Wall clock time and date at job start Sun Mar 29 2020 22:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46992 * 2 1 4 4 H 1.09003 * 109.46958 * 54.99842 * 3 2 1 5 5 C 1.52994 * 109.47384 * 295.00316 * 3 2 1 6 6 C 1.53001 * 109.47044 * 174.99751 * 3 2 1 7 7 C 1.50706 * 109.46848 * 185.00074 * 6 3 2 8 8 N 1.29946 * 126.28426 * 270.02363 * 7 6 3 9 9 O 1.21309 * 110.24521 * 179.68915 * 8 7 6 10 10 C 1.33639 * 109.80928 * 0.46841 * 9 8 7 11 11 C 1.50706 * 126.55037 * 179.79972 * 10 9 8 12 12 C 1.52997 * 109.47238 * 269.69219 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99907 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99654 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47022 * 89.99986 * 17 15 13 19 19 H 1.48502 * 109.46769 * 209.99494 * 17 15 13 20 20 H 1.48495 * 109.47280 * 329.99669 * 17 15 13 21 21 N 1.31128 * 106.90120 * 359.54177 * 10 9 8 22 22 H 1.09004 * 109.47447 * 299.99910 * 1 2 3 23 23 H 1.09002 * 109.47589 * 60.00118 * 1 2 3 24 24 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47032 * 240.00001 * 2 1 3 26 26 H 1.09000 * 109.46986 * 120.00322 * 2 1 3 27 27 H 1.09000 * 109.47336 * 59.99477 * 5 3 2 28 28 H 1.09004 * 109.47365 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47201 * 299.99622 * 5 3 2 30 30 H 1.08996 * 109.46965 * 65.00269 * 6 3 2 31 31 H 1.08999 * 109.47236 * 305.00467 * 6 3 2 32 32 H 1.09001 * 109.46953 * 29.68831 * 11 10 9 33 33 H 1.09000 * 109.47318 * 149.68429 * 11 10 9 34 34 H 1.09001 * 109.46832 * 299.99686 * 12 11 10 35 35 H 1.09004 * 109.47261 * 59.99705 * 12 11 10 36 36 H 0.96999 * 119.99682 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1266 -1.3072 6 6 3.5648 1.4444 0.1258 7 6 4.0569 2.8634 0.2493 8 7 4.3935 3.6486 -0.7298 9 8 4.7410 4.7290 -0.3012 10 6 4.6661 4.7321 1.0331 11 6 5.0129 5.8778 1.9488 12 6 6.4887 5.7876 2.3422 13 6 6.8355 6.9335 3.2573 14 1 6.0790 7.6539 3.5312 15 6 8.1186 7.0618 3.7457 16 7 8.4212 8.0616 4.5447 17 14 9.4270 5.8154 3.2724 18 1 10.1177 6.2673 2.0380 19 1 10.4142 5.6914 4.3748 20 1 8.7892 4.4967 3.0284 21 7 4.2280 3.5498 1.3932 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.5488 2.1252 -1.3968 28 1 1.9989 3.1542 -1.3074 29 1 2.0698 1.5876 -2.1491 30 1 4.0029 0.9837 -0.7596 31 1 3.8570 0.8800 1.0113 32 1 4.8310 6.8216 1.4347 33 1 4.3942 5.8270 2.8447 34 1 6.6705 4.8437 2.8563 35 1 7.1074 5.8384 1.4462 36 1 9.3239 8.1520 4.8880 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601399594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:08 Heat of formation + Delta-G solvation = 12.831282 kcal Electronic energy + Delta-G solvation = -16545.333172 eV Core-core repulsion = 13837.979799 eV Total energy + Delta-G solvation = -2707.353373 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.55699 -38.51006 -36.88807 -35.99887 -34.39517 -32.48788 -31.17048 -28.71756 -28.02721 -25.49084 -24.38186 -23.21094 -21.85203 -20.96724 -19.20584 -18.94886 -18.18733 -16.47332 -16.33012 -15.78899 -15.61326 -15.59441 -14.96921 -14.73227 -14.31555 -13.72714 -13.65070 -13.56443 -13.13574 -12.92989 -12.83963 -12.75883 -12.46103 -12.23417 -12.09222 -11.90996 -11.78272 -11.67953 -11.58075 -11.46031 -11.44860 -10.78058 -10.75105 -8.30163 -6.34695 0.12835 1.22734 1.35479 1.37885 1.47795 1.85533 2.34546 2.68257 3.05403 3.06647 3.81139 3.83912 3.91019 4.14742 4.34216 4.39155 4.43256 4.46159 4.57797 4.66302 4.72795 4.77494 4.84547 4.89282 4.97883 5.07461 5.11749 5.17030 5.21802 5.23034 5.35282 5.43365 5.49965 5.57128 6.22619 6.72779 7.15917 7.29906 8.85615 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046543 B = 0.004387 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.444354 B = 6380.297940 C = 6451.677720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.081 4.081 4 H 0.061 0.939 5 C -0.146 4.146 6 C -0.025 4.025 7 C 0.172 3.828 8 N -0.405 5.405 9 O 0.058 5.942 10 C 0.204 3.796 11 C -0.009 4.009 12 C -0.003 4.003 13 C -0.528 4.528 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.943 5.943 17 Si 0.939 3.061 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.256 1.256 21 N -0.509 5.509 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.020 0.980 35 H 0.023 0.977 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.014 -15.946 -10.802 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.101 4.101 4 H 0.080 0.920 5 C -0.203 4.203 6 C -0.064 4.064 7 C -0.101 4.101 8 N -0.118 5.118 9 O 0.005 5.995 10 C -0.015 4.015 11 C -0.048 4.048 12 C -0.041 4.041 13 C -0.566 4.566 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.583 5.583 17 Si 0.763 3.237 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.181 1.181 21 N -0.244 5.244 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.038 0.962 35 H 0.041 0.959 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.031 -16.404 -11.266 23.787 hybrid contribution 0.968 0.300 0.246 1.043 sum -12.064 -16.104 -11.020 22.942 Atomic orbital electron populations 1.21820 0.95163 1.02257 1.01874 1.21515 0.96511 0.93798 1.03108 1.21106 0.92071 0.98402 0.98536 0.92011 1.21885 1.01990 0.99304 0.97154 1.20306 0.96780 0.83973 1.05321 1.26445 0.98959 1.01367 0.83284 1.74572 1.19754 0.93489 1.23998 1.85264 1.62294 1.28694 1.23245 1.29409 0.92627 0.96468 0.83018 1.20294 0.98801 0.90559 0.95152 1.19468 0.91758 0.96659 0.96247 1.21258 0.96505 1.10477 1.28378 0.92950 1.25813 1.00923 0.97126 0.94514 1.70021 1.21180 1.32543 1.34573 0.85823 0.79050 0.80383 0.78408 1.19087 1.20767 1.18054 1.71949 1.20485 1.03639 1.28336 0.93181 0.92375 0.91606 0.90647 0.91038 0.91109 0.95339 0.91686 0.87868 0.87809 0.86915 0.87105 0.96192 0.95865 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.67 71.98 0.70 -1.21 16 2 C -0.11 -1.50 5.40 30.59 0.17 -1.34 16 3 C -0.08 -1.52 2.38 -10.80 -0.03 -1.55 16 4 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 5 C -0.15 -2.81 8.76 71.98 0.63 -2.18 16 6 C -0.03 -0.55 5.32 29.85 0.16 -0.39 16 7 C 0.17 5.33 6.68 138.47 0.93 6.26 16 8 N -0.41 -13.52 11.46 -60.32 -0.69 -14.21 16 9 O 0.06 2.03 11.31 74.86 0.85 2.87 16 10 C 0.20 7.22 7.77 88.38 0.69 7.91 16 11 C -0.01 -0.33 5.78 29.85 0.17 -0.16 16 12 C 0.00 -0.12 4.02 29.85 0.12 0.00 16 13 C -0.53 -28.71 9.66 25.60 0.25 -28.46 16 14 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 15 C 0.01 0.81 5.47 84.66 0.46 1.27 16 16 N -0.94 -57.24 13.96 21.45 0.30 -56.94 16 17 Si 0.94 43.55 27.47 68.60 1.88 45.44 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.26 -11.40 6.54 99.48 0.65 -10.75 16 21 N -0.51 -17.96 11.55 -303.20 -3.50 -21.46 16 22 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 23 H 0.06 0.70 6.57 -2.39 -0.02 0.69 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 1.16 6.56 -2.39 -0.02 1.14 16 28 H 0.03 0.69 6.84 -2.38 -0.02 0.67 16 29 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 33 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 34 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 35 H 0.02 1.02 7.57 -2.38 -0.02 1.00 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -63.50 299.86 4.07 -59.43 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 0.99 Total: 4.72 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.24 Total: -19.85 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -3.89 Total: -92.61 kcal Atomic # 8 Polarization: 2.03 SS G_CDS: 0.85 Total: 2.87 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.44 kcal Total: -63.50 4.07 -59.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601399594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.260 kcal (2) G-P(sol) polarization free energy of solvation -63.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds