Wall clock time and date at job start Sun Mar 29 2020 22:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99938 * 2 1 4 4 N 1.46907 * 109.46789 * 123.25018 * 3 2 1 5 5 C 1.46900 * 110.99729 * 199.84567 * 4 3 2 6 6 C 1.50697 * 109.47276 * 66.04333 * 5 4 3 7 7 H 1.08000 * 120.00051 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00121 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99715 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00013 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47203 * 59.99658 * 10 8 6 12 12 H 1.48494 * 109.46959 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46710 * 299.99896 * 10 8 6 14 14 C 1.46899 * 110.99731 * 75.89140 * 4 3 2 15 15 C 1.52998 * 109.46917 * 195.40834 * 14 4 3 16 16 H 1.09004 * 110.21762 * 296.92752 * 15 14 4 17 17 C 1.54479 * 110.24694 * 174.99800 * 15 14 4 18 18 C 1.54632 * 101.76431 * 215.58718 * 17 15 14 19 19 C 1.51274 * 104.19595 * 24.79787 * 18 17 15 20 20 O 1.21280 * 124.94237 * 163.77544 * 19 18 17 21 21 N 1.34560 * 110.14055 * 343.67334 * 19 18 17 22 22 H 1.08000 * 120.00028 * 359.97438 * 1 2 3 23 23 H 1.07995 * 119.99845 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99812 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47051 * 3.25231 * 3 2 1 26 26 H 1.08998 * 109.46521 * 243.24666 * 3 2 1 27 27 H 1.08997 * 109.46801 * 186.05039 * 5 4 3 28 28 H 1.09008 * 109.46627 * 306.04606 * 5 4 3 29 29 H 0.96993 * 119.99573 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.47269 * 315.41115 * 14 4 3 31 31 H 1.09000 * 109.47394 * 75.41085 * 14 4 3 32 32 H 1.09004 * 110.97058 * 333.70448 * 17 15 14 33 33 H 1.09004 * 110.97088 * 97.46669 * 17 15 14 34 34 H 1.08996 * 110.48351 * 143.47738 * 18 17 15 35 35 H 1.08999 * 110.48493 * 266.11657 * 18 17 15 36 36 H 0.97001 * 124.43403 * 179.64148 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9660 1.3495 1.1583 5 6 3.3561 2.7312 1.4691 6 6 2.1462 3.5038 1.9275 7 1 1.1837 3.0170 1.9828 8 6 2.2681 4.8319 2.2772 9 7 3.4403 5.4246 2.2102 10 14 0.7684 5.7894 2.8460 11 1 0.2037 5.1489 4.0609 12 1 1.1628 7.1862 3.1600 13 1 -0.2536 5.7944 1.7686 14 6 4.1480 0.5057 0.9373 15 6 4.8598 0.2659 2.2701 16 1 5.2228 1.2091 2.6784 17 6 6.0330 -0.7209 2.0797 18 6 5.9975 -1.5130 3.4072 19 6 4.5655 -1.3843 3.8778 20 8 4.0474 -2.0809 4.7246 21 7 3.9506 -0.3831 3.2220 22 1 -0.5400 0.9353 0.0004 23 1 -0.5399 -0.9353 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 1.3566 2.1328 0.0583 26 1 2.6457 1.3884 -0.9177 27 1 4.1062 2.7277 2.2599 28 1 3.7707 3.2010 0.5771 29 1 3.5261 6.3588 2.4566 30 1 3.8383 -0.4497 0.5136 31 1 4.8276 1.0058 0.2473 32 1 5.8557 -1.3782 1.2284 33 1 6.9772 -0.1876 1.9688 34 1 6.2496 -2.5592 3.2340 35 1 6.6790 -1.0706 4.1338 36 1 3.0259 -0.1240 3.3592 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593028771.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:26 Heat of formation + Delta-G solvation = -17.918413 kcal Electronic energy + Delta-G solvation = -17237.897003 eV Core-core repulsion = 14529.210223 eV Total energy + Delta-G solvation = -2708.686780 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.01198 -37.43449 -35.80190 -33.22938 -32.31658 -30.98176 -29.09454 -27.11300 -24.95162 -23.38545 -21.42149 -20.48906 -19.99795 -19.08065 -16.94708 -16.61203 -16.06114 -15.21242 -14.84160 -14.45072 -14.28809 -13.85991 -13.46957 -13.12547 -13.07263 -12.48033 -12.30885 -12.21437 -11.89571 -11.50998 -11.35662 -10.95437 -10.84582 -10.80901 -10.54706 -10.28029 -9.94625 -9.56298 -9.31700 -8.97819 -8.65364 -8.49939 -7.39797 -6.10506 -4.11916 2.68616 2.90707 3.29291 3.33934 3.37007 3.80753 4.35257 4.49182 4.63970 4.79387 5.07233 5.24666 5.27588 5.44404 5.52154 5.54196 5.65802 5.72587 5.81959 5.89756 5.96910 6.10374 6.23466 6.32860 6.48721 6.99695 7.11251 7.19514 7.23489 7.25544 7.51076 7.71512 7.95503 8.07429 8.42552 8.64343 8.95483 9.52967 11.00122 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019606 B = 0.007371 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.761223 B = 3797.837330 C = 4371.603880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C 0.084 3.916 4 N -0.534 5.534 5 C 0.191 3.809 6 C -0.511 4.511 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.897 5.897 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.045 3.955 15 C 0.135 3.865 16 H 0.087 0.913 17 C -0.129 4.129 18 C -0.155 4.155 19 C 0.512 3.488 20 O -0.554 6.554 21 N -0.701 5.701 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.034 0.966 28 H -0.008 1.008 29 H 0.262 0.738 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -9.974 -4.221 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.152 4.152 3 C -0.043 4.043 4 N -0.258 5.258 5 C 0.066 3.934 6 C -0.549 4.549 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.084 4.084 15 C 0.029 3.971 16 H 0.105 0.895 17 C -0.168 4.168 18 C -0.196 4.196 19 C 0.298 3.702 20 O -0.433 6.433 21 N -0.356 5.356 22 H 0.114 0.886 23 H 0.107 0.893 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.010 0.990 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 3.677 -10.336 -3.368 11.476 hybrid contribution -0.650 1.162 -0.362 1.380 sum 3.027 -9.174 -3.730 10.356 Atomic orbital electron populations 1.23719 0.96012 1.01246 1.02667 1.22962 0.95875 0.98357 0.97980 1.21172 0.96248 0.95596 0.91322 1.62098 1.13793 1.13761 1.36136 1.19803 0.96853 0.81262 0.95452 1.21101 0.95011 0.94607 1.44207 0.91874 1.24968 0.96038 0.97704 0.95706 1.69934 1.23011 1.12077 1.48633 0.86581 0.82864 0.78796 0.79317 1.20141 1.21351 1.20283 1.22410 0.93169 0.98105 0.94741 1.21742 0.89022 0.96144 0.90197 0.89483 1.22684 0.98947 0.97931 0.97198 1.22318 0.95859 1.02841 0.98550 1.20890 0.88900 0.79712 0.80734 1.90712 1.71851 1.47416 1.33314 1.46265 1.15631 1.33493 1.40207 0.88564 0.89306 0.88542 0.88914 0.95262 0.94840 0.99049 0.92818 0.91482 0.94181 0.90159 0.89336 0.88592 0.88120 0.73848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.90 14.32 29.02 0.42 -2.48 16 2 C -0.13 -2.06 9.33 -36.02 -0.34 -2.40 16 3 C 0.08 1.51 5.26 -4.97 -0.03 1.48 16 4 N -0.53 -10.17 4.02 -237.51 -0.95 -11.13 16 5 C 0.19 4.53 4.57 -4.98 -0.02 4.51 16 6 C -0.51 -13.54 8.23 -34.44 -0.28 -13.82 16 7 H 0.06 1.67 7.31 -52.49 -0.38 1.29 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 10 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 14 C 0.05 0.69 4.42 -3.83 -0.02 0.68 16 15 C 0.13 1.94 3.44 -67.01 -0.23 1.71 16 16 H 0.09 1.41 6.74 -51.93 -0.35 1.06 16 17 C -0.13 -1.35 6.69 -25.10 -0.17 -1.52 16 18 C -0.16 -1.77 6.86 -26.74 -0.18 -1.96 16 19 C 0.51 8.26 8.43 -10.80 -0.09 8.17 16 20 O -0.55 -11.11 18.03 5.56 0.10 -11.01 16 21 N -0.70 -11.26 5.80 -52.73 -0.31 -11.57 16 22 H 0.10 1.44 7.84 -52.49 -0.41 1.03 16 23 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 24 H 0.10 1.38 7.29 -52.48 -0.38 0.99 16 25 H 0.09 1.88 6.22 -51.93 -0.32 1.55 16 26 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 27 H 0.03 0.84 6.45 -51.93 -0.33 0.51 16 28 H -0.01 -0.21 8.12 -51.92 -0.42 -0.63 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.07 0.94 6.83 -51.93 -0.35 0.58 16 31 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 32 H 0.08 0.75 7.88 -51.93 -0.41 0.34 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.42 7.46 8.71 -40.82 -0.36 7.10 16 LS Contribution 299.23 15.07 4.51 4.51 Total: -1.00 -30.13 299.23 -7.36 -37.49 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.39 Total: 4.60 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.04 Total: -4.16 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.52 Total: -47.56 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.10 Total: -11.01 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.13 -7.36 -37.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593028771.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.572 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds