Wall clock time and date at job start Sun Mar 29 2020 21:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00384 * 2 1 4 4 H 1.48489 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46917 * 300.00080 * 3 2 1 6 6 H 1.48506 * 109.46706 * 59.99634 * 3 2 1 7 7 C 1.38818 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00208 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64540 * 0.03273 * 9 7 2 11 11 C 1.54332 * 107.26809 * 181.02825 * 10 9 7 12 12 C 1.55157 * 102.94104 * 22.19421 * 11 10 9 13 13 H 1.09002 * 111.00367 * 82.57305 * 12 11 10 14 14 C 1.53001 * 111.03508 * 206.41168 * 12 11 10 15 15 N 1.46500 * 109.46795 * 181.79835 * 14 12 11 16 16 C 1.46766 * 124.35150 * 90.00130 * 15 14 12 17 17 C 1.54479 * 105.47515 * 197.01821 * 16 15 14 18 18 C 1.54631 * 101.76113 * 334.57594 * 17 16 15 19 19 C 1.34419 * 124.35123 * 269.69759 * 15 14 12 20 20 O 1.21277 * 124.93841 * 359.57582 * 19 15 14 21 21 C 1.47418 * 125.64834 * 179.97438 * 9 7 2 22 22 H 0.97002 * 119.99710 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.88762 * 300.44654 * 10 9 7 24 24 H 1.09003 * 109.88200 * 61.45961 * 10 9 7 25 25 H 1.09000 * 110.72090 * 263.83388 * 11 10 9 26 26 H 1.08996 * 110.72335 * 140.56189 * 11 10 9 27 27 H 1.08999 * 109.47118 * 301.79352 * 14 12 11 28 28 H 1.08996 * 109.47145 * 61.79829 * 14 12 11 29 29 H 1.09005 * 110.24308 * 316.01285 * 16 15 14 30 30 H 1.09000 * 110.25048 * 78.00711 * 16 15 14 31 31 H 1.08994 * 110.97199 * 92.69972 * 17 16 15 32 32 H 1.09005 * 110.96647 * 216.42910 * 17 16 15 33 33 H 1.09002 * 110.47960 * 143.47789 * 18 17 16 34 34 H 1.08991 * 110.48864 * 265.98783 * 18 17 16 35 35 H 1.09003 * 110.36673 * 37.06419 * 21 9 7 36 36 H 1.08997 * 110.36612 * 274.74693 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5327 -0.0007 11 6 -0.4485 -4.0441 0.0263 12 6 0.8513 -4.6560 0.6123 13 1 0.8553 -4.5958 1.7006 14 6 1.0373 -6.1010 0.1450 15 7 2.2491 -6.6580 0.7512 16 6 2.2827 -7.3621 2.0385 17 6 3.7674 -7.3707 2.4650 18 6 4.4877 -7.2582 1.1013 19 6 3.4722 -6.5949 0.1972 20 8 3.7251 -6.0790 -0.8709 21 6 1.9334 -3.7312 0.0005 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5583 -2.0518 0.8823 24 1 -0.5538 -2.0822 -0.9018 25 1 -0.6308 -4.4183 -0.9811 26 1 -1.2991 -4.2513 0.6755 27 1 0.1743 -6.6944 0.4470 28 1 1.1312 -6.1225 -0.9407 29 1 1.6817 -6.8295 2.7756 30 1 1.9183 -8.3825 1.9200 31 1 3.9962 -6.5141 3.0989 32 1 4.0239 -8.3041 2.9662 33 1 5.3820 -6.6416 1.1921 34 1 4.7444 -8.2474 0.7226 35 1 2.8327 -3.7406 0.6164 36 1 2.1668 -4.0419 -1.0178 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595830640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:39 Heat of formation + Delta-G solvation = -34.933111 kcal Electronic energy + Delta-G solvation = -17504.980667 eV Core-core repulsion = 14795.556074 eV Total energy + Delta-G solvation = -2709.424593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33522 -39.16390 -37.34249 -35.20460 -33.42708 -31.34624 -29.64007 -28.37291 -27.32518 -25.38973 -22.77645 -21.96432 -21.31744 -20.23483 -18.94941 -17.73902 -17.36179 -16.85470 -16.46204 -15.98832 -15.56653 -14.72427 -14.65194 -14.57440 -14.04709 -13.93487 -13.82744 -13.38003 -13.31988 -12.94845 -12.78413 -12.58461 -12.22461 -12.02161 -11.91028 -11.89467 -11.79101 -11.61291 -11.42968 -10.76576 -10.72011 -9.59215 -8.94969 -7.90611 -5.26518 1.39991 1.42329 1.53090 1.64656 2.17613 2.45060 3.26434 3.50895 3.63155 3.70126 3.85497 4.00916 4.06625 4.12575 4.30615 4.48503 4.51881 4.64087 4.70795 4.78375 4.81831 4.86539 4.93035 5.05175 5.06005 5.12878 5.28637 5.36665 5.39921 5.62735 5.69073 5.75215 6.15703 6.27174 7.06253 7.26062 7.72624 8.37750 9.20042 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032887 B = 0.006379 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.183167 B = 4388.452688 C = 4819.028262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.982 3.018 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.632 5.632 10 C 0.182 3.818 11 C -0.120 4.120 12 C -0.101 4.101 13 H 0.080 0.920 14 C 0.144 3.856 15 N -0.620 5.620 16 C 0.095 3.905 17 C -0.121 4.121 18 C -0.150 4.150 19 C 0.492 3.508 20 O -0.587 6.587 21 C 0.154 3.846 22 H 0.249 0.751 23 H 0.015 0.985 24 H 0.003 0.997 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.012 0.988 36 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 -19.513 7.645 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.358 5.358 10 C 0.057 3.943 11 C -0.159 4.159 12 C -0.122 4.122 13 H 0.099 0.901 14 C 0.021 3.979 15 N -0.353 5.353 16 C -0.026 4.026 17 C -0.159 4.159 18 C -0.190 4.190 19 C 0.282 3.718 20 O -0.468 6.468 21 C 0.029 3.971 22 H 0.058 0.942 23 H 0.033 0.967 24 H 0.021 0.979 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.138 0.862 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.144 0.856 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.031 0.969 36 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 2.842 -19.028 7.081 20.501 hybrid contribution 0.374 1.578 -0.434 1.679 sum 3.216 -17.450 6.647 18.948 Atomic orbital electron populations 1.70198 1.06213 1.25378 1.58093 1.25686 0.96771 1.01010 1.02266 0.84971 0.77886 0.79066 0.77173 1.19500 1.21457 1.21028 1.19452 0.90680 0.84204 1.43542 0.91172 1.44899 1.02897 1.01058 1.86977 1.20957 0.83236 0.92459 0.97646 1.22740 0.97205 0.94595 1.01358 1.22654 0.94991 0.94448 1.00080 0.90121 1.21317 0.87217 0.91736 0.97587 1.48512 1.07628 1.55957 1.23154 1.22413 0.98794 0.98033 0.83390 1.22645 0.92615 1.05470 0.95165 1.22363 0.97587 1.03296 0.95730 1.21856 0.85609 0.78441 0.85925 1.90716 1.82956 1.47913 1.25197 1.21512 0.94676 0.84996 0.95935 0.94163 0.96713 0.97862 0.91074 0.88564 0.86157 0.91998 0.89484 0.88267 0.90490 0.85632 0.88571 0.85817 0.96920 0.97881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.01 10.31 21.65 0.22 -59.79 16 2 C -0.06 -3.92 5.49 84.86 0.47 -3.46 16 3 Si 0.98 48.55 29.55 68.60 2.03 50.58 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.25 -15.51 10.28 84.03 0.86 -14.65 16 8 H 0.07 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -36.31 3.39 -691.96 -2.35 -38.65 16 10 C 0.18 9.60 5.38 86.73 0.47 10.06 16 11 C -0.12 -4.46 6.42 31.79 0.20 -4.25 16 12 C -0.10 -3.58 3.27 -9.39 -0.03 -3.61 16 13 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 14 C 0.14 3.88 5.43 86.38 0.47 4.35 16 15 N -0.62 -15.36 2.88 -817.98 -2.36 -17.71 16 16 C 0.10 1.33 7.35 86.83 0.64 1.97 16 17 C -0.12 -1.42 7.18 31.65 0.23 -1.19 16 18 C -0.15 -2.73 6.86 30.59 0.21 -2.52 16 19 C 0.49 14.83 7.54 87.90 0.66 15.50 16 20 O -0.59 -24.58 16.55 -3.02 -0.05 -24.63 16 21 C 0.15 7.43 5.65 86.86 0.49 7.92 16 22 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 23 H 0.01 0.85 7.38 -2.39 -0.02 0.83 16 24 H 0.00 0.19 7.50 -2.39 -0.02 0.17 16 25 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 26 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 1.95 7.81 -2.39 -0.02 1.93 16 29 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.13 0.58 8.14 -2.38 -0.02 0.57 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.00 0.18 7.43 -2.39 -0.02 0.16 16 Total: -1.00 -82.21 290.56 3.20 -79.01 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: 1.04 Total: 1.08 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 4.67 Total: 10.11 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -4.48 Total: -116.15 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -82.21 3.20 -79.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595830640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.075 kcal (2) G-P(sol) polarization free energy of solvation -82.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds