Wall clock time and date at job start Sun Mar 29 2020 22:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.47242 * 121.71420 * 359.71458 * 13 11 10 15 15 C 1.52574 * 109.67923 * 132.13963 * 14 13 11 16 16 N 1.47453 * 109.87628 * 48.11458 * 15 14 13 17 17 C 1.48073 * 109.71306 * 49.18589 * 16 15 14 18 18 C 1.54093 * 106.83181 * 269.95271 * 17 16 15 19 19 C 1.48377 * 121.71981 * 179.97438 * 13 11 10 20 20 H 1.09000 * 114.03291 * 5.19719 * 19 13 11 21 21 C 1.50210 * 108.34606 * 294.48242 * 16 15 14 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.08999 * 109.47901 * 251.44360 * 14 13 11 28 28 H 1.09000 * 109.48463 * 11.48398 * 14 13 11 29 29 H 1.09003 * 109.22042 * 288.08760 * 15 14 13 30 30 H 1.08996 * 109.47410 * 168.30198 * 15 14 13 31 31 H 1.09000 * 109.98874 * 150.60679 * 17 16 15 32 32 H 1.09008 * 110.02352 * 29.31212 * 17 16 15 33 33 H 1.09003 * 110.42093 * 241.92016 * 18 17 16 34 34 H 1.08994 * 110.52217 * 119.50147 * 18 17 16 35 35 H 1.09001 * 111.64433 * 316.78269 * 21 16 15 36 36 H 1.09000 * 110.91061 * 192.56040 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2791 -4.9672 0.0030 13 7 2.1657 -6.1344 0.0024 14 6 3.6375 -6.1785 -0.0039 15 6 4.1268 -7.1542 1.0621 16 7 3.3851 -8.4243 0.9575 17 6 3.3834 -8.8874 -0.4490 18 6 2.1352 -8.2795 -1.1174 19 6 1.4627 -7.4411 0.0035 20 1 0.3793 -7.3623 -0.0863 21 6 1.9454 -8.1603 1.2949 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5564 0.8919 25 1 2.8714 -3.6047 -0.8890 26 1 2.8726 -3.6039 0.8910 27 1 3.9867 -6.5190 -0.9786 28 1 4.0319 -5.1822 0.1961 29 1 3.9639 -6.7196 2.0483 30 1 5.1909 -7.3433 0.9206 31 1 3.3316 -9.9757 -0.4829 32 1 4.2838 -8.5415 -0.9569 33 1 1.4638 -9.0680 -1.4574 34 1 2.4220 -7.6393 -1.9516 35 1 1.8490 -7.5088 2.1635 36 1 1.4040 -9.0939 1.4473 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597708031.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:14 Heat of formation + Delta-G solvation = -22.192985 kcal Electronic energy + Delta-G solvation = -17420.295458 eV Core-core repulsion = 14711.423318 eV Total energy + Delta-G solvation = -2708.872140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.97173 -38.27006 -33.86091 -33.48210 -32.28566 -30.85676 -29.24669 -27.22929 -25.48927 -23.63160 -22.14898 -20.90412 -20.31842 -18.47570 -17.20030 -16.35682 -15.99815 -15.21027 -15.06945 -14.77530 -14.47832 -14.25884 -13.56302 -13.05708 -13.01861 -12.65985 -12.21288 -12.18316 -11.65404 -11.47903 -11.42871 -11.16999 -11.00827 -10.98615 -10.95859 -10.57904 -9.98785 -9.66924 -9.31038 -9.16477 -8.95900 -8.34501 -8.14210 -5.97445 -4.02011 3.10625 3.16832 3.31530 3.38714 3.41922 3.80631 4.44540 4.48505 4.65171 4.72004 4.90366 4.97060 5.08216 5.16406 5.28538 5.37599 5.40435 5.58361 5.62664 5.66808 5.75378 5.78934 5.83926 5.89157 6.17462 6.18413 6.52116 6.61831 6.71404 6.87864 7.71946 7.73103 7.84054 8.05375 8.36622 8.70284 9.06461 9.61706 11.13582 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049497 B = 0.005186 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.551324 B = 5397.421445 C = 5689.819245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.127 4.127 11 C 0.516 3.484 12 O -0.533 6.533 13 N -0.626 5.626 14 C 0.076 3.924 15 C 0.022 3.978 16 N -0.501 5.501 17 C 0.029 3.971 18 C -0.161 4.161 19 C 0.107 3.893 20 H 0.120 0.880 21 C 0.020 3.980 22 H 0.260 0.740 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.699 -17.512 -0.124 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.167 4.167 11 C 0.306 3.694 12 O -0.408 6.408 13 N -0.363 5.363 14 C -0.049 4.049 15 C -0.108 4.108 16 N -0.223 5.223 17 C -0.099 4.099 18 C -0.201 4.201 19 C 0.002 3.998 20 H 0.138 0.862 21 C -0.109 4.109 22 H 0.070 0.930 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.164 -17.768 0.262 19.555 hybrid contribution 0.177 1.572 -0.650 1.711 sum 8.342 -16.195 -0.388 18.221 Atomic orbital electron populations 1.70007 1.06074 1.26494 1.50248 1.25026 0.94816 0.99242 0.95276 0.86536 0.79996 0.83826 0.77610 1.19747 1.20998 1.20988 1.21244 0.92922 0.90973 1.51331 0.92589 1.18913 0.93174 0.89406 0.98593 1.21879 1.00712 0.91941 1.02169 1.21572 0.88393 0.85269 0.74124 1.90659 1.14349 1.87112 1.48694 1.48944 1.06089 1.05600 1.75679 1.22187 0.80797 1.02189 0.99680 1.22768 0.98906 0.89435 0.99691 1.66361 1.10365 1.25315 1.20218 1.23045 0.97692 1.00715 0.88492 1.23276 0.98188 0.99780 0.98830 1.23348 0.98878 0.82836 0.94730 0.86177 1.24120 0.88979 1.00260 0.97554 0.92985 0.95873 0.95837 0.90410 0.90337 0.91765 0.88602 0.90059 0.89349 0.90068 0.90972 0.90395 0.90556 0.89589 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.63 4.05 -27.88 -0.11 -2.74 16 11 C 0.52 10.26 7.74 -10.98 -0.09 10.17 16 12 O -0.53 -12.81 15.68 5.56 0.09 -12.73 16 13 N -0.63 -9.39 2.70 -161.51 -0.44 -9.83 16 14 C 0.08 0.88 5.66 -3.85 -0.02 0.86 16 15 C 0.02 0.22 5.89 -3.74 -0.02 0.20 16 16 N -0.50 -5.30 5.99 -228.17 -1.37 -6.67 16 17 C 0.03 0.27 6.22 -2.61 -0.02 0.25 16 18 C -0.16 -1.66 5.96 -24.95 -0.15 -1.80 16 19 C 0.11 1.39 4.41 -64.35 -0.28 1.10 16 20 H 0.12 1.75 7.45 -51.93 -0.39 1.36 16 21 C 0.02 0.22 6.62 -0.64 0.00 0.22 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 26 H 0.08 1.49 7.67 -51.93 -0.40 1.09 16 27 H 0.06 0.67 6.22 -51.93 -0.32 0.35 16 28 H 0.10 1.11 6.18 -51.93 -0.32 0.79 16 29 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.60 7.02 -51.92 -0.36 0.24 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.85 7.51 -51.93 -0.39 0.46 16 35 H 0.09 1.07 7.88 -51.93 -0.41 0.66 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 284.65 15.07 4.29 4.29 Total: -1.00 -33.53 284.65 -8.43 -41.97 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.50 Total: -2.29 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.22 Total: -4.59 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -1.07 Total: -43.32 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.53 -8.43 -41.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597708031.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.773 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds