Wall clock time and date at job start Sun Mar 29 2020 22:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 H 1.09001 * 110.54477 * 308.66461 * 3 2 1 5 5 C 1.51670 * 110.60523 * 71.68962 * 3 2 1 6 6 O 1.21298 * 127.50294 * 298.50936 * 5 3 2 7 7 N 1.34952 * 105.00023 * 118.51433 * 5 3 2 8 8 C 1.46502 * 124.44031 * 180.02562 * 7 5 3 9 9 C 1.50696 * 109.47606 * 89.97442 * 8 7 5 10 10 H 1.08004 * 119.99488 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00211 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00090 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99900 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47209 * 59.99471 * 13 11 9 15 15 H 1.48492 * 109.47004 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47129 * 299.99800 * 13 11 9 17 17 N 1.39149 * 111.12558 * 359.97438 * 7 5 3 18 18 C 1.27577 * 113.16142 * 359.97438 * 17 7 5 19 19 C 1.50692 * 126.41806 * 180.02562 * 18 17 7 20 20 C 1.53004 * 109.47311 * 244.83677 * 19 18 17 21 21 C 1.53006 * 109.47141 * 4.84013 * 19 18 17 22 22 H 1.08995 * 109.47405 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46758 * 300.00019 * 1 2 3 24 24 H 1.09000 * 109.47202 * 59.99263 * 1 2 3 25 25 H 1.08994 * 109.47276 * 120.00286 * 2 1 3 26 26 H 1.09004 * 109.46800 * 240.00489 * 2 1 3 27 27 H 1.09001 * 109.47101 * 209.97407 * 8 7 5 28 28 H 1.09002 * 109.47012 * 329.96707 * 8 7 5 29 29 H 0.96996 * 119.99939 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.47313 * 124.83821 * 19 18 17 31 31 H 1.08996 * 109.46962 * 179.97438 * 20 19 18 32 32 H 1.08997 * 109.46788 * 299.99872 * 20 19 18 33 33 H 1.09003 * 109.46723 * 60.00370 * 20 19 18 34 34 H 1.08994 * 109.47137 * 59.03691 * 21 19 18 35 35 H 1.08999 * 109.46783 * 179.04432 * 21 19 18 36 36 H 1.09003 * 109.46626 * 299.03694 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5663 2.0157 -0.7970 5 6 1.7975 2.0944 1.3478 6 8 0.7313 2.2910 1.8918 7 7 3.0258 2.4083 1.8101 8 6 3.2853 3.0629 3.0948 9 6 3.4613 2.0168 4.1652 10 1 3.3869 0.9691 3.9137 11 6 3.7163 2.3972 5.4657 12 7 3.8064 3.6730 5.7720 13 14 3.9352 1.1004 6.7923 14 1 5.0820 0.2240 6.4434 15 1 4.1968 1.7640 8.0947 16 1 2.7000 0.2824 6.8935 17 7 4.0139 2.0277 0.9072 18 6 3.5474 1.4736 -0.1430 19 6 4.3465 0.9491 -1.3080 20 6 4.0184 1.7650 -2.5601 21 6 5.8399 1.0696 -0.9975 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 4.1924 3.6626 3.0204 28 1 2.4440 3.7069 3.3509 29 1 3.9862 3.9406 6.6868 30 1 4.0945 -0.0973 -1.4798 31 1 4.5968 1.3859 -3.4026 32 1 2.9546 1.6790 -2.7812 33 1 4.2706 2.8114 -2.3883 34 1 6.0705 0.5023 -0.0959 35 1 6.4177 0.6746 -1.8332 36 1 6.0953 2.1179 -0.8426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601930426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:26 Heat of formation + Delta-G solvation = -5.886445 kcal Electronic energy + Delta-G solvation = -17400.163721 eV Core-core repulsion = 14691.998686 eV Total energy + Delta-G solvation = -2708.165035 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.79957 -37.05408 -35.30832 -34.01517 -33.02370 -30.75953 -28.01074 -26.95869 -26.80511 -23.54697 -22.73978 -21.64252 -19.90223 -18.43594 -16.76425 -16.09394 -15.51403 -15.11612 -14.86275 -14.58964 -13.97954 -13.70916 -13.23823 -12.94788 -12.70907 -12.32695 -12.23909 -12.06164 -11.67970 -11.49114 -11.46051 -11.30219 -11.17627 -11.03790 -10.87998 -10.75672 -10.72298 -10.30127 -9.88291 -9.62714 -8.89323 -8.50156 -7.76768 -6.12572 -4.18166 2.12166 3.24712 3.30091 3.33148 3.39841 3.41748 4.21420 4.37424 4.40828 4.92687 4.99043 5.13047 5.16164 5.21645 5.26149 5.50122 5.59638 5.63466 5.72136 5.81818 5.85809 5.92390 5.99111 6.11577 6.20545 6.26677 6.37537 6.46555 6.57693 7.12323 7.24902 7.34274 7.82141 8.07251 8.48903 8.64854 8.87432 9.46529 10.95752 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023636 B = 0.007467 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.360847 B = 3749.104945 C = 4281.848241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.090 4.090 3 C -0.139 4.139 4 H 0.121 0.879 5 C 0.495 3.505 6 O -0.503 6.503 7 N -0.443 5.443 8 C 0.267 3.733 9 C -0.532 4.532 10 H 0.058 0.942 11 C 0.064 3.936 12 N -0.894 5.894 13 Si 0.903 3.097 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.275 1.275 17 N -0.208 5.208 18 C 0.055 3.945 19 C -0.010 4.010 20 C -0.143 4.143 21 C -0.143 4.143 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.266 0.734 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 -6.246 -16.273 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.129 4.129 3 C -0.163 4.163 4 H 0.138 0.862 5 C 0.281 3.719 6 O -0.377 6.377 7 N -0.262 5.262 8 C 0.150 3.850 9 C -0.571 4.571 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.730 3.270 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.201 1.201 17 N -0.014 5.014 18 C -0.139 4.139 19 C -0.030 4.030 20 C -0.202 4.202 21 C -0.201 4.201 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.465 -5.571 -15.074 16.077 hybrid contribution -0.575 -0.763 0.628 1.143 sum -0.110 -6.334 -14.446 15.774 Atomic orbital electron populations 1.21855 0.94832 1.01667 1.03172 1.21153 0.96696 0.92267 1.02735 1.21802 0.95552 1.00079 0.98892 0.86164 1.21100 0.84882 0.79067 0.86832 1.90683 1.26999 1.54959 1.65035 1.50416 1.02093 1.55014 1.18727 1.19435 0.98485 0.92687 0.74396 1.21318 1.49890 0.93141 0.92729 0.92350 1.24916 0.94849 0.95723 0.98397 1.69913 1.48557 1.14812 1.19941 0.86467 0.78779 0.81311 0.80395 1.20060 1.20949 1.20082 1.74520 1.19368 1.08237 0.99274 1.25030 0.92701 1.00374 0.95747 1.19585 0.94359 0.99497 0.89584 1.21822 1.01769 1.00462 0.96126 1.21738 0.93487 1.03210 1.01617 0.92641 0.90917 0.92782 0.91501 0.90757 0.93520 0.93167 0.92389 0.89122 0.91751 0.92310 0.92219 0.91864 0.92451 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.79 37.16 0.36 -1.72 16 2 C -0.09 -1.23 5.44 -26.73 -0.15 -1.38 16 3 C -0.14 -2.23 3.01 -92.08 -0.28 -2.51 16 4 H 0.12 1.66 8.14 -51.93 -0.42 1.23 16 5 C 0.50 10.99 7.59 -10.43 -0.08 10.91 16 6 O -0.50 -12.58 16.29 5.54 0.09 -12.49 16 7 N -0.44 -10.57 3.52 -61.07 -0.22 -10.78 16 8 C 0.27 7.37 5.99 -5.19 -0.03 7.34 16 9 C -0.53 -15.65 9.39 -34.44 -0.32 -15.97 16 10 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 11 C 0.06 1.85 5.46 -17.82 -0.10 1.76 16 12 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 13 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 17 N -0.21 -4.24 11.34 35.54 0.40 -3.84 16 18 C 0.06 0.86 5.87 -78.72 -0.46 0.40 16 19 C -0.01 -0.11 3.32 -91.77 -0.30 -0.42 16 20 C -0.14 -1.27 9.17 37.16 0.34 -0.92 16 21 C -0.14 -1.62 8.70 37.16 0.32 -1.29 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 1.20 6.51 -51.92 -0.34 0.86 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 26 H 0.07 0.77 7.78 -51.93 -0.40 0.37 16 27 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.05 1.48 8.04 -51.93 -0.42 1.06 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.09 0.83 7.83 -51.93 -0.41 0.42 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 304.83 15.07 4.59 4.59 Total: -1.00 -32.83 304.83 -5.86 -38.69 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.76 Total: -3.55 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -0.69 Total: -3.80 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.92 Total: -40.61 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.83 -5.86 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601930426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.805 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds