0.02 3.00 16 Total: -1.00 -64.41 298.46 0.56 -63.85 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.54 Total: 21.86 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 4.08 Total: -12.67 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -4.16 Total: -83.55 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -1.93 Total: -33.78 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -64.41 0.56 -63.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.669 kcal (2) G-P(sol) polarization free energy of solvation -64.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds