Wall clock time and date at job start Sun Mar 29 2020 22:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46801 * 2 1 4 4 H 1.08996 * 109.46610 * 177.92516 * 3 2 1 5 5 C 1.50701 * 109.47171 * 57.92821 * 3 2 1 6 6 H 1.08001 * 119.99648 * 240.00120 * 5 3 2 7 7 C 1.37872 * 120.00011 * 59.99600 * 5 3 2 8 8 N 1.31507 * 120.00294 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99684 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47041 * 60.00415 * 9 7 5 11 11 H 1.48498 * 109.46767 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47187 * 300.00236 * 9 7 5 13 13 N 1.46900 * 109.47235 * 297.92445 * 3 2 1 14 14 C 1.46895 * 111.00006 * 273.74019 * 13 3 2 15 15 C 1.50706 * 109.47003 * 175.10362 * 14 13 3 16 16 N 1.34471 * 126.16929 * 90.02030 * 15 14 13 17 17 C 1.30253 * 108.70604 * 180.02562 * 16 15 14 18 18 C 1.50697 * 125.62413 * 179.97438 * 17 16 15 19 19 O 1.33976 * 108.75583 * 359.97438 * 17 16 15 20 20 C 1.34328 * 126.16187 * 269.71084 * 15 14 13 21 21 C 1.50706 * 126.44427 * 359.97438 * 20 15 14 22 22 H 1.09001 * 109.47013 * 294.40766 * 1 2 3 23 23 H 1.09001 * 109.46554 * 174.40711 * 1 2 3 24 24 H 1.08995 * 109.46906 * 54.41039 * 1 2 3 25 25 H 1.09000 * 109.46948 * 119.99441 * 2 1 3 26 26 H 1.09000 * 109.47123 * 239.99967 * 2 1 3 27 27 H 0.96999 * 120.00063 * 179.97438 * 8 7 5 28 28 H 1.00903 * 110.99989 * 149.78147 * 13 3 2 29 29 H 1.09005 * 109.47061 * 295.09634 * 14 13 3 30 30 H 1.08997 * 109.47274 * 55.10149 * 14 13 3 31 31 H 1.09000 * 109.47086 * 90.00038 * 18 17 16 32 32 H 1.08994 * 109.47133 * 209.99846 * 18 17 16 33 33 H 1.09002 * 109.47189 * 330.00069 * 18 17 16 34 34 H 1.09000 * 109.47004 * 90.00017 * 21 20 15 35 35 H 1.08999 * 109.47090 * 209.99668 * 21 20 15 36 36 H 1.08993 * 109.47083 * 329.99788 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1293 1.4428 0.0372 5 6 1.4961 2.1676 1.2040 6 1 0.8791 3.0443 1.0731 7 6 1.7862 1.7118 2.4724 8 7 2.5379 0.6445 2.6317 9 14 1.1125 2.6110 3.9648 10 1 -0.3715 2.6112 3.9144 11 1 1.5662 1.9260 5.2018 12 1 1.6081 4.0109 3.9646 13 7 1.5917 2.1204 -1.2237 14 6 2.5298 1.8855 -2.3295 15 6 1.9783 2.4929 -3.5937 16 7 2.1920 3.7465 -4.0306 17 6 1.5554 3.9112 -5.1550 18 6 1.5341 5.1756 -5.9746 19 8 0.9225 2.7711 -5.4627 20 6 1.1894 1.8776 -4.4900 21 6 0.6932 0.4563 -4.4193 22 1 -0.3633 0.4247 0.9358 23 1 -0.3632 -1.0228 -0.1002 24 1 -0.3633 0.5981 -0.8357 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.7422 0.3240 3.5242 28 1 1.4620 3.1081 -1.0632 29 1 3.4902 2.3445 -2.0949 30 1 2.6642 0.8131 -2.4702 31 1 2.3578 5.1597 -6.6885 32 1 0.5886 5.2441 -6.5124 33 1 1.6408 6.0375 -5.3159 34 1 -0.2578 0.4296 -3.8874 35 1 0.5558 0.0688 -5.4288 36 1 1.4226 -0.1573 -3.8907 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:21 Heat of formation + Delta-G solvation = 8.466539 kcal Electronic energy + Delta-G solvation = -17132.960789 eV Core-core repulsion = 14425.418146 eV Total energy + Delta-G solvation = -2707.542643 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.06860 -36.50849 -34.64002 -33.41068 -32.01201 -30.49947 -30.01614 -27.21971 -25.33150 -23.74510 -23.05650 -21.36977 -20.27080 -18.97172 -16.67204 -16.59457 -15.99958 -14.97247 -14.49497 -14.05306 -13.80801 -13.57610 -13.32902 -13.25333 -12.74038 -12.62500 -12.49717 -12.13915 -11.98686 -11.66633 -11.28628 -10.92881 -10.88205 -10.66188 -10.37137 -10.23440 -10.04607 -9.72748 -9.36627 -8.78825 -8.45312 -8.22773 -7.22711 -5.99847 -4.04760 1.68685 2.86470 2.93042 3.33014 3.37280 3.40532 4.19285 4.43127 4.98282 5.12263 5.20553 5.29141 5.31502 5.44452 5.51636 5.62844 5.67659 5.85983 6.12359 6.16162 6.29977 6.39546 6.52090 6.62990 6.71814 6.86024 7.22646 7.30512 7.51014 7.75077 7.81672 7.85315 8.03005 8.27257 8.40415 8.67556 9.03627 9.59731 11.06256 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.005864 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.309083 B = 4774.092893 C = 5246.658529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.216 3.784 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.679 5.679 14 C 0.140 3.860 15 C 0.005 3.995 16 N -0.474 5.474 17 C 0.169 3.831 18 C -0.051 4.051 19 O -0.209 6.209 20 C -0.040 4.040 21 C -0.060 4.060 22 H 0.051 0.949 23 H 0.012 0.988 24 H 0.046 0.954 25 H 0.086 0.914 26 H 0.009 0.991 27 H 0.261 0.739 28 H 0.335 0.665 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 2.343 -14.721 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.108 3.892 4 H 0.019 0.981 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.311 5.311 14 C 0.010 3.990 15 C -0.115 4.115 16 N -0.205 5.205 17 C -0.037 4.037 18 C -0.108 4.108 19 O -0.097 6.097 20 C -0.093 4.093 21 C -0.117 4.117 22 H 0.070 0.930 23 H 0.031 0.969 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.152 0.848 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.313 2.166 -14.491 14.834 hybrid contribution 0.009 0.531 0.837 0.991 sum -2.305 2.698 -13.655 14.108 Atomic orbital electron populations 1.21441 0.97518 0.97049 1.01632 1.21430 0.95076 0.98143 0.99293 1.19142 0.93433 0.91613 0.84970 0.98064 1.21131 1.31658 1.11934 0.90317 0.92405 1.24860 0.95079 0.95016 0.98782 1.69870 1.37369 1.23138 1.22441 0.86637 0.79413 0.79785 0.82034 1.20242 1.21347 1.20393 1.60703 1.46693 1.16756 1.06944 1.20148 0.93857 0.98552 0.86481 1.21635 1.01021 0.89836 0.99026 1.70322 1.22198 1.18359 1.09596 1.26074 0.94226 0.88973 0.94470 1.20147 1.03872 0.88578 0.98207 1.84318 1.59100 1.21370 1.44922 1.23160 1.02767 0.94048 0.89297 1.20219 1.02831 0.85859 1.02747 0.92955 0.96860 0.93495 0.89606 0.97185 0.92927 0.84801 0.94615 0.90290 0.89448 0.89777 0.88366 0.89498 0.91252 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.46 37.16 0.35 -2.29 16 2 C -0.10 -2.40 5.58 -26.73 -0.15 -2.55 16 3 C 0.22 5.37 2.30 -68.86 -0.16 5.21 16 4 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 5 C -0.51 -13.84 7.33 -34.44 -0.25 -14.09 16 6 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 8 N -0.89 -25.09 11.34 55.43 0.63 -24.46 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.68 -14.77 5.50 -109.22 -0.60 -15.38 16 14 C 0.14 2.70 5.79 -4.98 -0.03 2.67 16 15 C 0.00 0.09 6.66 -82.81 -0.55 -0.46 16 16 N -0.47 -8.53 11.29 -7.36 -0.08 -8.61 16 17 C 0.17 2.52 8.34 -12.95 -0.11 2.41 16 18 C -0.05 -0.46 10.51 36.00 0.38 -0.08 16 19 O -0.21 -3.26 10.78 5.35 0.06 -3.20 16 20 C -0.04 -0.64 7.39 -35.69 -0.26 -0.90 16 21 C -0.06 -0.76 10.22 36.01 0.37 -0.39 16 22 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.05 1.01 7.50 -51.93 -0.39 0.62 16 25 H 0.09 2.27 6.13 -51.93 -0.32 1.96 16 26 H 0.01 0.21 7.44 -51.93 -0.39 -0.18 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.33 7.58 8.24 -39.29 -0.32 7.26 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.44 6.41 -51.93 -0.33 1.11 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.14 7.16 -51.93 -0.37 0.77 16 LS Contribution 299.63 15.07 4.52 4.52 Total: -1.00 -30.19 299.63 -6.42 -36.60 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.41 Total: 3.05 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.51 Total: -8.81 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.06 Total: -48.45 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.06 Total: -3.20 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.19 -6.42 -36.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.069 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds