Wall clock time and date at job start Sun Mar 29 2020 22:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99938 * 2 1 4 4 N 1.46907 * 109.46789 * 123.25018 * 3 2 1 5 5 C 1.46900 * 110.99729 * 199.84567 * 4 3 2 6 6 C 1.50697 * 109.47276 * 66.04333 * 5 4 3 7 7 H 1.08000 * 120.00051 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00121 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99715 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00013 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47203 * 59.99658 * 10 8 6 12 12 H 1.48494 * 109.46959 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46710 * 299.99896 * 10 8 6 14 14 C 1.46899 * 110.99731 * 75.89140 * 4 3 2 15 15 C 1.52998 * 109.46917 * 195.40834 * 14 4 3 16 16 H 1.09004 * 110.21762 * 296.92752 * 15 14 4 17 17 C 1.54479 * 110.24694 * 174.99800 * 15 14 4 18 18 C 1.54632 * 101.76431 * 215.58718 * 17 15 14 19 19 C 1.51274 * 104.19595 * 24.79787 * 18 17 15 20 20 O 1.21280 * 124.94237 * 163.77544 * 19 18 17 21 21 N 1.34560 * 110.14055 * 343.67334 * 19 18 17 22 22 H 1.08000 * 120.00028 * 359.97438 * 1 2 3 23 23 H 1.07995 * 119.99845 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99812 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47051 * 3.25231 * 3 2 1 26 26 H 1.08998 * 109.46521 * 243.24666 * 3 2 1 27 27 H 1.08997 * 109.46801 * 186.05039 * 5 4 3 28 28 H 1.09008 * 109.46627 * 306.04606 * 5 4 3 29 29 H 0.96993 * 119.99573 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.47269 * 315.41115 * 14 4 3 31 31 H 1.09000 * 109.47394 * 75.41085 * 14 4 3 32 32 H 1.09004 * 110.97058 * 333.70448 * 17 15 14 33 33 H 1.09004 * 110.97088 * 97.46669 * 17 15 14 34 34 H 1.08996 * 110.48351 * 143.47738 * 18 17 15 35 35 H 1.08999 * 110.48493 * 266.11657 * 18 17 15 36 36 H 0.97001 * 124.43403 * 179.64148 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9660 1.3495 1.1583 5 6 3.3561 2.7312 1.4691 6 6 2.1462 3.5038 1.9275 7 1 1.1837 3.0170 1.9828 8 6 2.2681 4.8319 2.2772 9 7 3.4403 5.4246 2.2102 10 14 0.7684 5.7894 2.8460 11 1 0.2037 5.1489 4.0609 12 1 1.1628 7.1862 3.1600 13 1 -0.2536 5.7944 1.7686 14 6 4.1480 0.5057 0.9373 15 6 4.8598 0.2659 2.2701 16 1 5.2228 1.2091 2.6784 17 6 6.0330 -0.7209 2.0797 18 6 5.9975 -1.5130 3.4072 19 6 4.5655 -1.3843 3.8778 20 8 4.0474 -2.0809 4.7246 21 7 3.9506 -0.3831 3.2220 22 1 -0.5400 0.9353 0.0004 23 1 -0.5399 -0.9353 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 1.3566 2.1328 0.0583 26 1 2.6457 1.3884 -0.9177 27 1 4.1062 2.7277 2.2599 28 1 3.7707 3.2010 0.5771 29 1 3.5261 6.3588 2.4566 30 1 3.8383 -0.4497 0.5136 31 1 4.8276 1.0058 0.2473 32 1 5.8557 -1.3782 1.2284 33 1 6.9772 -0.1876 1.9688 34 1 6.2496 -2.5592 3.2340 35 1 6.6790 -1.0706 4.1338 36 1 3.0259 -0.1240 3.3592 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593028771.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:26 Heat of formation + Delta-G solvation = -39.384665 kcal Electronic energy + Delta-G solvation = -17238.827850 eV Core-core repulsion = 14529.210223 eV Total energy + Delta-G solvation = -2709.617627 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22460 -38.89822 -37.14315 -34.96539 -33.92534 -32.04169 -30.51829 -28.84346 -26.34097 -24.98447 -22.72344 -21.82259 -21.22289 -20.36930 -18.61562 -18.11558 -17.35874 -16.78319 -16.38527 -15.91344 -15.68069 -15.35148 -14.77956 -14.49389 -14.15116 -14.08465 -13.70822 -13.44797 -13.33419 -13.04713 -12.81196 -12.59944 -12.47351 -12.01847 -11.91505 -11.86849 -11.60157 -11.19786 -10.84795 -10.59624 -10.24212 -9.96308 -8.96922 -8.20297 -6.27894 1.39795 1.41498 1.46709 1.49256 1.66736 2.39281 2.57667 3.13120 3.27463 3.64820 3.70326 3.91139 4.13908 4.30233 4.35442 4.44977 4.45661 4.57450 4.74446 4.86909 4.92602 4.96582 5.04190 5.12533 5.24475 5.29868 5.31234 5.65967 5.77375 5.94635 6.01281 6.08357 6.25410 6.34354 6.65852 6.88105 7.34266 7.41207 8.89872 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019606 B = 0.007371 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.761223 B = 3797.837330 C = 4371.603880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C 0.086 3.914 4 N -0.538 5.538 5 C 0.209 3.791 6 C -0.521 4.521 7 H 0.058 0.942 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.958 3.042 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.046 3.954 15 C 0.132 3.868 16 H 0.064 0.936 17 C -0.113 4.113 18 C -0.144 4.144 19 C 0.502 3.498 20 O -0.601 6.601 21 N -0.707 5.707 22 H 0.087 0.913 23 H 0.115 0.885 24 H 0.116 0.884 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.016 0.984 28 H -0.036 1.036 29 H 0.263 0.737 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 -11.353 -4.885 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.160 4.160 3 C -0.042 4.042 4 N -0.262 5.262 5 C 0.083 3.917 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.783 3.217 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.194 1.194 14 C -0.082 4.082 15 C 0.027 3.973 16 H 0.082 0.918 17 C -0.151 4.151 18 C -0.183 4.183 19 C 0.290 3.710 20 O -0.483 6.483 21 N -0.359 5.359 22 H 0.105 0.895 23 H 0.133 0.867 24 H 0.134 0.866 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.034 0.966 28 H -0.018 1.018 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.010 -11.721 -4.062 13.037 hybrid contribution -0.787 1.583 -0.183 1.777 sum 3.223 -10.139 -4.246 11.454 Atomic orbital electron populations 1.23907 0.95850 1.02083 1.00959 1.22866 0.96107 0.97534 0.99467 1.21112 0.95741 0.96242 0.91082 1.62012 1.15611 1.11317 1.37273 1.19400 0.95199 0.83622 0.93465 1.21429 0.95694 0.95142 1.43672 0.92391 1.25758 0.98651 0.98801 0.95960 1.70042 1.24839 1.12349 1.49779 0.85613 0.79715 0.77433 0.78929 1.19921 1.20946 1.19415 1.22516 0.91936 0.98162 0.95625 1.21814 0.90064 0.96417 0.89046 0.91840 1.22716 0.98005 0.96999 0.97412 1.22352 0.92300 1.04638 0.99051 1.21734 0.90733 0.78711 0.79787 1.90679 1.73315 1.49016 1.35339 1.46450 1.15292 1.33549 1.40568 0.89497 0.86711 0.86605 0.91949 0.94660 0.96643 1.01815 0.92804 0.89201 0.93575 0.88032 0.86836 0.86254 0.86619 0.75405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.21 14.32 67.78 0.97 -4.24 16 2 C -0.14 -4.14 9.33 25.65 0.24 -3.90 16 3 C 0.09 3.06 5.26 85.56 0.45 3.51 16 4 N -0.54 -20.58 4.02 -905.35 -3.64 -24.22 16 5 C 0.21 10.21 4.57 85.56 0.39 10.61 16 6 C -0.52 -28.26 8.23 25.60 0.21 -28.05 16 7 H 0.06 3.14 7.31 -2.91 -0.02 3.12 16 8 C 0.01 0.37 5.46 84.65 0.46 0.83 16 9 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 10 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 14 C 0.05 1.35 4.42 86.30 0.38 1.74 16 15 C 0.13 3.63 3.44 45.44 0.16 3.79 16 16 H 0.06 2.06 6.74 -2.39 -0.02 2.04 16 17 C -0.11 -1.97 6.69 31.65 0.21 -1.76 16 18 C -0.14 -2.83 6.86 30.59 0.21 -2.62 16 19 C 0.50 15.69 8.43 87.87 0.74 16.43 16 20 O -0.60 -24.08 18.03 -3.03 -0.05 -24.13 16 21 N -0.71 -22.36 5.80 -439.26 -2.55 -24.91 16 22 H 0.09 2.53 7.84 -2.91 -0.02 2.51 16 23 H 0.11 2.56 8.06 -2.91 -0.02 2.54 16 24 H 0.12 2.96 7.29 -2.91 -0.02 2.94 16 25 H 0.06 2.59 6.22 -2.39 -0.01 2.57 16 26 H 0.04 1.20 8.00 -2.39 -0.02 1.18 16 27 H 0.02 0.81 6.45 -2.39 -0.02 0.79 16 28 H -0.04 -1.92 8.12 -2.38 -0.02 -1.94 16 29 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.09 2.25 6.83 -2.39 -0.02 2.23 16 31 H 0.05 1.32 8.06 -2.39 -0.02 1.30 16 32 H 0.10 1.41 7.88 -2.39 -0.02 1.39 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.41 14.64 8.71 -92.71 -0.81 13.83 16 Total: -1.00 -66.88 299.23 0.75 -66.13 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.26 Total: 18.78 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 4.42 Total: -3.67 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -5.90 Total: -102.93 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -66.88 0.75 -66.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593028771.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.748 kcal (2) G-P(sol) polarization free energy of solvation -66.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds