Wall clock time and date at job start Sun Mar 29 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 H 1.09000 * 109.47676 * 179.35809 * 3 2 1 5 5 C 1.50703 * 109.46984 * 299.36077 * 3 2 1 6 6 H 1.07998 * 120.00701 * 119.99998 * 5 3 2 7 7 C 1.37881 * 119.99548 * 299.99817 * 5 3 2 8 8 N 1.31515 * 119.99886 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 120.00227 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47402 * 90.00185 * 9 7 5 11 11 H 1.48503 * 109.47565 * 209.99979 * 9 7 5 12 12 H 1.48504 * 109.47325 * 330.00213 * 9 7 5 13 13 N 1.46907 * 109.47027 * 59.35422 * 3 2 1 14 14 C 1.46903 * 110.99391 * 86.01938 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.49459 * 14 13 3 16 16 N 1.34480 * 126.16132 * 269.68406 * 15 14 13 17 17 C 1.30258 * 108.70210 * 179.82439 * 16 15 14 18 18 C 1.50697 * 125.62124 * 180.18977 * 17 16 15 19 19 O 1.33972 * 108.75739 * 0.44242 * 17 16 15 20 20 C 1.34327 * 126.16886 * 89.99591 * 15 14 13 21 21 C 1.50700 * 126.44137 * 0.02562 * 20 15 14 22 22 H 1.08997 * 109.46940 * 55.56999 * 1 2 3 23 23 H 1.08996 * 109.47523 * 295.56819 * 1 2 3 24 24 H 1.09001 * 109.46905 * 175.56409 * 1 2 3 25 25 H 1.09004 * 109.46837 * 119.99663 * 2 1 3 26 26 H 1.09001 * 109.47328 * 240.00167 * 2 1 3 27 27 H 0.96993 * 120.00309 * 179.97438 * 8 7 5 28 28 H 1.00898 * 110.99788 * 209.97032 * 13 3 2 29 29 H 1.08994 * 109.46864 * 295.48624 * 14 13 3 30 30 H 1.08994 * 109.47486 * 55.49311 * 14 13 3 31 31 H 1.09005 * 109.46653 * 180.31945 * 18 17 16 32 32 H 1.08997 * 109.47303 * 300.31953 * 18 17 16 33 33 H 1.08994 * 109.47105 * 60.32202 * 18 17 16 34 34 H 1.09003 * 109.46923 * 90.00134 * 21 20 15 35 35 H 1.08998 * 109.47035 * 209.99401 * 21 20 15 36 36 H 1.08999 * 109.47189 * 329.99587 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 0.0115 5 6 1.5506 2.1483 -1.2383 6 1 0.9287 3.0267 -1.1492 7 6 1.8970 1.6725 -2.4853 8 7 1.4704 2.2887 -3.5660 9 14 2.9732 0.1536 -2.6396 10 1 2.1157 -1.0578 -2.6893 11 1 3.7781 0.2416 -3.8844 12 1 3.8815 0.0694 -1.4677 13 7 1.5376 2.1395 1.1916 14 6 2.4222 1.9176 2.3432 15 6 1.9376 2.7341 3.5135 16 7 2.3111 3.9908 3.8133 17 6 1.6824 4.3678 4.8900 18 6 1.8150 5.7117 5.5587 19 8 0.9025 3.3618 5.3080 20 6 1.0592 2.3359 4.4485 21 6 0.3775 0.9939 4.5225 22 1 -0.3633 0.5810 -0.8476 23 1 -0.3634 0.4435 0.9270 24 1 -0.3633 -1.0246 -0.0795 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.7142 1.9543 -4.4432 28 1 1.4194 3.1251 1.0110 29 1 2.4139 0.8607 2.6094 30 1 3.4373 2.2193 2.0852 31 1 1.1762 5.7429 6.4414 32 1 2.8521 5.8694 5.8549 33 1 1.5127 6.4949 4.8635 34 1 0.9864 0.3093 5.1130 35 1 -0.5996 1.1081 4.9919 36 1 0.2528 0.5937 3.5164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:18 Heat of formation + Delta-G solvation = -8.738929 kcal Electronic energy + Delta-G solvation = -17176.697576 eV Core-core repulsion = 14468.408848 eV Total energy + Delta-G solvation = -2708.288728 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.30041 -38.50925 -36.10577 -34.78671 -33.93590 -32.62124 -30.91019 -29.23121 -27.11463 -25.08720 -24.90147 -22.64550 -21.62851 -21.10660 -18.68036 -17.85488 -17.54131 -17.22987 -15.94645 -15.55923 -15.43954 -15.13937 -14.87562 -14.68699 -14.26341 -14.14468 -13.61995 -13.50240 -13.48544 -13.17492 -13.03130 -12.83356 -12.59530 -12.39812 -12.10339 -12.00533 -11.80589 -11.44119 -11.23285 -10.94390 -10.68494 -9.49768 -9.17056 -8.29602 -6.32497 0.48448 1.30744 1.35347 1.45086 1.61305 1.76420 2.31709 3.06305 3.08559 3.61732 3.80943 3.90526 4.29342 4.34942 4.42894 4.49872 4.58787 4.64907 4.67670 4.69869 4.74215 4.88426 4.94408 4.96799 5.14012 5.17780 5.25325 5.37166 5.37990 5.43737 5.64565 5.81194 5.96881 6.42406 6.60143 6.76534 6.81039 7.32424 8.87139 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035027 B = 0.006109 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.185410 B = 4582.213145 C = 4968.024116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.113 4.113 3 C 0.189 3.811 4 H -0.008 1.008 5 C -0.511 4.511 6 H 0.035 0.965 7 C 0.018 3.982 8 N -0.947 5.947 9 Si 0.947 3.053 10 H -0.261 1.261 11 H -0.300 1.300 12 H -0.252 1.252 13 N -0.662 5.662 14 C 0.145 3.855 15 C -0.035 4.035 16 N -0.517 5.517 17 C 0.177 3.823 18 C -0.051 4.051 19 O -0.210 6.210 20 C -0.031 4.031 21 C -0.065 4.065 22 H 0.029 0.971 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.330 0.670 29 H 0.101 0.899 30 H 0.024 0.976 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 -1.876 19.984 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.151 4.151 3 C 0.080 3.920 4 H 0.010 0.990 5 C -0.549 4.549 6 H 0.053 0.947 7 C -0.180 4.180 8 N -0.588 5.588 9 Si 0.774 3.226 10 H -0.187 1.187 11 H -0.228 1.228 12 H -0.176 1.176 13 N -0.293 5.293 14 C 0.015 3.985 15 C -0.154 4.154 16 N -0.248 5.248 17 C -0.030 4.030 18 C -0.108 4.108 19 O -0.098 6.098 20 C -0.085 4.085 21 C -0.121 4.121 22 H 0.048 0.952 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.119 0.881 30 H 0.042 0.958 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.160 -2.009 19.686 19.789 hybrid contribution 0.774 -0.012 -0.820 1.128 sum 0.614 -2.022 18.865 18.983 Atomic orbital electron populations 1.21376 0.94823 0.99488 1.01785 1.21724 0.98037 0.96367 0.98993 1.19480 0.92217 0.92584 0.87760 0.99032 1.21225 1.31124 1.12046 0.90523 0.94671 1.25711 0.96986 1.00053 0.95243 1.70035 1.47563 1.42652 0.98515 0.85876 0.79365 0.80236 0.77111 1.18697 1.22842 1.17599 1.60621 1.48348 1.15893 1.04392 1.20186 0.93408 0.98037 0.86863 1.21481 1.01406 0.92436 1.00064 1.70281 1.26590 1.12999 1.14918 1.27168 0.89676 0.93625 0.92491 1.20474 1.05927 0.83448 1.00936 1.84376 1.55581 1.22031 1.47842 1.23730 1.01314 0.92493 0.90928 1.20459 1.00499 0.85796 1.05379 0.95161 0.91671 0.93213 0.91536 0.94999 0.92550 0.85348 0.88126 0.95816 0.87094 0.87307 0.87909 0.87906 0.89048 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.61 9.52 71.98 0.69 -3.93 16 2 C -0.11 -4.66 5.29 30.59 0.16 -4.50 16 3 C 0.19 8.82 1.90 44.17 0.08 8.91 16 4 H -0.01 -0.38 6.77 -2.39 -0.02 -0.40 16 5 C -0.51 -29.12 7.87 25.60 0.20 -28.92 16 6 H 0.04 2.25 7.85 -2.91 -0.02 2.23 16 7 C 0.02 1.03 5.45 84.66 0.46 1.49 16 8 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 9 Si 0.95 45.22 24.38 68.60 1.67 46.89 16 10 H -0.26 -11.76 6.86 99.48 0.68 -11.08 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 12 H -0.25 -11.26 6.53 99.48 0.65 -10.61 16 13 N -0.66 -27.45 5.62 -499.44 -2.81 -30.25 16 14 C 0.14 5.11 5.70 85.56 0.49 5.59 16 15 C -0.04 -1.19 6.57 41.26 0.27 -0.92 16 16 N -0.52 -17.91 11.29 -291.97 -3.30 -21.21 16 17 C 0.18 4.85 8.34 88.34 0.74 5.59 16 18 C -0.05 -0.78 10.51 71.23 0.75 -0.03 16 19 O -0.21 -5.85 10.78 -3.81 -0.04 -5.89 16 20 C -0.03 -0.88 7.39 24.79 0.18 -0.70 16 21 C -0.06 -1.30 10.04 71.24 0.72 -0.58 16 22 H 0.03 1.39 7.09 -2.39 -0.02 1.38 16 23 H 0.06 2.37 7.73 -2.39 -0.02 2.35 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 2.28 7.62 -2.39 -0.02 2.26 16 26 H 0.03 1.38 3.26 -2.39 -0.01 1.37 16 27 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.33 15.16 8.13 -89.70 -0.73 14.43 16 29 H 0.10 3.05 7.27 -2.39 -0.02 3.04 16 30 H 0.02 0.91 7.94 -2.39 -0.02 0.89 16 31 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 2.09 7.79 -2.39 -0.02 2.08 16 Total: -1.00 -70.83 293.72 0.83 -70.00 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.27 Total: 17.70 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.74 Total: -17.99 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -5.80 Total: -110.70 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.04 Total: -5.89 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.67 Total: 46.89 kcal Total: -70.83 0.83 -70.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.257 kcal (2) G-P(sol) polarization free energy of solvation -70.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds