Wall clock time and date at job start Sun Mar 29 2020 22:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46801 * 2 1 4 4 H 1.08996 * 109.46610 * 177.92516 * 3 2 1 5 5 C 1.50701 * 109.47171 * 57.92821 * 3 2 1 6 6 H 1.08001 * 119.99648 * 240.00120 * 5 3 2 7 7 C 1.37872 * 120.00011 * 59.99600 * 5 3 2 8 8 N 1.31507 * 120.00294 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99684 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47041 * 60.00415 * 9 7 5 11 11 H 1.48498 * 109.46767 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47187 * 300.00236 * 9 7 5 13 13 N 1.46900 * 109.47235 * 297.92445 * 3 2 1 14 14 C 1.46895 * 111.00006 * 273.74019 * 13 3 2 15 15 C 1.50706 * 109.47003 * 175.10362 * 14 13 3 16 16 N 1.34471 * 126.16929 * 90.02030 * 15 14 13 17 17 C 1.30253 * 108.70604 * 180.02562 * 16 15 14 18 18 C 1.50697 * 125.62413 * 179.97438 * 17 16 15 19 19 O 1.33976 * 108.75583 * 359.97438 * 17 16 15 20 20 C 1.34328 * 126.16187 * 269.71084 * 15 14 13 21 21 C 1.50706 * 126.44427 * 359.97438 * 20 15 14 22 22 H 1.09001 * 109.47013 * 294.40766 * 1 2 3 23 23 H 1.09001 * 109.46554 * 174.40711 * 1 2 3 24 24 H 1.08995 * 109.46906 * 54.41039 * 1 2 3 25 25 H 1.09000 * 109.46948 * 119.99441 * 2 1 3 26 26 H 1.09000 * 109.47123 * 239.99967 * 2 1 3 27 27 H 0.96999 * 120.00063 * 179.97438 * 8 7 5 28 28 H 1.00903 * 110.99989 * 149.78147 * 13 3 2 29 29 H 1.09005 * 109.47061 * 295.09634 * 14 13 3 30 30 H 1.08997 * 109.47274 * 55.10149 * 14 13 3 31 31 H 1.09000 * 109.47086 * 90.00038 * 18 17 16 32 32 H 1.08994 * 109.47133 * 209.99846 * 18 17 16 33 33 H 1.09002 * 109.47189 * 330.00069 * 18 17 16 34 34 H 1.09000 * 109.47004 * 90.00017 * 21 20 15 35 35 H 1.08999 * 109.47090 * 209.99668 * 21 20 15 36 36 H 1.08993 * 109.47083 * 329.99788 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1293 1.4428 0.0372 5 6 1.4961 2.1676 1.2040 6 1 0.8791 3.0443 1.0731 7 6 1.7862 1.7118 2.4724 8 7 2.5379 0.6445 2.6317 9 14 1.1125 2.6110 3.9648 10 1 -0.3715 2.6112 3.9144 11 1 1.5662 1.9260 5.2018 12 1 1.6081 4.0109 3.9646 13 7 1.5917 2.1204 -1.2237 14 6 2.5298 1.8855 -2.3295 15 6 1.9783 2.4929 -3.5937 16 7 2.1920 3.7465 -4.0306 17 6 1.5554 3.9112 -5.1550 18 6 1.5341 5.1756 -5.9746 19 8 0.9225 2.7711 -5.4627 20 6 1.1894 1.8776 -4.4900 21 6 0.6932 0.4563 -4.4193 22 1 -0.3633 0.4247 0.9358 23 1 -0.3632 -1.0228 -0.1002 24 1 -0.3633 0.5981 -0.8357 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.7422 0.3240 3.5242 28 1 1.4620 3.1081 -1.0632 29 1 3.4902 2.3445 -2.0949 30 1 2.6642 0.8131 -2.4702 31 1 2.3578 5.1597 -6.6885 32 1 0.5886 5.2441 -6.5124 33 1 1.6408 6.0375 -5.3159 34 1 -0.2578 0.4296 -3.8874 35 1 0.5558 0.0688 -5.4288 36 1 1.4226 -0.1573 -3.8907 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:20 Heat of formation + Delta-G solvation = -13.198666 kcal Electronic energy + Delta-G solvation = -17133.900263 eV Core-core repulsion = 14425.418146 eV Total energy + Delta-G solvation = -2708.482117 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.28449 -38.29758 -36.06732 -34.78243 -33.71765 -32.28362 -30.90496 -28.96260 -26.96136 -25.24832 -24.80804 -22.61361 -21.58324 -20.87100 -18.47488 -17.83937 -17.38192 -16.91606 -16.10432 -15.49048 -15.29933 -15.12919 -14.81258 -14.25197 -14.07915 -13.96996 -13.53012 -13.47443 -13.42366 -13.02488 -12.97036 -12.77962 -12.63096 -12.41111 -12.13165 -11.87855 -11.66434 -11.44721 -11.27022 -10.80377 -10.53393 -9.47345 -9.05889 -8.09393 -6.21205 0.50151 1.42543 1.43268 1.50740 1.64354 1.76588 2.43112 3.10504 3.19395 3.74889 3.83389 3.96001 4.27211 4.43955 4.54634 4.66137 4.66692 4.67968 4.73800 4.82918 4.86857 4.95271 4.98496 5.13099 5.24405 5.32188 5.38199 5.43769 5.58375 5.71499 5.83703 5.91844 6.28232 6.44363 6.72221 6.81621 6.97859 7.46953 8.95485 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.005864 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.309083 B = 4774.092893 C = 5246.658529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.095 4.095 3 C 0.221 3.779 4 H -0.035 1.035 5 C -0.526 4.526 6 H 0.052 0.948 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.953 3.047 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.669 5.669 14 C 0.148 3.852 15 C -0.028 4.028 16 N -0.516 5.516 17 C 0.178 3.822 18 C -0.050 4.050 19 O -0.210 6.210 20 C -0.034 4.034 21 C -0.060 4.060 22 H 0.026 0.974 23 H 0.039 0.961 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.327 0.673 29 H 0.017 0.983 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 2.599 -16.158 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C 0.113 3.887 4 H -0.017 1.017 5 C -0.565 4.565 6 H 0.070 0.930 7 C -0.179 4.179 8 N -0.553 5.553 9 Si 0.779 3.221 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.299 5.299 14 C 0.018 3.982 15 C -0.147 4.147 16 N -0.246 5.246 17 C -0.029 4.029 18 C -0.107 4.107 19 O -0.098 6.098 20 C -0.088 4.088 21 C -0.116 4.116 22 H 0.046 0.954 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.035 0.965 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.533 2.421 -15.935 16.501 hybrid contribution 0.420 0.494 1.184 1.350 sum -3.113 2.915 -14.751 15.355 Atomic orbital electron populations 1.21296 0.95980 0.98615 1.00482 1.21292 0.96307 0.96993 0.98819 1.18971 0.91146 0.92694 0.85872 1.01735 1.21370 1.31663 1.11982 0.91476 0.93012 1.25564 0.95305 0.95698 1.01313 1.69996 1.38165 1.24182 1.22939 0.85695 0.78907 0.78638 0.78883 1.19693 1.20875 1.20119 1.60672 1.47075 1.15877 1.06267 1.20019 0.92538 0.99117 0.86476 1.21432 1.03178 0.90766 0.99303 1.70282 1.24184 1.18686 1.11493 1.27209 0.92066 0.89900 0.93740 1.20488 1.06220 0.85845 0.98188 1.84358 1.59159 1.21602 1.44683 1.23635 1.01500 0.95125 0.88522 1.20367 1.02702 0.83920 1.04636 0.95432 0.94226 0.92835 0.92384 0.95264 0.92936 0.85671 0.96460 0.89349 0.87110 0.87213 0.87775 0.89238 0.88445 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.61 9.46 71.98 0.68 -3.93 16 2 C -0.10 -4.55 5.58 30.60 0.17 -4.38 16 3 C 0.22 11.27 2.30 44.17 0.10 11.37 16 4 H -0.03 -2.00 7.84 -2.39 -0.02 -2.02 16 5 C -0.53 -28.95 7.33 25.60 0.19 -28.76 16 6 H 0.05 2.85 7.60 -2.91 -0.02 2.83 16 7 C 0.02 1.14 5.30 84.65 0.45 1.59 16 8 N -0.91 -52.34 11.34 21.44 0.24 -52.10 16 9 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 N -0.67 -29.50 5.50 -499.46 -2.75 -32.25 16 14 C 0.15 5.82 5.79 85.56 0.50 6.32 16 15 C -0.03 -1.01 6.66 41.26 0.27 -0.74 16 16 N -0.52 -18.39 11.29 -291.98 -3.30 -21.68 16 17 C 0.18 4.99 8.34 88.34 0.74 5.73 16 18 C -0.05 -0.78 10.51 71.23 0.75 -0.03 16 19 O -0.21 -6.10 10.78 -3.77 -0.04 -6.14 16 20 C -0.03 -1.05 7.39 24.79 0.18 -0.87 16 21 C -0.06 -1.38 10.22 71.24 0.73 -0.65 16 22 H 0.03 1.30 7.37 -2.39 -0.02 1.28 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 2.22 7.50 -2.39 -0.02 2.20 16 25 H 0.06 3.11 6.13 -2.39 -0.01 3.10 16 26 H 0.03 1.24 7.44 -2.39 -0.02 1.23 16 27 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.33 15.18 8.24 -89.69 -0.74 14.44 16 29 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.09 3.23 6.41 -2.39 -0.02 3.22 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 2.14 7.16 -2.39 -0.02 2.12 16 Total: -1.00 -65.58 299.63 1.28 -64.31 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.33 Total: 16.28 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 4.76 Total: -14.35 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -5.80 Total: -106.03 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.04 Total: -6.14 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -65.58 1.28 -64.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.108 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds