Wall clock time and date at job start Sun Mar 29 2020 22:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 110.91830 * 2 1 4 4 C 1.34774 * 119.99769 * 56.02842 * 3 2 1 5 5 O 1.21592 * 120.00301 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99902 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47300 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99822 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47196 * 59.99759 * 13 11 9 15 15 H 1.48494 * 109.47285 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46819 * 300.00256 * 13 11 9 17 17 C 1.54636 * 111.07139 * 123.98885 * 2 1 3 18 18 C 1.51094 * 104.72606 * 93.41172 * 17 2 1 19 19 C 1.30527 * 111.10401 * 16.44072 * 18 17 2 20 20 C 1.51096 * 111.10356 * 359.97438 * 19 18 17 21 21 H 1.09002 * 109.46846 * 60.69856 * 1 2 3 22 22 H 1.08998 * 109.47531 * 180.70173 * 1 2 3 23 23 H 1.09003 * 109.47325 * 300.70850 * 1 2 3 24 24 H 0.96999 * 120.00180 * 236.03825 * 3 2 1 25 25 H 0.96999 * 120.00047 * 359.97438 * 6 4 3 26 26 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 27 27 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 28 28 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 29 29 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 30 30 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 31 31 H 1.09000 * 110.38948 * 212.22890 * 17 2 1 32 32 H 1.09005 * 110.38333 * 334.60485 * 17 2 1 33 33 H 1.08005 * 124.45289 * 196.46043 * 18 17 2 34 34 H 1.07999 * 124.44832 * 180.02562 * 19 18 17 35 35 H 1.08997 * 110.38866 * 224.75159 * 20 19 18 36 36 H 1.08999 * 110.48482 * 102.42659 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6844 2.2308 0.9680 5 8 0.9180 1.8729 1.8415 6 7 2.1651 3.4899 0.9677 7 6 1.7648 4.4270 2.0203 8 6 2.4477 5.7764 1.7884 9 6 2.0355 6.7406 2.8707 10 1 1.3543 6.4229 3.6461 11 6 2.5281 8.0284 2.8710 12 7 3.3573 8.4155 1.9264 13 14 2.0177 9.2234 4.2130 14 1 2.4224 8.6842 5.5360 15 1 2.6803 10.5331 3.9878 16 1 0.5439 9.4030 4.1815 17 6 2.0859 -0.8067 1.1964 18 6 2.3051 -2.1990 0.6522 19 6 2.3047 -2.1989 -0.6531 20 6 2.0845 -0.8065 -1.1969 21 1 -0.3633 0.5030 -0.8962 22 1 -0.3634 -1.0275 0.0126 23 1 -0.3634 0.5248 0.8836 24 1 2.6645 1.6540 -0.6967 25 1 2.7768 3.7753 0.2711 26 1 0.6830 4.5583 1.9977 27 1 2.0627 4.0316 2.9914 28 1 3.5296 5.6448 1.8113 29 1 2.1503 6.1720 0.8172 30 1 3.7036 9.3215 1.9263 31 1 3.0289 -0.3793 1.5372 32 1 1.3610 -0.8269 2.0103 33 1 2.4437 -3.0790 1.2629 34 1 2.4428 -3.0787 -1.2641 35 1 1.3593 -0.8268 -2.0103 36 1 3.0261 -0.3775 -1.5395 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594235326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:18 Heat of formation + Delta-G solvation = -23.919288 kcal Electronic energy + Delta-G solvation = -16682.072272 eV Core-core repulsion = 13973.125274 eV Total energy + Delta-G solvation = -2708.946998 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28850 -38.33408 -34.81835 -33.68863 -32.78048 -30.34119 -28.86343 -28.39101 -25.82827 -24.57613 -21.42815 -20.65825 -19.62852 -19.03673 -17.66856 -16.57515 -16.27370 -15.34290 -15.00931 -14.53477 -14.42145 -13.71843 -13.62229 -13.28379 -12.82806 -12.33362 -12.29058 -12.19057 -11.93269 -11.60539 -11.31352 -11.17195 -11.02367 -10.89133 -10.63021 -10.27579 -9.73987 -9.48604 -9.22902 -9.10179 -8.91842 -8.46088 -8.21287 -6.07355 -4.10002 2.08810 3.06585 3.32811 3.36440 3.40291 3.63307 4.34130 4.41724 4.56069 4.74431 4.91609 5.09782 5.28193 5.29651 5.47938 5.58130 5.66610 5.80033 5.86619 5.95642 6.05988 6.30733 6.37627 6.42652 6.44912 6.71080 6.77797 6.82208 7.06272 7.30524 7.59469 7.65804 7.91918 8.28645 8.49833 8.95133 9.06935 9.54616 11.04311 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.064387 B = 0.003962 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.763524 B = 7065.185981 C = 7192.007078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.192 3.808 3 N -0.744 5.744 4 C 0.700 3.300 5 O -0.593 6.593 6 N -0.740 5.740 7 C 0.141 3.859 8 C 0.013 3.987 9 C -0.521 4.521 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.106 4.106 18 C -0.155 4.155 19 C -0.173 4.173 20 C -0.101 4.101 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.087 0.913 24 H 0.393 0.607 25 H 0.392 0.608 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 -18.390 -7.547 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.105 3.895 3 N -0.400 5.400 4 C 0.400 3.600 5 O -0.471 6.471 6 N -0.394 5.394 7 C 0.018 3.982 8 C -0.024 4.024 9 C -0.560 4.560 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.144 4.144 18 C -0.174 4.174 19 C -0.191 4.191 20 C -0.138 4.138 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.227 0.773 25 H 0.225 0.775 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.096 0.904 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.449 -18.509 -6.769 19.761 hybrid contribution 0.485 0.950 -0.023 1.067 sum -0.964 -17.559 -6.792 18.852 Atomic orbital electron populations 1.22136 0.93341 1.02016 1.03881 1.20787 0.94086 0.80180 0.94494 1.45225 1.52474 1.11762 1.30585 1.16057 0.81032 0.80907 0.82010 1.90835 1.39684 1.77607 1.39008 1.45562 1.50936 1.10650 1.32205 1.21569 0.99202 0.89258 0.88161 1.19319 0.96035 0.89186 0.97909 1.21022 1.28075 0.96082 1.10803 0.92276 1.24993 0.94937 0.98297 0.96058 1.69946 1.31763 1.18559 1.33135 0.86568 0.78849 0.79961 0.82135 1.20104 1.21272 1.20105 1.21775 1.01791 0.92135 0.98689 1.23338 0.99774 0.97979 0.96267 1.23094 1.02555 0.97262 0.96189 1.21601 1.01288 0.93359 0.97558 0.92806 0.92132 0.89386 0.77301 0.77496 0.92834 0.92851 0.96017 0.96014 0.92822 0.90351 0.90064 0.85851 0.85736 0.90433 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.36 37.15 0.31 -1.66 16 2 C 0.19 2.29 0.93 -130.11 -0.12 2.17 16 3 N -0.74 -9.71 5.15 -50.82 -0.26 -9.97 16 4 C 0.70 12.22 8.10 -86.92 -0.70 11.52 16 5 O -0.59 -12.34 13.82 5.28 0.07 -12.26 16 6 N -0.74 -13.22 5.56 -65.22 -0.36 -13.58 16 7 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 8 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 9 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 10 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 13 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 C -0.11 -1.30 5.37 -26.83 -0.14 -1.45 16 18 C -0.16 -1.51 10.77 -35.70 -0.38 -1.90 16 19 C -0.17 -1.51 10.78 -35.70 -0.38 -1.89 16 20 C -0.10 -0.91 6.04 -26.84 -0.16 -1.07 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.09 1.39 6.00 -51.93 -0.31 1.08 16 24 H 0.39 4.05 8.35 -40.82 -0.34 3.71 16 25 H 0.39 6.05 8.49 -40.82 -0.35 5.70 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 33 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 36 H 0.08 0.65 7.82 -51.93 -0.41 0.24 16 LS Contribution 299.85 15.07 4.52 4.52 Total: -1.00 -31.52 299.85 -8.05 -39.57 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.57 Total: 5.19 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.17 Total: -4.39 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.11 Total: -49.10 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.52 -8.05 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594235326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.652 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds