Wall clock time and date at job start Sun Mar 29 2020 22:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46992 * 2 1 4 4 H 1.09003 * 109.46958 * 54.99842 * 3 2 1 5 5 C 1.52994 * 109.47384 * 295.00316 * 3 2 1 6 6 C 1.53001 * 109.47044 * 174.99751 * 3 2 1 7 7 C 1.50706 * 109.46848 * 185.00074 * 6 3 2 8 8 N 1.29946 * 126.28426 * 270.02363 * 7 6 3 9 9 O 1.21309 * 110.24521 * 179.68915 * 8 7 6 10 10 C 1.33639 * 109.80928 * 0.46841 * 9 8 7 11 11 C 1.50706 * 126.55037 * 179.79972 * 10 9 8 12 12 C 1.52997 * 109.47238 * 269.69219 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99907 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99654 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47022 * 89.99986 * 17 15 13 19 19 H 1.48502 * 109.46769 * 209.99494 * 17 15 13 20 20 H 1.48495 * 109.47280 * 329.99669 * 17 15 13 21 21 N 1.31128 * 106.90120 * 359.54177 * 10 9 8 22 22 H 1.09004 * 109.47447 * 299.99910 * 1 2 3 23 23 H 1.09002 * 109.47589 * 60.00118 * 1 2 3 24 24 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47032 * 240.00001 * 2 1 3 26 26 H 1.09000 * 109.46986 * 120.00322 * 2 1 3 27 27 H 1.09000 * 109.47336 * 59.99477 * 5 3 2 28 28 H 1.09004 * 109.47365 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47201 * 299.99622 * 5 3 2 30 30 H 1.08996 * 109.46965 * 65.00269 * 6 3 2 31 31 H 1.08999 * 109.47236 * 305.00467 * 6 3 2 32 32 H 1.09001 * 109.46953 * 29.68831 * 11 10 9 33 33 H 1.09000 * 109.47318 * 149.68429 * 11 10 9 34 34 H 1.09001 * 109.46832 * 299.99686 * 12 11 10 35 35 H 1.09004 * 109.47261 * 59.99705 * 12 11 10 36 36 H 0.96999 * 119.99682 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1266 -1.3072 6 6 3.5648 1.4444 0.1258 7 6 4.0569 2.8634 0.2493 8 7 4.3935 3.6486 -0.7298 9 8 4.7410 4.7290 -0.3012 10 6 4.6661 4.7321 1.0331 11 6 5.0129 5.8778 1.9488 12 6 6.4887 5.7876 2.3422 13 6 6.8355 6.9335 3.2573 14 1 6.0790 7.6539 3.5312 15 6 8.1186 7.0618 3.7457 16 7 8.4212 8.0616 4.5447 17 14 9.4270 5.8154 3.2724 18 1 10.1177 6.2673 2.0380 19 1 10.4142 5.6914 4.3748 20 1 8.7892 4.4967 3.0284 21 7 4.2280 3.5498 1.3932 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.5488 2.1252 -1.3968 28 1 1.9989 3.1542 -1.3074 29 1 2.0698 1.5876 -2.1491 30 1 4.0029 0.9837 -0.7596 31 1 3.8570 0.8800 1.0113 32 1 4.8310 6.8216 1.4347 33 1 4.3942 5.8270 2.8447 34 1 6.6705 4.8437 2.8563 35 1 7.1074 5.8384 1.4462 36 1 9.3239 8.1520 4.8880 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601399594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:08 Heat of formation + Delta-G solvation = 31.366387 kcal Electronic energy + Delta-G solvation = -16544.529430 eV Core-core repulsion = 13837.979799 eV Total energy + Delta-G solvation = -2706.549631 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.20320 -37.61288 -35.47786 -34.46905 -32.59609 -31.06356 -30.07668 -27.80417 -26.21287 -24.56077 -23.04099 -21.64934 -20.44462 -20.10405 -17.69971 -17.20917 -16.65361 -15.55320 -14.89688 -14.59384 -14.39439 -14.10646 -13.53592 -13.49489 -12.82092 -12.72236 -12.33900 -12.30470 -11.99344 -11.87766 -11.59888 -11.44884 -11.09434 -10.92606 -10.84334 -10.81627 -10.65223 -10.39300 -10.19906 -9.89691 -9.37330 -9.34779 -8.63129 -6.13842 -4.14351 1.51803 2.55303 3.26742 3.27450 3.34815 3.38687 3.86844 4.30149 4.37940 4.63468 4.68269 4.72981 5.07592 5.20086 5.25020 5.30917 5.39237 5.44544 5.51929 5.69237 5.73703 5.78198 5.83553 5.87051 5.95361 6.01919 6.09606 6.15853 6.20694 6.34500 6.46296 7.02010 7.15606 7.61349 8.38205 8.52420 8.88315 9.46894 10.98800 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046543 B = 0.004387 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.444354 B = 6380.297940 C = 6451.677720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.087 4.087 4 H 0.076 0.924 5 C -0.149 4.149 6 C -0.023 4.023 7 C 0.168 3.832 8 N -0.397 5.397 9 O 0.066 5.934 10 C 0.207 3.793 11 C -0.019 4.019 12 C -0.007 4.007 13 C -0.525 4.525 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.266 1.266 21 N -0.494 5.494 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.026 0.974 35 H 0.019 0.981 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.626 -13.744 -9.668 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.107 4.107 4 H 0.095 0.905 5 C -0.206 4.206 6 C -0.062 4.062 7 C -0.105 4.105 8 N -0.108 5.108 9 O 0.011 5.989 10 C -0.012 4.012 11 C -0.058 4.058 12 C -0.046 4.046 13 C -0.563 4.563 14 H 0.096 0.904 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.704 3.296 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.191 1.191 21 N -0.228 5.228 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.044 0.956 35 H 0.037 0.963 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.634 -14.209 -10.117 21.538 hybrid contribution 0.940 -0.397 -0.103 1.025 sum -11.694 -14.606 -10.220 21.320 Atomic orbital electron populations 1.21814 0.95678 1.01521 1.02065 1.21543 0.96128 0.95560 1.02233 1.21140 0.93338 0.96916 0.99275 0.90522 1.21906 1.01137 1.00861 0.96716 1.20019 0.95708 0.86355 1.04081 1.25723 1.00362 1.00154 0.84268 1.74568 1.19027 0.93500 1.23681 1.85275 1.62018 1.28174 1.23480 1.29630 0.92149 0.96562 0.82842 1.20523 1.01455 0.89407 0.94441 1.19616 0.88824 0.98932 0.97207 1.20935 0.97110 1.09973 1.28306 0.90363 1.24949 0.98399 0.95234 0.94393 1.69890 1.20424 1.30384 1.32810 0.86824 0.81796 0.82576 0.78439 1.20077 1.21113 1.19059 1.71932 1.20191 1.03411 1.27286 0.92641 0.92485 0.92784 0.91797 0.91627 0.92365 0.92704 0.92522 0.89454 0.88823 0.88552 0.87671 0.95588 0.96300 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.12 -0.95 5.40 -26.73 -0.14 -1.09 16 3 C -0.09 -0.90 2.38 -90.62 -0.22 -1.12 16 4 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 5 C -0.15 -1.56 8.76 37.15 0.33 -1.24 16 6 C -0.02 -0.27 5.32 -27.88 -0.15 -0.42 16 7 C 0.17 2.73 6.68 -156.37 -1.05 1.68 16 8 N -0.40 -6.86 11.46 30.90 0.35 -6.51 16 9 O 0.07 1.19 11.31 18.11 0.20 1.39 16 10 C 0.21 3.78 7.77 -13.05 -0.10 3.68 16 11 C -0.02 -0.35 5.78 -27.88 -0.16 -0.52 16 12 C -0.01 -0.17 4.02 -27.89 -0.11 -0.28 16 13 C -0.53 -14.21 9.66 -34.44 -0.33 -14.54 16 14 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 17 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 21 N -0.49 -9.03 11.55 -9.87 -0.11 -9.14 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 28 H 0.05 0.70 6.84 -51.93 -0.36 0.34 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 34 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 35 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 299.86 15.07 4.52 4.52 Total: -1.00 -29.97 299.86 -6.22 -36.19 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -5.62 Total: -4.41 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.67 Total: -12.66 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 1.01 Total: -41.70 kcal Atomic # 8 Polarization: 1.19 SS G_CDS: 0.20 Total: 1.39 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.97 -6.22 -36.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601399594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.560 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds