Wall clock time and date at job start Sun Mar 29 2020 22:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 H 1.09001 * 110.54477 * 308.66461 * 3 2 1 5 5 C 1.51670 * 110.60523 * 71.68962 * 3 2 1 6 6 O 1.21298 * 127.50294 * 298.50936 * 5 3 2 7 7 N 1.34952 * 105.00023 * 118.51433 * 5 3 2 8 8 C 1.46502 * 124.44031 * 180.02562 * 7 5 3 9 9 C 1.50696 * 109.47606 * 89.97442 * 8 7 5 10 10 H 1.08004 * 119.99488 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00211 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00090 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99900 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47209 * 59.99471 * 13 11 9 15 15 H 1.48492 * 109.47004 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47129 * 299.99800 * 13 11 9 17 17 N 1.39149 * 111.12558 * 359.97438 * 7 5 3 18 18 C 1.27577 * 113.16142 * 359.97438 * 17 7 5 19 19 C 1.50692 * 126.41806 * 180.02562 * 18 17 7 20 20 C 1.53004 * 109.47311 * 244.83677 * 19 18 17 21 21 C 1.53006 * 109.47141 * 4.84013 * 19 18 17 22 22 H 1.08995 * 109.47405 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46758 * 300.00019 * 1 2 3 24 24 H 1.09000 * 109.47202 * 59.99263 * 1 2 3 25 25 H 1.08994 * 109.47276 * 120.00286 * 2 1 3 26 26 H 1.09004 * 109.46800 * 240.00489 * 2 1 3 27 27 H 1.09001 * 109.47101 * 209.97407 * 8 7 5 28 28 H 1.09002 * 109.47012 * 329.96707 * 8 7 5 29 29 H 0.96996 * 119.99939 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.47313 * 124.83821 * 19 18 17 31 31 H 1.08996 * 109.46962 * 179.97438 * 20 19 18 32 32 H 1.08997 * 109.46788 * 299.99872 * 20 19 18 33 33 H 1.09003 * 109.46723 * 60.00370 * 20 19 18 34 34 H 1.08994 * 109.47137 * 59.03691 * 21 19 18 35 35 H 1.08999 * 109.46783 * 179.04432 * 21 19 18 36 36 H 1.09003 * 109.46626 * 299.03694 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5663 2.0157 -0.7970 5 6 1.7975 2.0944 1.3478 6 8 0.7313 2.2910 1.8918 7 7 3.0258 2.4083 1.8101 8 6 3.2853 3.0629 3.0948 9 6 3.4613 2.0168 4.1652 10 1 3.3869 0.9691 3.9137 11 6 3.7163 2.3972 5.4657 12 7 3.8064 3.6730 5.7720 13 14 3.9352 1.1004 6.7923 14 1 5.0820 0.2240 6.4434 15 1 4.1968 1.7640 8.0947 16 1 2.7000 0.2824 6.8935 17 7 4.0139 2.0277 0.9072 18 6 3.5474 1.4736 -0.1430 19 6 4.3465 0.9491 -1.3080 20 6 4.0184 1.7650 -2.5601 21 6 5.8399 1.0696 -0.9975 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 4.1924 3.6626 3.0204 28 1 2.4440 3.7069 3.3509 29 1 3.9862 3.9406 6.6868 30 1 4.0945 -0.0973 -1.4798 31 1 4.5968 1.3859 -3.4026 32 1 2.9546 1.6790 -2.7812 33 1 4.2706 2.8114 -2.3883 34 1 6.0705 0.5023 -0.0959 35 1 6.4177 0.6746 -1.8332 36 1 6.0953 2.1179 -0.8426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601930426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:26 Heat of formation + Delta-G solvation = -27.945600 kcal Electronic energy + Delta-G solvation = -17401.120278 eV Core-core repulsion = 14691.998686 eV Total energy + Delta-G solvation = -2709.121592 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.34919 -38.65978 -36.74300 -35.35422 -34.87768 -32.50617 -29.40515 -28.76574 -27.71335 -25.44643 -23.92866 -23.05243 -21.36425 -19.85707 -18.89707 -17.83357 -17.07754 -16.52129 -16.38904 -16.18036 -15.33559 -15.00499 -14.66968 -14.35622 -14.09701 -13.74423 -13.72988 -13.42519 -13.21568 -12.91646 -12.79627 -12.72406 -12.55730 -12.38347 -12.29335 -12.09537 -11.98069 -11.83613 -11.60493 -11.27680 -10.78879 -10.46764 -9.56374 -8.35652 -6.52773 0.71625 1.30344 1.35377 1.42751 1.62962 1.77140 2.31089 2.83967 2.95502 3.06572 3.71804 3.88069 4.16310 4.26011 4.30970 4.42411 4.47116 4.59063 4.78322 4.83071 4.88706 4.93970 5.03556 5.07109 5.11452 5.14905 5.23780 5.30482 5.42620 5.43276 5.52635 5.57354 5.66165 5.83190 6.50784 6.81479 7.04257 7.19260 8.72285 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023636 B = 0.007467 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.360847 B = 3749.104945 C = 4281.848241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 C -0.127 4.127 4 H 0.156 0.844 5 C 0.473 3.527 6 O -0.550 6.550 7 N -0.466 5.466 8 C 0.284 3.716 9 C -0.555 4.555 10 H 0.048 0.952 11 C 0.013 3.987 12 N -0.924 5.924 13 Si 0.975 3.025 14 H -0.263 1.263 15 H -0.269 1.269 16 H -0.273 1.273 17 N -0.263 5.263 18 C 0.098 3.902 19 C -0.010 4.010 20 C -0.140 4.140 21 C -0.144 4.144 22 H 0.077 0.923 23 H 0.029 0.971 24 H 0.078 0.922 25 H 0.039 0.961 26 H 0.127 0.873 27 H 0.026 0.974 28 H 0.014 0.986 29 H 0.273 0.727 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 -8.784 -19.018 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.124 4.124 3 C -0.151 4.151 4 H 0.173 0.827 5 C 0.262 3.738 6 O -0.427 6.427 7 N -0.284 5.284 8 C 0.164 3.836 9 C -0.593 4.593 10 H 0.066 0.934 11 C -0.187 4.187 12 N -0.562 5.562 13 Si 0.798 3.202 14 H -0.188 1.188 15 H -0.193 1.193 16 H -0.198 1.198 17 N -0.068 5.068 18 C -0.095 4.095 19 C -0.030 4.030 20 C -0.199 4.199 21 C -0.201 4.201 22 H 0.096 0.904 23 H 0.048 0.952 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.145 0.855 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.919 -8.110 -17.853 19.630 hybrid contribution -0.689 0.022 1.323 1.492 sum 0.230 -8.088 -16.530 18.404 Atomic orbital electron populations 1.21837 0.94372 1.02850 1.02239 1.21274 0.97111 0.90092 1.03909 1.21925 0.95978 1.01646 0.95519 0.82713 1.22209 0.83753 0.78754 0.89105 1.90635 1.28239 1.56913 1.66930 1.50280 1.03820 1.55710 1.18542 1.18792 0.95819 0.92185 0.76796 1.21514 1.50960 0.92853 0.94019 0.93388 1.25900 0.93914 0.98197 1.00703 1.70024 1.48567 1.16788 1.20863 0.85359 0.78987 0.78417 0.77436 1.18804 1.19334 1.19794 1.74617 1.18500 1.12732 1.00934 1.26183 0.93089 0.95345 0.94866 1.20019 0.93167 1.01694 0.88162 1.21847 1.03421 0.99185 0.95404 1.21757 0.94391 1.01854 1.02115 0.90411 0.95218 0.90344 0.94161 0.85471 0.95572 0.96763 0.91806 0.85330 0.88698 0.90689 0.93736 0.94050 0.88893 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.79 71.98 0.70 -3.02 16 2 C -0.09 -2.07 5.44 30.59 0.17 -1.91 16 3 C -0.13 -3.84 3.01 -11.74 -0.04 -3.88 16 4 H 0.16 3.70 8.14 -2.39 -0.02 3.68 16 5 C 0.47 21.86 7.59 87.94 0.67 22.53 16 6 O -0.55 -29.25 16.29 -3.09 -0.05 -29.30 16 7 N -0.47 -23.50 3.52 -465.40 -1.64 -25.14 16 8 C 0.28 16.88 5.99 85.63 0.51 17.39 16 9 C -0.56 -34.39 9.39 25.60 0.24 -34.15 16 10 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 11 C 0.01 0.77 5.46 84.66 0.46 1.23 16 12 N -0.92 -57.23 13.29 21.45 0.28 -56.95 16 13 Si 0.98 46.28 29.54 68.60 2.03 48.31 16 14 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 17 N -0.26 -10.95 11.34 -40.84 -0.46 -11.41 16 18 C 0.10 2.90 5.87 46.83 0.27 3.18 16 19 C -0.01 -0.19 3.32 -11.54 -0.04 -0.22 16 20 C -0.14 -1.76 9.17 71.98 0.66 -1.10 16 21 C -0.14 -2.87 8.70 71.98 0.63 -2.25 16 22 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.03 0.97 6.51 -2.38 -0.02 0.95 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.20 8.11 -2.39 -0.02 1.18 16 26 H 0.13 1.82 7.78 -2.39 -0.02 1.80 16 27 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.01 0.93 8.04 -2.39 -0.02 0.91 16 29 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.13 1.50 7.83 -2.39 -0.02 1.48 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -79.01 304.83 5.44 -73.57 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 1.04 Total: 3.12 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 4.24 Total: -2.20 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -1.82 Total: -93.50 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.05 Total: -29.30 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -79.01 5.44 -73.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601930426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.622 kcal (2) G-P(sol) polarization free energy of solvation -79.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds