Wall clock time and date at job start Sun Mar 29 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00082 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99978 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00217 * 180.02562 * 14 12 11 16 16 H 1.09007 * 115.51671 * 9.57947 * 15 14 12 17 17 C 1.52994 * 117.44642 * 224.22501 * 15 14 12 18 18 H 1.09004 * 119.52478 * 4.09477 * 17 15 14 19 19 C 1.57595 * 116.17092 * 161.49442 * 17 15 14 20 20 N 1.48562 * 104.65365 * 87.34085 * 19 17 15 21 21 C 1.48562 * 104.21799 * 319.89586 * 20 19 17 22 22 C 1.52998 * 117.44733 * 154.99646 * 15 14 12 23 23 H 1.09006 * 119.52708 * 355.90537 * 22 15 14 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 30 30 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 31 31 H 0.97002 * 119.99767 * 359.97438 * 14 12 11 32 32 H 1.09000 * 110.91374 * 328.27417 * 19 17 15 33 33 H 1.09000 * 109.95796 * 205.92295 * 19 17 15 34 34 H 1.00897 * 111.00687 * 200.33977 * 20 19 17 35 35 H 1.08998 * 110.41261 * 280.69865 * 21 20 19 36 36 H 1.09007 * 110.51235 * 158.31413 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4595 -6.1325 -0.0024 13 8 3.6519 -5.9109 -0.0027 14 7 2.0102 -7.4032 -0.0034 15 6 2.9622 -8.5167 -0.0032 16 1 4.0045 -8.2434 0.1615 17 6 2.6816 -9.6845 -0.9510 18 1 1.8362 -9.6285 -1.6369 19 6 3.9022 -10.6285 -1.2713 20 7 3.8868 -11.6438 -0.1868 21 6 3.5506 -10.8679 1.0347 22 6 2.4846 -9.8527 0.5696 23 1 1.4925 -9.9219 1.0160 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 0.8532 -5.0450 0.8876 30 1 0.8540 -5.0446 -0.8922 31 1 1.0565 -7.5804 -0.0035 32 1 4.8390 -10.0715 -1.2572 33 1 3.7591 -11.1057 -2.2408 34 1 4.7874 -12.0893 -0.0957 35 1 4.4323 -10.3483 1.4097 36 1 3.1413 -11.5237 1.8032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594444812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:32 Heat of formation + Delta-G solvation = -42.883208 kcal Electronic energy + Delta-G solvation = -16125.656528 eV Core-core repulsion = 13415.887193 eV Total energy + Delta-G solvation = -2709.769335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.25270 -39.96839 -36.18423 -35.65572 -34.05629 -32.68742 -29.69145 -29.21552 -26.12837 -24.34730 -22.35378 -21.99934 -21.22324 -21.03687 -18.62580 -17.94598 -17.78741 -17.08514 -16.72943 -16.48101 -15.45305 -15.05427 -14.74076 -14.68719 -14.24504 -13.91208 -13.74026 -13.38244 -13.15764 -13.08809 -12.63940 -12.52247 -12.45654 -12.40473 -11.95968 -11.55980 -11.48661 -11.27719 -11.16612 -10.82117 -10.54508 -9.81003 -9.59671 -8.20656 -6.30577 1.39585 1.40612 1.51807 1.52184 1.95603 2.41588 2.67362 3.12425 3.26433 3.54271 3.70331 3.81405 3.86339 4.05406 4.17677 4.23671 4.26370 4.44690 4.57498 4.73036 4.86474 4.87969 4.96331 5.05133 5.09286 5.09869 5.19152 5.45299 5.54400 5.58183 5.75240 5.86731 6.27131 6.32598 6.48016 6.84992 7.20567 7.38169 8.90902 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.075606 B = 0.003366 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.254307 B = 8316.145593 C = 8457.459865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.083 4.083 11 C -0.129 4.129 12 C 0.521 3.479 13 O -0.582 6.582 14 N -0.690 5.690 15 C 0.090 3.910 16 H 0.108 0.892 17 C -0.167 4.167 18 H 0.133 0.867 19 C 0.064 3.936 20 N -0.670 5.670 21 C 0.064 3.936 22 C -0.162 4.162 23 H 0.133 0.867 24 H 0.265 0.735 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.419 0.581 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.350 0.650 35 H 0.043 0.957 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -23.269 0.016 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.122 4.122 11 C -0.168 4.168 12 C 0.310 3.690 13 O -0.462 6.462 14 N -0.340 5.340 15 C -0.017 4.017 16 H 0.126 0.874 17 C -0.187 4.187 18 H 0.151 0.849 19 C -0.066 4.066 20 N -0.300 5.300 21 C -0.065 4.065 22 C -0.182 4.182 23 H 0.151 0.849 24 H 0.074 0.926 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.257 0.743 32 H 0.062 0.938 33 H 0.115 0.885 34 H 0.167 0.833 35 H 0.062 0.938 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.208 -23.310 -0.107 23.530 hybrid contribution 0.676 1.512 0.165 1.665 sum 3.884 -21.797 0.059 22.141 Atomic orbital electron populations 1.70068 1.07490 1.27800 1.51605 1.25906 0.95833 1.03072 0.94687 0.85498 0.78633 0.78695 0.78549 1.19712 1.20287 1.19277 1.21702 0.93355 0.92856 1.50717 0.93079 1.19021 0.94192 0.92311 0.95607 1.21172 0.97672 0.92989 1.00323 1.21681 0.97794 0.91323 1.06013 1.21133 0.89495 0.84524 0.73857 1.90661 1.19144 1.85355 1.51018 1.45212 1.10391 1.03852 1.74584 1.21705 0.94313 0.82096 1.03601 0.87448 1.24738 1.01563 0.98673 0.93741 0.84899 1.23011 0.95024 0.91766 0.96771 1.63827 1.36143 1.26709 1.03328 1.22482 0.96398 0.94073 0.93593 1.23948 1.01990 0.95254 0.96961 0.84931 0.92645 0.97976 0.97985 0.94084 0.94100 0.87083 0.87099 0.74331 0.93842 0.88549 0.83266 0.93823 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 2 C 0.00 0.17 5.46 84.65 0.46 0.64 16 3 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.55 -32.35 9.11 25.60 0.23 -32.12 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.08 -3.66 4.44 30.59 0.14 -3.52 16 11 C -0.13 -4.08 5.70 29.85 0.17 -3.91 16 12 C 0.52 16.36 7.83 87.66 0.69 17.05 16 13 O -0.58 -23.68 15.55 -3.04 -0.05 -23.73 16 14 N -0.69 -15.28 5.56 -442.54 -2.46 -17.74 16 15 C 0.09 1.90 5.92 44.99 0.27 2.17 16 16 H 0.11 2.85 7.40 -2.38 -0.02 2.83 16 17 C -0.17 -2.79 7.33 -8.75 -0.06 -2.85 16 18 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 19 C 0.06 0.96 7.33 87.61 0.64 1.61 16 20 N -0.67 -9.43 7.63 -494.75 -3.77 -13.20 16 21 C 0.06 0.90 7.27 86.45 0.63 1.53 16 22 C -0.16 -2.54 6.97 -9.90 -0.07 -2.61 16 23 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 24 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 25 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 28 H 0.04 1.88 8.10 -2.38 -0.02 1.86 16 29 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.11 3.07 8.14 -2.39 -0.02 3.06 16 31 H 0.42 6.43 8.83 -92.71 -0.82 5.61 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.35 3.73 8.92 -89.70 -0.80 2.93 16 35 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.10 1.18 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -71.93 304.03 -1.27 -73.21 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -0.54 Total: 10.88 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 3.24 Total: -20.51 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -5.95 Total: -87.13 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -71.93 -1.27 -73.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594444812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.323 kcal (2) G-P(sol) polarization free energy of solvation -71.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds