Wall clock time and date at job start Sun Mar 29 2020 22:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 110.91830 * 2 1 4 4 C 1.34774 * 119.99769 * 56.02842 * 3 2 1 5 5 O 1.21592 * 120.00301 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99902 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47300 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99822 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47196 * 59.99759 * 13 11 9 15 15 H 1.48494 * 109.47285 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46819 * 300.00256 * 13 11 9 17 17 C 1.54636 * 111.07139 * 123.98885 * 2 1 3 18 18 C 1.51094 * 104.72606 * 93.41172 * 17 2 1 19 19 C 1.30527 * 111.10401 * 16.44072 * 18 17 2 20 20 C 1.51096 * 111.10356 * 359.97438 * 19 18 17 21 21 H 1.09002 * 109.46846 * 60.69856 * 1 2 3 22 22 H 1.08998 * 109.47531 * 180.70173 * 1 2 3 23 23 H 1.09003 * 109.47325 * 300.70850 * 1 2 3 24 24 H 0.96999 * 120.00180 * 236.03825 * 3 2 1 25 25 H 0.96999 * 120.00047 * 359.97438 * 6 4 3 26 26 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 27 27 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 28 28 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 29 29 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 30 30 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 31 31 H 1.09000 * 110.38948 * 212.22890 * 17 2 1 32 32 H 1.09005 * 110.38333 * 334.60485 * 17 2 1 33 33 H 1.08005 * 124.45289 * 196.46043 * 18 17 2 34 34 H 1.07999 * 124.44832 * 180.02562 * 19 18 17 35 35 H 1.08997 * 110.38866 * 224.75159 * 20 19 18 36 36 H 1.08999 * 110.48482 * 102.42659 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6844 2.2308 0.9680 5 8 0.9180 1.8729 1.8415 6 7 2.1651 3.4899 0.9677 7 6 1.7648 4.4270 2.0203 8 6 2.4477 5.7764 1.7884 9 6 2.0355 6.7406 2.8707 10 1 1.3543 6.4229 3.6461 11 6 2.5281 8.0284 2.8710 12 7 3.3573 8.4155 1.9264 13 14 2.0177 9.2234 4.2130 14 1 2.4224 8.6842 5.5360 15 1 2.6803 10.5331 3.9878 16 1 0.5439 9.4030 4.1815 17 6 2.0859 -0.8067 1.1964 18 6 2.3051 -2.1990 0.6522 19 6 2.3047 -2.1989 -0.6531 20 6 2.0845 -0.8065 -1.1969 21 1 -0.3633 0.5030 -0.8962 22 1 -0.3634 -1.0275 0.0126 23 1 -0.3634 0.5248 0.8836 24 1 2.6645 1.6540 -0.6967 25 1 2.7768 3.7753 0.2711 26 1 0.6830 4.5583 1.9977 27 1 2.0627 4.0316 2.9914 28 1 3.5296 5.6448 1.8113 29 1 2.1503 6.1720 0.8172 30 1 3.7036 9.3215 1.9263 31 1 3.0289 -0.3793 1.5372 32 1 1.3610 -0.8269 2.0103 33 1 2.4437 -3.0790 1.2629 34 1 2.4428 -3.0787 -1.2641 35 1 1.3593 -0.8268 -2.0103 36 1 3.0261 -0.3775 -1.5395 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594235326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:17 Heat of formation + Delta-G solvation = -45.331630 kcal Electronic energy + Delta-G solvation = -16683.000781 eV Core-core repulsion = 13973.125274 eV Total energy + Delta-G solvation = -2709.875507 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47079 -39.49247 -36.54428 -34.95809 -34.67339 -31.83272 -30.34435 -29.21449 -26.97429 -26.33121 -23.14769 -22.19976 -20.63803 -20.08616 -18.91996 -18.35003 -17.56038 -16.57431 -16.49101 -16.30497 -15.79514 -15.16399 -15.02838 -14.53605 -14.31378 -13.92621 -13.29270 -13.20439 -13.02620 -12.94995 -12.88222 -12.57753 -12.52378 -12.22582 -12.08177 -11.90949 -11.61310 -11.45272 -10.93509 -10.59280 -10.28032 -9.82887 -9.69169 -8.23484 -6.33921 1.38092 1.42187 1.44765 1.52564 1.78454 2.21793 2.41911 3.11223 3.34806 3.54820 3.77477 3.99463 4.35558 4.41094 4.48409 4.53328 4.69917 4.75452 4.82696 4.84446 4.87962 4.95799 5.06880 5.12687 5.30523 5.38165 5.56012 5.60156 5.61840 5.69913 5.80648 5.99777 6.10496 6.18320 6.79124 7.18773 7.35475 7.67345 8.88281 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.064387 B = 0.003962 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.763524 B = 7065.185981 C = 7192.007078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.181 3.819 3 N -0.725 5.725 4 C 0.698 3.302 5 O -0.628 6.628 6 N -0.736 5.736 7 C 0.162 3.838 8 C 0.024 3.976 9 C -0.548 4.548 10 H 0.058 0.942 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.965 3.035 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.268 1.268 17 C -0.107 4.107 18 C -0.172 4.172 19 C -0.154 4.154 20 C -0.095 4.095 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.410 0.590 25 H 0.405 0.595 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.266 0.734 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.095 0.905 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -19.420 -8.636 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.094 3.906 3 N -0.382 5.382 4 C 0.398 3.602 5 O -0.509 6.509 6 N -0.391 5.391 7 C 0.038 3.962 8 C -0.013 4.013 9 C -0.587 4.587 10 H 0.077 0.923 11 C -0.191 4.191 12 N -0.566 5.566 13 Si 0.789 3.211 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.193 1.193 17 C -0.146 4.146 18 C -0.191 4.191 19 C -0.172 4.172 20 C -0.133 4.133 21 H 0.080 0.920 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.246 0.754 25 H 0.241 0.759 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.156 0.844 34 H 0.171 0.829 35 H 0.114 0.886 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.245 -19.570 -7.907 21.144 hybrid contribution 0.430 1.224 0.271 1.325 sum -0.815 -18.346 -7.636 19.889 Atomic orbital electron populations 1.22064 0.93909 1.02620 1.02365 1.21039 0.93830 0.79503 0.96205 1.45084 1.51923 1.11624 1.29552 1.16182 0.80654 0.80926 0.82439 1.90826 1.41232 1.78195 1.40674 1.45258 1.51434 1.10568 1.31829 1.21033 0.97987 0.88442 0.88747 1.19120 0.95224 0.90422 0.96546 1.21446 1.28394 0.97194 1.11622 0.92325 1.25868 0.94780 1.00092 0.98383 1.70050 1.32613 1.19187 1.34768 0.85498 0.78743 0.77607 0.79204 1.19350 1.20532 1.19333 1.21714 1.00214 0.94329 0.98305 1.23307 1.01880 0.96836 0.97035 1.23359 1.00240 0.97816 0.95816 1.21617 1.02320 0.92948 0.96384 0.92045 0.90448 0.93087 0.75370 0.75947 0.93943 0.94036 0.97385 0.97336 0.92528 0.92027 0.92674 0.84438 0.82882 0.88633 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.36 71.98 0.60 -3.12 16 2 C 0.18 4.09 0.93 4.71 0.00 4.10 16 3 N -0.73 -18.21 5.15 -432.95 -2.23 -20.43 16 4 C 0.70 24.51 8.10 179.06 1.45 25.96 16 5 O -0.63 -26.92 13.82 -4.01 -0.06 -26.98 16 6 N -0.74 -26.42 5.56 -478.51 -2.66 -29.08 16 7 C 0.16 7.21 5.61 86.38 0.48 7.69 16 8 C 0.02 1.25 5.09 29.85 0.15 1.40 16 9 C -0.55 -31.03 9.11 25.60 0.23 -30.80 16 10 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 11 C 0.01 0.43 5.46 84.65 0.46 0.89 16 12 N -0.93 -54.65 13.29 21.45 0.28 -54.37 16 13 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 17 C -0.11 -2.63 5.37 30.53 0.16 -2.47 16 18 C -0.17 -3.04 10.77 26.26 0.28 -2.75 16 19 C -0.15 -2.14 10.78 26.26 0.28 -1.86 16 20 C -0.10 -1.40 6.04 30.52 0.18 -1.22 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.05 1.66 6.00 -2.39 -0.01 1.64 16 24 H 0.41 7.61 8.35 -92.71 -0.77 6.84 16 25 H 0.41 12.34 8.49 -92.71 -0.79 11.55 16 26 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.06 1.67 8.08 -2.39 -0.02 1.65 16 32 H 0.05 1.60 7.91 -2.38 -0.02 1.58 16 33 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 34 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.10 1.14 7.91 -2.39 -0.02 1.12 16 36 H 0.10 1.17 7.82 -2.39 -0.02 1.15 16 Total: -1.00 -68.55 299.85 1.18 -67.36 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.49 Total: 19.74 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 4.30 Total: -2.19 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -4.60 Total: -103.89 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.06 Total: -26.98 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -68.55 1.18 -67.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594235326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.032 kcal (2) G-P(sol) polarization free energy of solvation -68.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds