Wall clock time and date at job start Sun Mar 29 2020 22:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 H 1.09000 * 109.47676 * 179.35809 * 3 2 1 5 5 C 1.50703 * 109.46984 * 299.36077 * 3 2 1 6 6 H 1.07998 * 120.00701 * 119.99998 * 5 3 2 7 7 C 1.37881 * 119.99548 * 299.99817 * 5 3 2 8 8 N 1.31515 * 119.99886 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 120.00227 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47402 * 90.00185 * 9 7 5 11 11 H 1.48503 * 109.47565 * 209.99979 * 9 7 5 12 12 H 1.48504 * 109.47325 * 330.00213 * 9 7 5 13 13 N 1.46907 * 109.47027 * 59.35422 * 3 2 1 14 14 C 1.46903 * 110.99391 * 86.01938 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.49459 * 14 13 3 16 16 N 1.34480 * 126.16132 * 269.68406 * 15 14 13 17 17 C 1.30258 * 108.70210 * 179.82439 * 16 15 14 18 18 C 1.50697 * 125.62124 * 180.18977 * 17 16 15 19 19 O 1.33972 * 108.75739 * 0.44242 * 17 16 15 20 20 C 1.34327 * 126.16886 * 89.99591 * 15 14 13 21 21 C 1.50700 * 126.44137 * 0.02562 * 20 15 14 22 22 H 1.08997 * 109.46940 * 55.56999 * 1 2 3 23 23 H 1.08996 * 109.47523 * 295.56819 * 1 2 3 24 24 H 1.09001 * 109.46905 * 175.56409 * 1 2 3 25 25 H 1.09004 * 109.46837 * 119.99663 * 2 1 3 26 26 H 1.09001 * 109.47328 * 240.00167 * 2 1 3 27 27 H 0.96993 * 120.00309 * 179.97438 * 8 7 5 28 28 H 1.00898 * 110.99788 * 209.97032 * 13 3 2 29 29 H 1.08994 * 109.46864 * 295.48624 * 14 13 3 30 30 H 1.08994 * 109.47486 * 55.49311 * 14 13 3 31 31 H 1.09005 * 109.46653 * 180.31945 * 18 17 16 32 32 H 1.08997 * 109.47303 * 300.31953 * 18 17 16 33 33 H 1.08994 * 109.47105 * 60.32202 * 18 17 16 34 34 H 1.09003 * 109.46923 * 90.00134 * 21 20 15 35 35 H 1.08998 * 109.47035 * 209.99401 * 21 20 15 36 36 H 1.08999 * 109.47189 * 329.99587 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 0.0115 5 6 1.5506 2.1483 -1.2383 6 1 0.9287 3.0267 -1.1492 7 6 1.8970 1.6725 -2.4853 8 7 1.4704 2.2887 -3.5660 9 14 2.9732 0.1536 -2.6396 10 1 2.1157 -1.0578 -2.6893 11 1 3.7781 0.2416 -3.8844 12 1 3.8815 0.0694 -1.4677 13 7 1.5376 2.1395 1.1916 14 6 2.4222 1.9176 2.3432 15 6 1.9376 2.7341 3.5135 16 7 2.3111 3.9908 3.8133 17 6 1.6824 4.3678 4.8900 18 6 1.8150 5.7117 5.5587 19 8 0.9025 3.3618 5.3080 20 6 1.0592 2.3359 4.4485 21 6 0.3775 0.9939 4.5225 22 1 -0.3633 0.5810 -0.8476 23 1 -0.3634 0.4435 0.9270 24 1 -0.3633 -1.0246 -0.0795 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.7142 1.9543 -4.4432 28 1 1.4194 3.1251 1.0110 29 1 2.4139 0.8607 2.6094 30 1 3.4373 2.2193 2.0852 31 1 1.1762 5.7429 6.4414 32 1 2.8521 5.8694 5.8549 33 1 1.5127 6.4949 4.8635 34 1 0.9864 0.3093 5.1130 35 1 -0.5996 1.1081 4.9919 36 1 0.2528 0.5937 3.5164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:19 Heat of formation + Delta-G solvation = 16.221234 kcal Electronic energy + Delta-G solvation = -17175.615222 eV Core-core repulsion = 14468.408848 eV Total energy + Delta-G solvation = -2707.206374 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.15143 -36.80365 -34.76192 -33.48632 -32.08083 -31.02724 -30.07831 -27.50965 -25.59239 -23.79421 -23.08897 -21.46261 -20.36541 -19.31869 -16.78280 -16.69938 -16.11860 -15.50426 -14.51380 -14.11431 -13.80378 -13.69705 -13.43464 -13.38382 -12.89477 -12.73737 -12.69936 -12.49443 -12.27590 -11.89866 -11.61991 -11.08956 -10.94005 -10.57143 -10.53907 -10.32374 -10.15666 -9.94554 -9.32781 -8.95668 -8.56081 -8.32583 -7.48175 -6.08075 -4.06798 1.60337 2.79065 2.83920 3.27999 3.37493 3.39417 4.11743 4.40029 4.89608 4.99395 5.14534 5.23438 5.28598 5.34148 5.44921 5.47433 5.54867 5.76407 5.94896 6.05117 6.14352 6.21123 6.24579 6.29229 6.46407 6.53310 6.72365 6.89740 7.08762 7.25563 7.48426 7.61124 7.91601 7.95258 8.33837 8.61983 8.96874 9.54077 11.04888 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035027 B = 0.006109 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.185410 B = 4582.213145 C = 4968.024116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.184 3.816 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.669 5.669 14 C 0.137 3.863 15 C 0.000 4.000 16 N -0.474 5.474 17 C 0.173 3.827 18 C -0.051 4.051 19 O -0.208 6.208 20 C -0.038 4.038 21 C -0.066 4.066 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.020 0.980 25 H 0.031 0.969 26 H 0.042 0.958 27 H 0.264 0.736 28 H 0.344 0.656 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 -0.196 17.515 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.076 3.924 4 H 0.020 0.980 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.301 5.301 14 C 0.007 3.993 15 C -0.120 4.120 16 N -0.204 5.204 17 C -0.034 4.034 18 C -0.109 4.109 19 O -0.096 6.096 20 C -0.091 4.091 21 C -0.122 4.122 22 H 0.087 0.913 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.326 -0.317 17.191 17.197 hybrid contribution 0.876 -0.676 -0.143 1.116 sum 0.550 -0.993 17.048 17.086 Atomic orbital electron populations 1.21472 0.95544 0.98302 1.02904 1.21756 0.97388 0.98112 0.97842 1.19615 0.93016 0.91291 0.88517 0.98010 1.21012 1.32420 1.13223 0.88390 0.90389 1.24889 0.95489 0.96797 0.95711 1.69887 1.45450 1.40463 0.97835 0.86862 0.80852 0.83733 0.76831 1.20376 1.22568 1.19370 1.60621 1.47790 1.17127 1.04575 1.20230 0.94918 0.96552 0.87586 1.21563 0.99330 0.91852 0.99246 1.70320 1.24720 1.12346 1.13038 1.26110 0.91310 0.92536 0.93409 1.20161 1.04220 0.86312 1.00157 1.84338 1.55493 1.21882 1.47888 1.23161 1.02502 0.91498 0.91937 1.20295 0.99435 0.87440 1.05079 0.91317 0.92815 0.96071 0.95063 0.94021 0.92615 0.83801 0.90328 0.94224 0.89788 0.88888 0.88687 0.90430 0.90772 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.52 37.16 0.35 -2.22 16 2 C -0.11 -2.46 5.29 -26.73 -0.14 -2.60 16 3 C 0.18 4.34 1.90 -68.86 -0.13 4.21 16 4 H 0.00 0.06 6.77 -51.93 -0.35 -0.29 16 5 C -0.51 -14.17 7.87 -34.44 -0.27 -14.44 16 6 H 0.08 2.36 7.85 -52.49 -0.41 1.94 16 7 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 8 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 9 Si 0.89 22.04 24.38 -169.99 -4.14 17.90 16 10 H -0.28 -6.70 6.86 56.52 0.39 -6.32 16 11 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 13 N -0.67 -13.88 5.62 -109.21 -0.61 -14.49 16 14 C 0.14 2.48 5.70 -4.97 -0.03 2.45 16 15 C 0.00 0.00 6.57 -82.81 -0.54 -0.54 16 16 N -0.47 -8.28 11.29 -7.35 -0.08 -8.36 16 17 C 0.17 2.49 8.34 -12.95 -0.11 2.38 16 18 C -0.05 -0.45 10.51 36.00 0.38 -0.07 16 19 O -0.21 -3.10 10.78 5.34 0.06 -3.05 16 20 C -0.04 -0.57 7.39 -35.69 -0.26 -0.84 16 21 C -0.07 -0.76 10.04 36.01 0.36 -0.40 16 22 H 0.07 1.61 7.09 -51.93 -0.37 1.24 16 23 H 0.05 1.03 7.73 -51.93 -0.40 0.63 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.60 7.62 -51.93 -0.40 0.20 16 26 H 0.04 0.96 3.26 -51.93 -0.17 0.80 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.34 7.62 8.13 -39.29 -0.32 7.30 16 29 H 0.08 1.29 7.27 -51.93 -0.38 0.91 16 30 H 0.04 0.76 7.94 -51.93 -0.41 0.35 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.27 7.79 -51.93 -0.40 0.87 16 LS Contribution 293.72 15.07 4.43 4.43 Total: -1.00 -31.71 293.72 -5.40 -37.11 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.33 Total: 3.08 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -0.49 Total: -10.07 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.08 Total: -49.40 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: 0.06 Total: -3.05 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.71 -5.40 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.331 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds