Wall clock time and date at job start Sun Mar 29 2020 22:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48497 * 109.46678 * 269.99327 * 3 2 1 5 5 H 1.48498 * 109.47328 * 29.99361 * 3 2 1 6 6 H 1.48496 * 109.46877 * 149.99666 * 3 2 1 7 7 C 1.37871 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47256 * 180.02562 * 9 7 2 11 11 N 1.46492 * 109.47389 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00485 * 179.97438 * 11 10 9 13 13 O 1.21592 * 119.99719 * 5.19037 * 12 11 10 14 14 N 1.34773 * 120.00376 * 185.18606 * 12 11 10 15 15 C 1.45321 * 118.83017 * 175.22366 * 14 12 11 16 16 C 1.51706 * 112.00788 * 235.87239 * 15 14 12 17 17 C 1.51279 * 112.95303 * 318.23902 * 16 15 14 18 18 H 1.08993 * 114.33928 * 163.72160 * 17 16 15 19 19 C 1.52112 * 120.85249 * 308.62726 * 17 16 15 20 20 C 1.52214 * 120.66283 * 20.67688 * 17 16 15 21 21 H 1.08995 * 117.40219 * 142.27997 * 20 17 16 22 22 C 1.45538 * 118.82993 * 355.20592 * 14 12 11 23 23 H 0.97002 * 119.99809 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47456 * 59.99981 * 9 7 2 25 25 H 1.09002 * 109.47225 * 299.99611 * 9 7 2 26 26 H 1.08996 * 109.47099 * 59.99523 * 10 9 7 27 27 H 1.09002 * 109.46491 * 299.99821 * 10 9 7 28 28 H 0.97006 * 119.99691 * 359.97438 * 11 10 9 29 29 H 1.09000 * 108.96993 * 115.22070 * 15 14 12 30 30 H 1.08999 * 108.97508 * 356.52619 * 15 14 12 31 31 H 1.08997 * 108.78420 * 197.34706 * 16 15 14 32 32 H 1.08993 * 108.69267 * 79.06767 * 16 15 14 33 33 H 1.09001 * 117.54450 * 217.64932 * 19 17 16 34 34 H 1.08999 * 117.54702 * 2.84407 * 19 17 16 35 35 H 1.09000 * 109.21144 * 260.82932 * 22 14 12 36 36 H 1.08993 * 109.21610 * 20.20288 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9307 0.0012 12 6 2.1867 -6.0980 0.0016 13 8 3.3988 -6.1001 0.0978 14 7 1.5170 -7.2627 -0.1044 15 6 2.2736 -8.4992 -0.2071 16 6 1.9038 -9.2907 -1.4473 17 6 0.4149 -9.3072 -1.7144 18 1 0.1429 -9.6176 -2.7232 19 6 -0.5691 -9.7014 -0.6234 20 6 -0.4937 -8.2449 -1.1120 21 1 -1.3162 -7.8806 -1.7274 22 6 0.0619 -7.2375 -0.1117 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8726 -3.6047 -0.8878 28 1 0.5428 -4.9307 0.0005 29 1 2.0768 -9.1093 0.6745 30 1 3.3370 -8.2622 -0.2419 31 1 2.2498 -10.3170 -1.3248 32 1 2.4096 -8.8504 -2.3064 33 1 -1.4399 -10.2872 -0.9176 34 1 -0.1645 -9.9233 0.3641 35 1 -0.3061 -7.4831 0.8844 36 1 -0.2782 -6.2383 -0.3835 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595579249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:41 Heat of formation + Delta-G solvation = -29.066277 kcal Electronic energy + Delta-G solvation = -16872.837989 eV Core-core repulsion = 14163.667801 eV Total energy + Delta-G solvation = -2709.170188 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.73825 -39.52210 -36.71299 -35.51820 -34.84027 -32.83961 -31.17620 -27.75038 -26.80938 -25.18132 -22.99843 -22.42789 -21.75563 -19.83924 -18.71296 -18.49643 -17.36887 -16.84980 -16.66792 -16.41391 -15.67935 -15.44279 -15.18375 -14.98195 -14.39512 -14.26922 -13.79262 -13.31898 -13.21091 -12.94128 -12.71970 -12.51732 -12.33382 -12.22763 -11.92314 -11.66092 -11.48607 -11.21783 -10.86769 -10.72123 -10.60121 -10.16416 -9.47743 -8.23675 -6.34102 1.42489 1.43235 1.54508 1.66920 2.07909 2.41255 2.74174 3.06230 3.11219 3.70802 3.74178 3.90102 4.04060 4.17394 4.25846 4.44207 4.48427 4.50529 4.68524 4.80816 4.84091 4.86988 4.98287 5.08104 5.12377 5.20923 5.30040 5.30983 5.48936 5.58102 5.64454 5.78625 5.90426 6.16961 6.78561 6.94523 7.35249 7.51361 8.88384 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048058 B = 0.004493 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.492034 B = 6230.471867 C = 6632.765851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.159 3.841 11 N -0.734 5.734 12 C 0.694 3.306 13 O -0.637 6.637 14 N -0.618 5.618 15 C 0.122 3.878 16 C -0.098 4.098 17 C -0.137 4.137 18 H 0.111 0.889 19 C -0.158 4.158 20 C -0.180 4.180 21 H 0.124 0.876 22 C 0.135 3.865 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.008 0.992 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.405 0.595 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -19.856 -2.107 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.035 3.965 11 N -0.391 5.391 12 C 0.395 3.605 13 O -0.519 6.519 14 N -0.354 5.354 15 C -0.001 4.001 16 C -0.137 4.137 17 C -0.155 4.155 18 H 0.129 0.871 19 C -0.194 4.194 20 C -0.199 4.199 21 H 0.142 0.858 22 C 0.012 3.988 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.243 0.757 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.588 -19.757 -2.042 20.030 hybrid contribution -0.163 1.139 -0.038 1.151 sum -2.752 -18.618 -2.079 18.935 Atomic orbital electron populations 1.70060 1.07540 1.28012 1.50989 1.25859 0.95791 1.03049 0.94328 0.85435 0.78621 0.78395 0.78540 1.19726 1.20445 1.19095 1.21454 0.93606 0.91856 1.51625 0.92301 1.19121 0.94194 0.91646 0.96312 1.21102 0.94708 0.81150 0.99590 1.45468 1.10405 1.04553 1.78712 1.16207 0.84995 0.81478 0.77822 1.90830 1.13958 1.86914 1.60181 1.46517 1.06929 1.04940 1.77013 1.20861 0.96608 0.83621 0.98966 1.20733 0.94408 1.01296 0.97214 1.21572 0.92367 1.02290 0.99310 0.87130 1.23169 1.01370 0.95997 0.98910 1.22518 1.03430 0.91094 1.02837 0.85817 1.20906 0.78192 1.00056 0.99618 0.92518 0.97313 0.97337 0.93830 0.93847 0.75711 0.90777 0.90639 0.87925 0.92345 0.86938 0.88534 0.90231 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -31.01 9.11 25.60 0.23 -30.78 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.28 5.09 29.85 0.15 1.43 16 10 C 0.16 7.19 5.62 86.38 0.49 7.68 16 11 N -0.73 -27.78 5.41 -478.55 -2.59 -30.37 16 12 C 0.69 26.09 8.21 179.06 1.47 27.57 16 13 O -0.64 -28.93 15.55 -4.01 -0.06 -28.99 16 14 N -0.62 -17.27 3.01 -848.82 -2.56 -19.82 16 15 C 0.12 2.88 6.05 86.18 0.52 3.40 16 16 C -0.10 -1.74 6.09 29.61 0.18 -1.56 16 17 C -0.14 -2.15 5.92 -11.91 -0.07 -2.22 16 18 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 19 C -0.16 -2.05 9.77 30.57 0.30 -1.75 16 20 C -0.18 -3.04 6.35 -10.96 -0.07 -3.11 16 21 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 22 C 0.13 2.89 6.15 86.38 0.53 3.43 16 23 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.40 13.28 5.89 -92.70 -0.55 12.73 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 2.16 6.75 -2.39 -0.02 2.14 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.26 8.12 -2.39 -0.02 1.24 16 35 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 36 H 0.08 1.75 5.64 -2.39 -0.01 1.74 16 Total: -1.00 -68.50 293.91 1.82 -66.68 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.52 Total: 15.82 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 4.19 Total: 5.02 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -4.86 Total: -104.45 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.06 Total: -28.99 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.50 1.82 -66.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595579249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.615 kcal (2) G-P(sol) polarization free energy of solvation -68.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds