Wall clock time and date at job start Sun Mar 29 2020 21:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00384 * 2 1 4 4 H 1.48489 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46917 * 300.00080 * 3 2 1 6 6 H 1.48506 * 109.46706 * 59.99634 * 3 2 1 7 7 C 1.38818 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00208 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64540 * 0.03273 * 9 7 2 11 11 C 1.54332 * 107.26809 * 181.02825 * 10 9 7 12 12 C 1.55157 * 102.94104 * 22.19421 * 11 10 9 13 13 H 1.09002 * 111.00367 * 82.57305 * 12 11 10 14 14 C 1.53001 * 111.03508 * 206.41168 * 12 11 10 15 15 N 1.46500 * 109.46795 * 181.79835 * 14 12 11 16 16 C 1.46766 * 124.35150 * 90.00130 * 15 14 12 17 17 C 1.54479 * 105.47515 * 197.01821 * 16 15 14 18 18 C 1.54631 * 101.76113 * 334.57594 * 17 16 15 19 19 C 1.34419 * 124.35123 * 269.69759 * 15 14 12 20 20 O 1.21277 * 124.93841 * 359.57582 * 19 15 14 21 21 C 1.47418 * 125.64834 * 179.97438 * 9 7 2 22 22 H 0.97002 * 119.99710 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.88762 * 300.44654 * 10 9 7 24 24 H 1.09003 * 109.88200 * 61.45961 * 10 9 7 25 25 H 1.09000 * 110.72090 * 263.83388 * 11 10 9 26 26 H 1.08996 * 110.72335 * 140.56189 * 11 10 9 27 27 H 1.08999 * 109.47118 * 301.79352 * 14 12 11 28 28 H 1.08996 * 109.47145 * 61.79829 * 14 12 11 29 29 H 1.09005 * 110.24308 * 316.01285 * 16 15 14 30 30 H 1.09000 * 110.25048 * 78.00711 * 16 15 14 31 31 H 1.08994 * 110.97199 * 92.69972 * 17 16 15 32 32 H 1.09005 * 110.96647 * 216.42910 * 17 16 15 33 33 H 1.09002 * 110.47960 * 143.47789 * 18 17 16 34 34 H 1.08991 * 110.48864 * 265.98783 * 18 17 16 35 35 H 1.09003 * 110.36673 * 37.06419 * 21 9 7 36 36 H 1.08997 * 110.36612 * 274.74693 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5327 -0.0007 11 6 -0.4485 -4.0441 0.0263 12 6 0.8513 -4.6560 0.6123 13 1 0.8553 -4.5958 1.7006 14 6 1.0373 -6.1010 0.1450 15 7 2.2491 -6.6580 0.7512 16 6 2.2827 -7.3621 2.0385 17 6 3.7674 -7.3707 2.4650 18 6 4.4877 -7.2582 1.1013 19 6 3.4722 -6.5949 0.1972 20 8 3.7251 -6.0790 -0.8709 21 6 1.9334 -3.7312 0.0005 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5583 -2.0518 0.8823 24 1 -0.5538 -2.0822 -0.9018 25 1 -0.6308 -4.4183 -0.9811 26 1 -1.2991 -4.2513 0.6755 27 1 0.1743 -6.6944 0.4470 28 1 1.1312 -6.1225 -0.9407 29 1 1.6817 -6.8295 2.7756 30 1 1.9183 -8.3825 1.9200 31 1 3.9962 -6.5141 3.0989 32 1 4.0239 -8.3041 2.9662 33 1 5.3820 -6.6416 1.1921 34 1 4.7444 -8.2474 0.7226 35 1 2.8327 -3.7406 0.6164 36 1 2.1668 -4.0419 -1.0178 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595830640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:39 Heat of formation + Delta-G solvation = -10.801473 kcal Electronic energy + Delta-G solvation = -17503.934241 eV Core-core repulsion = 14795.556074 eV Total energy + Delta-G solvation = -2708.378167 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.26019 -37.38437 -36.18013 -33.52194 -31.83195 -29.49020 -27.98416 -27.52523 -25.46018 -23.65431 -21.95360 -20.00255 -19.77550 -19.06184 -16.90782 -16.48708 -16.38793 -15.39332 -14.57549 -14.39480 -13.89609 -13.67770 -13.49192 -13.16456 -12.79162 -12.56255 -12.10324 -11.82815 -11.71282 -11.55099 -11.24630 -11.08380 -10.80131 -10.74055 -10.21584 -10.04791 -9.90421 -9.76266 -9.57441 -9.48426 -8.52516 -8.47357 -6.70637 -5.61991 -2.93833 2.78006 3.16718 3.45530 3.50947 3.53890 4.36735 4.41663 4.58611 4.72001 4.99893 5.21377 5.26645 5.38478 5.47960 5.54439 5.59341 5.60011 5.70070 5.73467 5.88193 5.96356 6.06791 6.14906 6.48219 6.57284 6.63967 6.72125 6.89152 7.15142 7.31060 7.66499 7.71584 7.91445 8.36126 8.38446 9.33079 9.93576 10.60835 11.50335 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032887 B = 0.006379 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.183167 B = 4388.452688 C = 4819.028262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.137 4.137 12 C -0.121 4.121 13 H 0.072 0.928 14 C 0.138 3.862 15 N -0.618 5.618 16 C 0.102 3.898 17 C -0.132 4.132 18 C -0.156 4.156 19 C 0.513 3.487 20 O -0.523 6.523 21 C 0.150 3.850 22 H 0.250 0.750 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.028 0.972 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -17.423 5.863 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.335 5.335 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.141 4.141 13 H 0.091 0.909 14 C 0.016 3.984 15 N -0.352 5.352 16 C -0.021 4.021 17 C -0.170 4.170 18 C -0.196 4.196 19 C 0.300 3.700 20 O -0.398 6.398 21 C 0.024 3.976 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.046 0.954 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.928 -16.887 5.252 17.926 hybrid contribution 0.340 0.922 0.129 0.991 sum 3.268 -15.965 5.381 17.162 Atomic orbital electron populations 1.69981 1.04842 1.24686 1.57871 1.24788 0.95728 0.97571 1.02702 0.86046 0.78757 0.83878 0.77176 1.20544 1.21780 1.21847 1.19141 0.90473 0.82552 1.42768 0.90562 1.44533 1.01719 1.00126 1.87138 1.21112 0.84486 0.88136 1.00918 1.22869 0.95556 0.99709 0.99432 1.22765 0.98078 0.93184 1.00120 0.90929 1.21437 0.84868 0.93581 0.98477 1.48309 1.08551 1.56619 1.21746 1.22037 0.97634 0.96862 0.85590 1.22585 0.94028 1.03663 0.96732 1.22324 0.99065 1.02833 0.95404 1.20842 0.83977 0.79055 0.86152 1.90757 1.81792 1.45031 1.22254 1.21505 0.93506 0.85464 0.97077 0.93961 0.93770 0.94042 0.92406 0.92230 0.90757 0.90014 0.90373 0.91401 0.89901 0.89462 0.88206 0.88268 0.95366 0.95584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.40 10.31 55.49 0.57 -27.82 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 3 Si 0.91 23.18 29.55 -169.99 -5.02 18.15 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.22 -6.61 10.28 -15.06 -0.15 -6.77 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 9 N -0.61 -16.85 3.39 -170.06 -0.58 -17.43 16 10 C 0.18 4.57 5.38 -3.06 -0.02 4.55 16 11 C -0.14 -2.62 6.42 -24.89 -0.16 -2.78 16 12 C -0.12 -2.21 3.27 -88.46 -0.29 -2.50 16 13 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.14 2.02 5.43 -4.04 -0.02 2.00 16 15 N -0.62 -8.33 2.88 -172.41 -0.50 -8.83 16 16 C 0.10 0.93 7.35 -3.12 -0.02 0.91 16 17 C -0.13 -1.03 7.18 -25.10 -0.18 -1.21 16 18 C -0.16 -1.59 6.86 -26.74 -0.18 -1.77 16 19 C 0.51 7.85 7.54 -10.86 -0.08 7.77 16 20 O -0.52 -10.50 16.55 5.56 0.09 -10.41 16 21 C 0.15 3.51 5.65 -2.52 -0.01 3.50 16 22 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.04 1.23 7.38 -51.93 -0.38 0.85 16 24 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 25 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.32 7.81 -51.93 -0.41 0.91 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.66 7.43 -51.93 -0.39 0.27 16 LS Contribution 290.56 15.07 4.38 4.38 Total: -1.00 -35.16 290.56 -8.03 -43.19 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -5.75 Total: -4.46 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.22 Total: 3.22 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.50 Total: -54.08 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.16 -8.03 -43.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595830640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.393 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds