Wall clock time and date at job start Sun Mar 29 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00082 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99978 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00217 * 180.02562 * 14 12 11 16 16 H 1.09007 * 115.51671 * 9.57947 * 15 14 12 17 17 C 1.52994 * 117.44642 * 224.22501 * 15 14 12 18 18 H 1.09004 * 119.52478 * 4.09477 * 17 15 14 19 19 C 1.57595 * 116.17092 * 161.49442 * 17 15 14 20 20 N 1.48562 * 104.65365 * 87.34085 * 19 17 15 21 21 C 1.48562 * 104.21799 * 319.89586 * 20 19 17 22 22 C 1.52998 * 117.44733 * 154.99646 * 15 14 12 23 23 H 1.09006 * 119.52708 * 355.90537 * 22 15 14 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 30 30 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 31 31 H 0.97002 * 119.99767 * 359.97438 * 14 12 11 32 32 H 1.09000 * 110.91374 * 328.27417 * 19 17 15 33 33 H 1.09000 * 109.95796 * 205.92295 * 19 17 15 34 34 H 1.00897 * 111.00687 * 200.33977 * 20 19 17 35 35 H 1.08998 * 110.41261 * 280.69865 * 21 20 19 36 36 H 1.09007 * 110.51235 * 158.31413 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4595 -6.1325 -0.0024 13 8 3.6519 -5.9109 -0.0027 14 7 2.0102 -7.4032 -0.0034 15 6 2.9622 -8.5167 -0.0032 16 1 4.0045 -8.2434 0.1615 17 6 2.6816 -9.6845 -0.9510 18 1 1.8362 -9.6285 -1.6369 19 6 3.9022 -10.6285 -1.2713 20 7 3.8868 -11.6438 -0.1868 21 6 3.5506 -10.8679 1.0347 22 6 2.4846 -9.8527 0.5696 23 1 1.4925 -9.9219 1.0160 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 0.8532 -5.0450 0.8876 30 1 0.8540 -5.0446 -0.8922 31 1 1.0565 -7.5804 -0.0035 32 1 4.8390 -10.0715 -1.2572 33 1 3.7591 -11.1057 -2.2408 34 1 4.7874 -12.0893 -0.0957 35 1 4.4323 -10.3483 1.4097 36 1 3.1413 -11.5237 1.8032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594444812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:32 Heat of formation + Delta-G solvation = -18.362671 kcal Electronic energy + Delta-G solvation = -16124.593238 eV Core-core repulsion = 13415.887193 eV Total energy + Delta-G solvation = -2708.706045 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30582 -38.89055 -34.77799 -34.16948 -32.22184 -31.58914 -28.56287 -27.89253 -24.47534 -23.18277 -21.20887 -20.71421 -20.39805 -19.72253 -17.08179 -17.01328 -16.22032 -16.06261 -15.33461 -14.51947 -14.35310 -14.10715 -13.52870 -13.45173 -13.08605 -12.55710 -12.46848 -12.27062 -11.80440 -11.77999 -11.42402 -11.06344 -10.80632 -10.62388 -10.54081 -10.38637 -9.76015 -9.68272 -9.29182 -9.03618 -8.95178 -8.84411 -8.32064 -5.97785 -3.99226 2.72309 2.97076 3.34906 3.40676 3.45540 3.48499 3.92218 4.29547 4.43594 4.49420 4.60277 4.74143 4.86565 5.02646 5.11808 5.29618 5.38355 5.50110 5.55651 5.68753 5.68907 5.76737 5.80913 6.22112 6.23778 6.41922 6.71245 6.87210 6.91752 7.15161 7.50469 7.70642 7.83183 8.02849 8.36741 8.46773 9.07879 9.64803 11.13754 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.075606 B = 0.003366 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.254307 B = 8316.145593 C = 8457.459865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.518 3.482 13 O -0.534 6.534 14 N -0.711 5.711 15 C 0.115 3.885 16 H 0.132 0.868 17 C -0.173 4.173 18 H 0.123 0.877 19 C 0.065 3.935 20 N -0.667 5.667 21 C 0.066 3.934 22 C -0.177 4.177 23 H 0.118 0.882 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.402 0.598 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.340 0.660 35 H 0.046 0.954 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -22.145 0.024 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.307 3.693 13 O -0.410 6.410 14 N -0.362 5.362 15 C 0.007 3.993 16 H 0.149 0.851 17 C -0.193 4.193 18 H 0.141 0.859 19 C -0.064 4.064 20 N -0.296 5.296 21 C -0.063 4.063 22 C -0.197 4.197 23 H 0.136 0.864 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.237 0.763 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.156 0.844 35 H 0.064 0.936 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.562 -22.130 -0.097 22.415 hybrid contribution 0.588 1.232 0.161 1.374 sum 4.150 -20.899 0.063 21.307 Atomic orbital electron populations 1.69967 1.06041 1.26547 1.51210 1.25022 0.94863 0.99267 0.95380 0.86586 0.79896 0.83391 0.78106 1.20672 1.21258 1.19830 1.21273 0.93201 0.91013 1.50156 0.92566 1.19134 0.93959 0.91440 0.97153 1.21459 0.98673 0.91464 1.01749 1.21859 0.98078 0.93856 1.03933 1.21350 0.90512 0.83381 0.74096 1.90673 1.17401 1.84548 1.48329 1.45516 1.09266 1.04951 1.76430 1.21717 0.95457 0.81640 1.00465 0.85064 1.24653 1.01041 1.00435 0.93199 0.85893 1.22968 0.95564 0.91783 0.96083 1.63814 1.35261 1.26997 1.03563 1.22406 0.96615 0.94048 0.93226 1.23854 1.01306 0.97416 0.97105 0.86393 0.93062 0.96575 0.96581 0.92649 0.92657 0.89169 0.89177 0.76339 0.93395 0.89545 0.84429 0.93577 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.06 4.44 -26.73 -0.12 -2.18 16 11 C -0.14 -2.24 5.70 -27.88 -0.16 -2.40 16 12 C 0.52 8.26 7.83 -10.98 -0.09 8.18 16 13 O -0.53 -10.65 15.55 5.56 0.09 -10.57 16 14 N -0.71 -8.40 5.56 -53.81 -0.30 -8.69 16 15 C 0.11 1.27 5.92 -67.94 -0.40 0.87 16 16 H 0.13 1.71 7.40 -51.92 -0.38 1.32 16 17 C -0.17 -1.61 7.33 -87.46 -0.64 -2.25 16 18 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 19 C 0.07 0.55 7.33 -0.39 0.00 0.55 16 20 N -0.67 -5.38 7.63 -107.73 -0.82 -6.20 16 21 C 0.07 0.53 7.27 -2.18 -0.02 0.52 16 22 C -0.18 -1.58 6.97 -89.24 -0.62 -2.21 16 23 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.40 3.59 8.83 -40.82 -0.36 3.23 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.34 2.12 8.92 -39.29 -0.35 1.77 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 LS Contribution 304.03 15.07 4.58 4.58 Total: -1.00 -33.25 304.03 -9.04 -42.29 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.71 Total: 0.34 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -2.60 Total: -12.37 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.38 Total: -41.31 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.25 -9.04 -42.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594444812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.924 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds