Wall clock time and date at job start Sun Mar 29 2020 22:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47357 * 2 1 4 4 C 1.52990 * 109.47162 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47173 * 180.02562 * 4 3 2 6 6 N 1.27563 * 126.41324 * 0.02654 * 5 4 3 7 7 N 1.39154 * 113.16127 * 179.97438 * 6 5 4 8 8 C 1.46506 * 124.43563 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47006 * 270.01862 * 8 7 6 10 10 H 1.08005 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00046 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.34949 * 111.12371 * 0.25993 * 7 6 5 18 18 O 1.21304 * 127.50443 * 179.70944 * 17 7 6 19 19 C 1.51435 * 126.41498 * 179.97438 * 5 4 3 20 20 H 1.08992 * 110.61414 * 298.70666 * 19 5 4 21 21 C 1.53003 * 110.61034 * 61.52616 * 19 5 4 22 22 H 1.09003 * 109.47217 * 60.00100 * 1 2 3 23 23 H 1.08994 * 109.47477 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47542 * 300.00436 * 1 2 3 25 25 H 1.08995 * 109.46933 * 239.99987 * 2 1 3 26 26 H 1.08998 * 109.46863 * 120.00194 * 2 1 3 27 27 H 1.09005 * 109.46820 * 59.99393 * 3 2 1 28 28 H 1.09003 * 109.46875 * 300.00109 * 3 2 1 29 29 H 1.09000 * 109.47520 * 60.00480 * 4 3 2 30 30 H 1.09003 * 109.47438 * 299.99916 * 4 3 2 31 31 H 1.09001 * 109.47068 * 150.02526 * 8 7 6 32 32 H 1.08993 * 109.47068 * 30.01980 * 8 7 6 33 33 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 34 34 H 1.09000 * 109.46971 * 59.99317 * 21 19 5 35 35 H 1.09000 * 109.47455 * 179.97438 * 21 19 5 36 36 H 1.09007 * 109.46767 * 299.99764 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 7 3.3570 3.9194 0.0018 7 7 4.1093 5.0901 0.0029 8 6 3.5406 6.4403 0.0041 9 6 3.3452 6.9043 -1.4162 10 1 3.6170 6.2580 -2.2377 11 6 2.8185 8.1536 -1.6670 12 7 2.4871 8.9404 -0.6667 13 14 2.5756 8.7285 -3.4276 14 1 1.9993 10.0972 -3.4264 15 1 1.6501 7.8019 -4.1278 16 1 3.8847 8.7438 -4.1285 17 6 5.4312 4.8187 -0.0026 18 8 6.3481 5.6128 -0.0081 19 6 5.5210 3.3045 0.0026 20 1 6.0301 2.9475 0.8977 21 6 6.2363 2.8085 -1.2558 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9285 -0.8891 30 1 3.9330 0.9287 0.8909 31 1 4.2200 7.1201 0.5182 32 1 2.5796 6.4292 0.5183 33 1 2.6129 8.6417 0.2476 34 1 5.7436 3.2165 -2.1384 35 1 7.2756 3.1363 -1.2361 36 1 6.1989 1.7196 -1.2895 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601932252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:16 Heat of formation + Delta-G solvation = -12.801678 kcal Electronic energy + Delta-G solvation = -16948.415949 eV Core-core repulsion = 14239.951047 eV Total energy + Delta-G solvation = -2708.464902 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.78088 -37.08267 -35.66911 -34.16738 -32.52351 -31.23189 -29.57492 -26.71176 -25.13152 -24.14378 -22.53051 -21.19866 -20.27120 -18.79238 -17.23772 -15.95118 -15.81365 -15.40606 -14.82234 -14.37026 -13.82191 -13.71694 -13.55432 -13.50496 -12.95952 -12.57423 -12.21675 -12.15631 -11.91548 -11.67586 -11.49589 -11.28875 -11.23392 -11.02073 -10.93074 -10.69059 -10.57616 -10.16463 -10.08051 -9.12668 -9.03594 -8.46601 -7.77435 -6.47848 -4.20748 2.03993 3.15365 3.32052 3.41370 3.43839 3.62407 4.14020 4.27223 4.48476 4.92351 4.95315 4.96237 5.11011 5.17103 5.28111 5.34833 5.48354 5.50335 5.69057 5.72023 5.79179 5.81091 5.87374 5.91166 6.11128 6.15712 6.26476 6.35297 6.44868 6.79735 7.01227 7.15186 7.85901 8.27413 8.37246 8.59185 8.71499 9.47752 10.89735 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019364 B = 0.006844 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.631620 B = 4090.149701 C = 4964.388343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.118 4.118 4 C -0.034 4.034 5 C 0.054 3.946 6 N -0.210 5.210 7 N -0.440 5.440 8 C 0.257 3.743 9 C -0.611 4.611 10 H 0.053 0.947 11 C 0.023 3.977 12 N -0.905 5.905 13 Si 1.074 2.926 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.287 1.287 17 C 0.494 3.506 18 O -0.505 6.505 19 C -0.143 4.143 20 H 0.123 0.877 21 C -0.119 4.119 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.268 0.732 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -18.822 1.352 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.073 4.073 5 C -0.140 4.140 6 N -0.016 5.016 7 N -0.259 5.259 8 C 0.139 3.861 9 C -0.649 4.649 10 H 0.071 0.929 11 C -0.181 4.181 12 N -0.541 5.541 13 Si 0.901 3.099 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.213 1.213 17 C 0.280 3.720 18 O -0.379 6.379 19 C -0.167 4.167 20 H 0.141 0.859 21 C -0.178 4.178 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.299 -16.468 0.446 16.476 hybrid contribution 1.335 -1.385 0.958 2.149 sum 1.036 -17.852 1.404 17.937 Atomic orbital electron populations 1.21766 0.95912 1.01217 1.02181 1.21532 0.96011 0.96806 1.01723 1.21524 0.93691 0.96459 1.03865 1.20079 0.96383 0.87649 1.03154 1.25111 0.91581 0.95746 1.01535 1.74524 1.24662 0.92657 1.09780 1.50156 1.03845 1.05357 1.66516 1.19471 0.94277 0.73318 0.99005 1.22184 1.47321 1.04031 0.91407 0.92884 1.25866 0.93209 0.92732 1.06332 1.70818 1.44724 1.38442 1.00073 0.83469 0.76607 0.76339 0.73438 1.20433 1.21274 1.21295 1.21162 0.83826 0.90253 0.76777 1.90706 1.41846 1.55530 1.49812 1.21721 0.96576 0.95460 1.02894 0.85939 1.21421 1.00405 1.01095 0.94875 0.92588 0.93063 0.92681 0.92085 0.92154 0.91217 0.90996 0.89528 0.89637 0.94251 0.94489 0.92225 0.92052 0.91257 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.31 4.72 -26.74 -0.13 -1.43 16 4 C -0.03 -0.35 5.82 -27.89 -0.16 -0.51 16 5 C 0.05 0.83 6.62 -78.73 -0.52 0.31 16 6 N -0.21 -4.25 11.33 35.53 0.40 -3.85 16 7 N -0.44 -10.54 3.52 -61.06 -0.22 -10.76 16 8 C 0.26 7.07 5.30 -5.19 -0.03 7.05 16 9 C -0.61 -18.17 9.39 -34.44 -0.32 -18.49 16 10 H 0.05 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.02 0.69 5.46 -17.82 -0.10 0.59 16 12 N -0.91 -27.80 13.65 55.43 0.76 -27.05 16 13 Si 1.07 25.95 29.90 -169.99 -5.08 20.87 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.49 11.10 7.75 -10.42 -0.08 11.02 16 18 O -0.51 -12.99 17.82 5.54 0.10 -12.89 16 19 C -0.14 -2.26 3.63 -92.08 -0.33 -2.59 16 20 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 21 C -0.12 -1.58 9.29 37.16 0.35 -1.24 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 1.15 7.91 -51.93 -0.41 0.74 16 32 H 0.04 1.03 8.01 -51.93 -0.42 0.61 16 33 H 0.27 8.14 7.22 -40.82 -0.29 7.84 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -34.36 308.17 -6.34 -40.70 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -5.82 Total: -4.19 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -1.12 Total: -7.49 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.94 Total: -41.65 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.10 Total: -12.89 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.36 -6.34 -40.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.896 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds