Wall clock time and date at job start Sun Mar 29 2020 22:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.47242 * 121.71420 * 359.71458 * 13 11 10 15 15 C 1.52574 * 109.67923 * 132.13963 * 14 13 11 16 16 N 1.47453 * 109.87628 * 48.11458 * 15 14 13 17 17 C 1.48073 * 109.71306 * 49.18589 * 16 15 14 18 18 C 1.54093 * 106.83181 * 269.95271 * 17 16 15 19 19 C 1.48377 * 121.71981 * 179.97438 * 13 11 10 20 20 H 1.09000 * 114.03291 * 5.19719 * 19 13 11 21 21 C 1.50210 * 108.34606 * 294.48242 * 16 15 14 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.08999 * 109.47901 * 251.44360 * 14 13 11 28 28 H 1.09000 * 109.48463 * 11.48398 * 14 13 11 29 29 H 1.09003 * 109.22042 * 288.08760 * 15 14 13 30 30 H 1.08996 * 109.47410 * 168.30198 * 15 14 13 31 31 H 1.09000 * 109.98874 * 150.60679 * 17 16 15 32 32 H 1.09008 * 110.02352 * 29.31212 * 17 16 15 33 33 H 1.09003 * 110.42093 * 241.92016 * 18 17 16 34 34 H 1.08994 * 110.52217 * 119.50147 * 18 17 16 35 35 H 1.09001 * 111.64433 * 316.78269 * 21 16 15 36 36 H 1.09000 * 110.91061 * 192.56040 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2791 -4.9672 0.0030 13 7 2.1657 -6.1344 0.0024 14 6 3.6375 -6.1785 -0.0039 15 6 4.1268 -7.1542 1.0621 16 7 3.3851 -8.4243 0.9575 17 6 3.3834 -8.8874 -0.4490 18 6 2.1352 -8.2795 -1.1174 19 6 1.4627 -7.4411 0.0035 20 1 0.3793 -7.3623 -0.0863 21 6 1.9454 -8.1603 1.2949 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5564 0.8919 25 1 2.8714 -3.6047 -0.8890 26 1 2.8726 -3.6039 0.8910 27 1 3.9867 -6.5190 -0.9786 28 1 4.0319 -5.1822 0.1961 29 1 3.9639 -6.7196 2.0483 30 1 5.1909 -7.3433 0.9206 31 1 3.3316 -9.9757 -0.4829 32 1 4.2838 -8.5415 -0.9569 33 1 1.4638 -9.0680 -1.4574 34 1 2.4220 -7.6393 -1.9516 35 1 1.8490 -7.5088 2.1635 36 1 1.4040 -9.0939 1.4473 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597708031.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:14 Heat of formation + Delta-G solvation = -47.011206 kcal Electronic energy + Delta-G solvation = -17421.371657 eV Core-core repulsion = 14711.423318 eV Total energy + Delta-G solvation = -2709.948338 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03363 -39.73711 -35.64168 -35.06437 -33.36417 -32.69846 -30.11072 -28.58624 -27.22935 -24.60714 -23.92097 -21.81777 -21.62011 -19.75123 -18.92051 -17.89807 -17.26653 -16.59461 -16.50373 -16.31760 -15.71820 -15.42359 -14.83262 -14.50078 -14.23990 -13.95156 -13.78014 -13.54938 -13.21147 -12.87137 -12.65018 -12.47993 -12.34953 -12.28909 -11.99522 -11.90763 -11.78119 -11.62177 -11.31301 -10.75943 -10.60382 -10.26554 -9.19898 -8.20226 -6.34853 1.41142 1.42804 1.56092 1.61212 1.88860 2.41435 2.96811 3.12915 3.53313 3.72842 3.83039 3.90096 4.04547 4.08486 4.22957 4.38966 4.41252 4.46446 4.57135 4.67270 4.70724 4.81609 4.87025 4.95450 4.97903 5.03305 5.10486 5.44301 5.53666 5.57359 5.68759 5.81462 5.92452 6.14120 6.35133 6.83372 7.18987 7.35830 8.92883 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049497 B = 0.005186 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.551324 B = 5397.421445 C = 5689.819245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.976 3.024 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.043 3.957 10 C -0.114 4.114 11 C 0.512 3.488 12 O -0.591 6.591 13 N -0.614 5.614 14 C 0.068 3.932 15 C 0.025 3.975 16 N -0.502 5.502 17 C 0.033 3.967 18 C -0.152 4.152 19 C 0.092 3.908 20 H 0.095 0.905 21 C 0.027 3.973 22 H 0.263 0.737 23 H -0.020 1.020 24 H -0.019 1.019 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.991 -18.457 -0.357 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.799 3.201 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.005 3.995 10 C -0.153 4.153 11 C 0.303 3.697 12 O -0.471 6.471 13 N -0.349 5.349 14 C -0.055 4.055 15 C -0.105 4.105 16 N -0.223 5.223 17 C -0.095 4.095 18 C -0.191 4.191 19 C -0.012 4.012 20 H 0.113 0.887 21 C -0.102 4.102 22 H 0.072 0.928 23 H -0.001 1.001 24 H -0.001 1.001 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.528 -18.773 0.029 22.030 hybrid contribution -0.859 1.774 -0.581 2.055 sum 10.668 -17.000 -0.552 20.077 Atomic orbital electron populations 1.70187 1.08401 1.27813 1.51465 1.26157 0.95714 1.04024 0.94525 0.85248 0.79319 0.77927 0.77590 1.17489 1.20581 1.20587 1.21715 0.93970 0.91463 1.50830 0.90548 1.18691 0.93658 0.92570 0.94538 1.21618 0.99263 0.90179 1.04256 1.21372 0.87625 0.86541 0.74207 1.90635 1.16610 1.88008 1.51845 1.48914 1.07855 1.04879 1.73235 1.22527 0.78125 1.03238 1.01583 1.22831 1.00305 0.88705 0.98612 1.66397 1.09329 1.25322 1.21298 1.23121 0.97405 1.01634 0.87330 1.23230 0.98946 0.99501 0.97452 1.23571 0.97922 0.82225 0.97528 0.88669 1.24068 0.89941 1.00428 0.95798 0.92814 1.00143 1.00106 0.88161 0.88071 0.89680 0.88289 0.90822 0.86455 0.88379 0.89412 0.88795 0.91255 0.91155 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.17 13.29 21.45 0.28 -59.89 16 2 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 3 Si 0.98 44.44 29.54 68.60 2.03 46.46 16 4 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 9 C 0.04 2.46 4.26 29.85 0.13 2.58 16 10 C -0.11 -4.72 4.05 29.85 0.12 -4.60 16 11 C 0.51 20.95 7.74 87.66 0.68 21.63 16 12 O -0.59 -30.30 15.68 -3.02 -0.05 -30.35 16 13 N -0.61 -18.08 2.70 -783.27 -2.11 -20.19 16 14 C 0.07 1.40 5.66 86.10 0.49 1.89 16 15 C 0.02 0.42 5.89 86.06 0.51 0.93 16 16 N -0.50 -9.03 5.99 -875.79 -5.25 -14.28 16 17 C 0.03 0.48 6.22 86.45 0.54 1.01 16 18 C -0.15 -2.77 5.96 31.75 0.19 -2.58 16 19 C 0.09 2.34 4.41 46.28 0.20 2.54 16 20 H 0.10 2.91 7.45 -2.39 -0.02 2.89 16 21 C 0.03 0.56 6.62 86.52 0.57 1.13 16 22 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 23 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 24 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 25 H 0.10 3.70 8.06 -2.39 -0.02 3.68 16 26 H 0.10 3.72 7.67 -2.39 -0.02 3.70 16 27 H 0.09 1.46 6.22 -2.39 -0.01 1.44 16 28 H 0.10 1.99 6.18 -2.39 -0.01 1.98 16 29 H 0.07 1.39 7.93 -2.39 -0.02 1.37 16 30 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.04 7.02 -2.38 -0.02 1.02 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.38 7.51 -2.39 -0.02 1.37 16 35 H 0.07 1.71 7.88 -2.39 -0.02 1.69 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -76.76 284.65 0.08 -76.69 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.05 Total: 7.88 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 4.12 Total: -6.33 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -7.08 Total: -94.35 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.05 Total: -30.35 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -76.76 0.08 -76.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597708031.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.676 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds