Wall clock time and date at job start Sun Mar 29 2020 22:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.50703 * 109.46912 * 180.02562 * 3 2 1 5 5 N 1.27565 * 126.41837 * 0.02562 * 4 3 2 6 6 N 1.39142 * 113.16639 * 179.97438 * 5 4 3 7 7 C 1.46506 * 124.44096 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47161 * 269.97615 * 7 6 5 9 9 H 1.07996 * 119.99599 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99516 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00641 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99521 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47014 * 90.00365 * 12 10 8 14 14 H 1.48494 * 109.47210 * 210.00175 * 12 10 8 15 15 H 1.48496 * 109.47112 * 330.00183 * 12 10 8 16 16 C 1.34945 * 111.12535 * 359.97438 * 6 5 4 17 17 O 1.21303 * 127.50519 * 180.02562 * 16 6 5 18 18 C 1.51443 * 126.41674 * 179.71727 * 4 3 2 19 19 H 1.09002 * 110.60978 * 61.51530 * 18 4 3 20 20 C 1.52998 * 110.60333 * 298.55048 * 18 4 3 21 21 C 1.52999 * 109.47041 * 175.00212 * 20 18 4 22 22 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 23 23 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 24 24 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 26 26 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 27 27 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 28 28 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 29 29 H 1.09001 * 109.46713 * 29.97578 * 7 6 5 30 30 H 1.08992 * 109.47558 * 149.97150 * 7 6 5 31 31 H 0.96996 * 119.99853 * 179.97438 * 11 10 8 32 32 H 1.08999 * 109.47034 * 295.00031 * 20 18 4 33 33 H 1.08998 * 109.47558 * 55.00278 * 20 18 4 34 34 H 1.09005 * 109.47374 * 179.97438 * 21 20 18 35 35 H 1.08999 * 109.47059 * 299.99803 * 21 20 18 36 36 H 1.09005 * 109.47281 * 59.99697 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3043 0.4160 -0.0016 6 7 5.6587 0.7350 -0.0025 7 6 6.7422 -0.2512 -0.0042 8 6 7.1153 -0.5899 1.4160 9 1 6.5970 -0.1182 2.2377 10 6 8.1178 -1.5029 1.6663 11 7 8.7487 -2.0777 0.6657 12 14 8.5808 -1.9223 3.4267 13 1 7.7607 -3.0685 3.8946 14 1 10.0193 -2.2858 3.4870 15 1 8.3306 -0.7461 4.2980 16 6 5.8435 2.0717 -0.0028 17 8 6.8979 2.6715 -0.0040 18 6 4.4460 2.6612 -0.0068 19 1 4.2826 3.2631 0.8871 20 6 4.2143 3.4948 -1.2687 21 6 5.0415 4.7795 -1.1903 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 6.4111 -1.1536 -0.5181 30 1 7.6093 0.1626 -0.5189 31 1 9.4541 -2.7196 0.8418 32 1 4.5173 2.9205 -2.1442 33 1 3.1570 3.7477 -1.3481 34 1 4.8768 5.3732 -2.0895 35 1 4.7385 5.3538 -0.3148 36 1 6.0988 4.5267 -1.1109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601932093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:05 Heat of formation + Delta-G solvation = -30.494095 kcal Electronic energy + Delta-G solvation = -17117.198597 eV Core-core repulsion = 14407.966494 eV Total energy + Delta-G solvation = -2709.232103 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.30185 -38.56682 -36.53049 -35.37842 -34.88369 -32.74178 -29.76712 -29.05804 -27.55997 -25.13203 -23.36616 -22.63589 -21.61957 -20.03066 -18.87505 -17.88459 -17.11766 -16.45872 -16.29084 -16.01956 -15.81977 -15.02017 -14.66129 -14.30108 -14.05739 -13.92816 -13.67538 -13.55257 -13.26464 -12.99583 -12.76621 -12.68352 -12.42812 -12.37065 -12.34229 -12.06119 -11.97973 -11.68134 -11.44151 -11.26099 -10.78443 -10.44448 -9.53790 -8.35578 -6.52725 0.73525 1.30760 1.34404 1.44363 1.65604 1.77565 2.31344 2.86781 2.96479 3.05964 3.76177 3.92418 4.17958 4.30769 4.36183 4.45344 4.47035 4.63482 4.79494 4.82260 4.88937 4.93025 4.94821 5.05120 5.09871 5.15889 5.32019 5.33938 5.44204 5.45194 5.53410 5.61833 5.66986 5.83372 6.51273 6.82713 7.05606 7.19677 8.72487 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019754 B = 0.007422 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.067008 B = 3771.495564 C = 4796.743410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C -0.033 4.033 4 C 0.096 3.904 5 N -0.265 5.265 6 N -0.466 5.466 7 C 0.284 3.716 8 C -0.555 4.555 9 H 0.048 0.952 10 C 0.012 3.988 11 N -0.924 5.924 12 Si 0.977 3.023 13 H -0.263 1.263 14 H -0.271 1.271 15 H -0.272 1.272 16 C 0.473 3.527 17 O -0.551 6.551 18 C -0.130 4.130 19 H 0.150 0.850 20 C -0.082 4.082 21 C -0.158 4.158 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.026 0.974 30 H 0.014 0.986 31 H 0.273 0.727 32 H 0.047 0.953 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.501 9.903 -2.081 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.071 4.071 4 C -0.097 4.097 5 N -0.071 5.071 6 N -0.283 5.283 7 C 0.164 3.836 8 C -0.593 4.593 9 H 0.066 0.934 10 C -0.188 4.188 11 N -0.563 5.563 12 Si 0.800 3.200 13 H -0.188 1.188 14 H -0.196 1.196 15 H -0.197 1.197 16 C 0.261 3.739 17 O -0.428 6.428 18 C -0.153 4.153 19 H 0.168 0.832 20 C -0.121 4.121 21 C -0.215 4.215 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.147 0.853 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.532 8.967 -2.144 19.808 hybrid contribution 1.385 -0.014 0.726 1.564 sum -16.146 8.953 -1.419 18.517 Atomic orbital electron populations 1.21727 0.93291 1.02076 1.03044 1.21399 0.97195 0.95875 1.01684 1.20515 0.80932 0.99028 1.06665 1.26203 0.98689 0.89234 0.95579 1.74615 0.88891 1.28720 1.14883 1.50261 1.03649 1.07038 1.67399 1.18789 0.81768 0.85973 0.97083 1.21549 1.20014 1.25573 0.92163 0.93353 1.25907 0.95067 0.94948 1.02841 1.70033 1.24312 1.28660 1.33269 0.85287 0.78029 0.78716 0.78018 1.18761 1.19586 1.19716 1.22231 0.92653 0.83225 0.75780 1.90635 1.33303 1.66922 1.51982 1.21956 0.89738 0.98082 1.05542 0.83247 1.21268 1.03935 0.94844 0.92004 1.21850 0.99398 0.96846 1.03402 0.91423 0.91042 0.93103 0.93158 0.93682 0.85466 0.86068 0.95600 0.96809 0.91824 0.93384 0.85325 0.90196 0.90875 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.12 -2.47 5.44 30.59 0.17 -2.30 16 3 C -0.03 -0.54 5.80 29.85 0.17 -0.36 16 4 C 0.10 2.75 6.62 46.83 0.31 3.06 16 5 N -0.27 -10.91 11.33 -40.84 -0.46 -11.37 16 6 N -0.47 -23.38 3.52 -465.39 -1.64 -25.02 16 7 C 0.28 16.85 5.99 85.63 0.51 17.36 16 8 C -0.55 -34.33 9.39 25.60 0.24 -34.09 16 9 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 10 C 0.01 0.74 5.46 84.65 0.46 1.20 16 11 N -0.92 -57.21 13.29 21.45 0.28 -56.93 16 12 Si 0.98 46.29 29.54 68.60 2.03 48.31 16 13 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 16 C 0.47 21.72 7.59 87.94 0.67 22.39 16 17 O -0.55 -29.26 16.25 -3.10 -0.05 -29.31 16 18 C -0.13 -3.85 3.01 -11.74 -0.04 -3.89 16 19 H 0.15 3.72 8.14 -2.39 -0.02 3.70 16 20 C -0.08 -1.81 5.44 30.59 0.17 -1.65 16 21 C -0.16 -3.59 9.78 71.98 0.70 -2.88 16 22 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.13 1.20 8.02 -2.39 -0.02 1.18 16 28 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.01 0.90 8.03 -2.39 -0.02 0.88 16 31 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 32 H 0.05 1.24 8.12 -2.39 -0.02 1.22 16 33 H 0.13 1.56 8.00 -2.39 -0.02 1.54 16 34 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.03 0.94 6.47 -2.38 -0.02 0.92 16 Total: -1.00 -79.30 305.87 5.28 -74.03 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.04 Total: 2.66 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 4.08 Total: -2.36 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -1.82 Total: -93.32 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.05 Total: -29.31 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -79.30 5.28 -74.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.531 kcal (2) G-P(sol) polarization free energy of solvation -79.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds