Wall clock time and date at job start Sun Mar 29 2020 22:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.50703 * 109.46912 * 180.02562 * 3 2 1 5 5 N 1.27565 * 126.41837 * 0.02562 * 4 3 2 6 6 N 1.39142 * 113.16639 * 179.97438 * 5 4 3 7 7 C 1.46506 * 124.44096 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47161 * 269.97615 * 7 6 5 9 9 H 1.07996 * 119.99599 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99516 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00641 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99521 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47014 * 90.00365 * 12 10 8 14 14 H 1.48494 * 109.47210 * 210.00175 * 12 10 8 15 15 H 1.48496 * 109.47112 * 330.00183 * 12 10 8 16 16 C 1.34945 * 111.12535 * 359.97438 * 6 5 4 17 17 O 1.21303 * 127.50519 * 180.02562 * 16 6 5 18 18 C 1.51443 * 126.41674 * 179.71727 * 4 3 2 19 19 H 1.09002 * 110.60978 * 61.51530 * 18 4 3 20 20 C 1.52998 * 110.60333 * 298.55048 * 18 4 3 21 21 C 1.52999 * 109.47041 * 175.00212 * 20 18 4 22 22 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 23 23 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 24 24 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 26 26 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 27 27 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 28 28 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 29 29 H 1.09001 * 109.46713 * 29.97578 * 7 6 5 30 30 H 1.08992 * 109.47558 * 149.97150 * 7 6 5 31 31 H 0.96996 * 119.99853 * 179.97438 * 11 10 8 32 32 H 1.08999 * 109.47034 * 295.00031 * 20 18 4 33 33 H 1.08998 * 109.47558 * 55.00278 * 20 18 4 34 34 H 1.09005 * 109.47374 * 179.97438 * 21 20 18 35 35 H 1.08999 * 109.47059 * 299.99803 * 21 20 18 36 36 H 1.09005 * 109.47281 * 59.99697 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3043 0.4160 -0.0016 6 7 5.6587 0.7350 -0.0025 7 6 6.7422 -0.2512 -0.0042 8 6 7.1153 -0.5899 1.4160 9 1 6.5970 -0.1182 2.2377 10 6 8.1178 -1.5029 1.6663 11 7 8.7487 -2.0777 0.6657 12 14 8.5808 -1.9223 3.4267 13 1 7.7607 -3.0685 3.8946 14 1 10.0193 -2.2858 3.4870 15 1 8.3306 -0.7461 4.2980 16 6 5.8435 2.0717 -0.0028 17 8 6.8979 2.6715 -0.0040 18 6 4.4460 2.6612 -0.0068 19 1 4.2826 3.2631 0.8871 20 6 4.2143 3.4948 -1.2687 21 6 5.0415 4.7795 -1.1903 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 6.4111 -1.1536 -0.5181 30 1 7.6093 0.1626 -0.5189 31 1 9.4541 -2.7196 0.8418 32 1 4.5173 2.9205 -2.1442 33 1 3.1570 3.7477 -1.3481 34 1 4.8768 5.3732 -2.0895 35 1 4.7385 5.3538 -0.3148 36 1 6.0988 4.5267 -1.1109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601932093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:05 Heat of formation + Delta-G solvation = -8.552606 kcal Electronic energy + Delta-G solvation = -17116.247143 eV Core-core repulsion = 14407.966494 eV Total energy + Delta-G solvation = -2708.280648 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76030 -36.93452 -35.10484 -34.19213 -33.02252 -31.12602 -28.20110 -27.74315 -26.06794 -23.29319 -22.13258 -21.55351 -20.19384 -18.56234 -16.66713 -16.26271 -15.50589 -15.15228 -14.88197 -14.51793 -14.32583 -13.71046 -13.17743 -12.91557 -12.87109 -12.62876 -12.27931 -12.07226 -11.57884 -11.50422 -11.44501 -11.32240 -11.16886 -11.03164 -10.81765 -10.73735 -10.61246 -10.30361 -9.90356 -9.60331 -8.89526 -8.50618 -7.76071 -6.12846 -4.18384 2.11927 3.26314 3.28562 3.33903 3.40424 3.41789 4.23706 4.34607 4.40208 4.93848 5.04396 5.09491 5.12288 5.21926 5.30733 5.48439 5.54537 5.56792 5.67296 5.73233 5.83581 5.87964 5.99215 6.10677 6.17297 6.25702 6.39997 6.43485 6.56238 7.12119 7.24713 7.34279 7.82115 8.06998 8.48626 8.64723 8.87513 9.46448 10.95484 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019754 B = 0.007422 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.067008 B = 3771.495564 C = 4796.743410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.034 4.034 4 C 0.050 3.950 5 N -0.209 5.209 6 N -0.443 5.443 7 C 0.267 3.733 8 C -0.532 4.532 9 H 0.059 0.941 10 C 0.063 3.937 11 N -0.894 5.894 12 Si 0.904 3.096 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.496 3.504 17 O -0.503 6.503 18 C -0.141 4.141 19 H 0.122 0.878 20 C -0.088 4.088 21 C -0.159 4.159 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.266 0.734 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.280 8.340 -2.970 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.072 4.072 4 C -0.143 4.143 5 N -0.016 5.016 6 N -0.262 5.262 7 C 0.150 3.850 8 C -0.570 4.570 9 H 0.077 0.923 10 C -0.139 4.139 11 N -0.532 5.532 12 Si 0.731 3.269 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.198 1.198 16 C 0.281 3.719 17 O -0.377 6.377 18 C -0.165 4.165 19 H 0.139 0.861 20 C -0.127 4.127 21 C -0.216 4.216 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.269 7.410 -3.019 16.359 hybrid contribution 0.507 0.416 1.068 1.253 sum -13.761 7.826 -1.951 15.951 Atomic orbital electron populations 1.21783 0.95897 1.01706 1.01469 1.21419 0.95016 0.95711 1.03806 1.20086 0.85356 0.98750 1.03053 1.25076 0.96669 0.90630 1.01924 1.74513 0.90697 1.26890 1.09484 1.50402 1.02402 1.07073 1.66354 1.19442 0.81216 0.86020 0.98359 1.21358 1.19146 1.24732 0.91804 0.92298 1.24919 0.95588 0.95517 0.97893 1.69923 1.24017 1.28414 1.30858 0.86402 0.77700 0.78724 0.84085 1.20393 1.20897 1.19842 1.21090 0.90385 0.83577 0.76811 1.90685 1.30961 1.66253 1.49786 1.21825 0.94468 0.97757 1.02489 0.86068 1.21139 1.00819 0.95856 0.94849 1.21865 1.02082 0.96407 1.01283 0.92848 0.92877 0.92681 0.91207 0.91050 0.89697 0.89689 0.93514 0.93150 0.92445 0.91739 0.90685 0.92660 0.92664 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.92 16 2 C -0.12 -1.36 5.44 -26.73 -0.15 -1.51 16 3 C -0.03 -0.35 5.80 -27.88 -0.16 -0.52 16 4 C 0.05 0.78 6.62 -78.72 -0.52 0.26 16 5 N -0.21 -4.23 11.33 35.53 0.40 -3.82 16 6 N -0.44 -10.53 3.52 -61.06 -0.22 -10.75 16 7 C 0.27 7.35 5.99 -5.19 -0.03 7.32 16 8 C -0.53 -15.65 9.39 -34.44 -0.32 -15.97 16 9 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 10 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 12 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.50 10.96 7.59 -10.43 -0.08 10.88 16 17 O -0.50 -12.56 16.25 5.54 0.09 -12.47 16 18 C -0.14 -2.25 3.01 -92.08 -0.28 -2.52 16 19 H 0.12 1.73 8.14 -51.93 -0.42 1.31 16 20 C -0.09 -1.12 5.44 -26.73 -0.15 -1.27 16 21 C -0.16 -2.00 9.78 37.16 0.36 -1.64 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 0.71 8.02 -51.93 -0.42 0.29 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.05 1.48 8.03 -51.93 -0.42 1.07 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 33 H 0.07 0.71 8.00 -51.93 -0.42 0.30 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.14 6.47 -51.93 -0.34 0.81 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -32.90 305.87 -6.23 -39.12 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.78 Total: -3.77 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.05 Total: -4.13 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.92 Total: -40.54 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.90 -6.23 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.571 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds