Wall clock time and date at job start Sun Mar 29 2020 22:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47357 * 2 1 4 4 C 1.52990 * 109.47162 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47173 * 180.02562 * 4 3 2 6 6 N 1.27563 * 126.41324 * 0.02654 * 5 4 3 7 7 N 1.39154 * 113.16127 * 179.97438 * 6 5 4 8 8 C 1.46506 * 124.43563 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47006 * 270.01862 * 8 7 6 10 10 H 1.08005 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00046 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.34949 * 111.12371 * 0.25993 * 7 6 5 18 18 O 1.21304 * 127.50443 * 179.70944 * 17 7 6 19 19 C 1.51435 * 126.41498 * 179.97438 * 5 4 3 20 20 H 1.08992 * 110.61414 * 298.70666 * 19 5 4 21 21 C 1.53003 * 110.61034 * 61.52616 * 19 5 4 22 22 H 1.09003 * 109.47217 * 60.00100 * 1 2 3 23 23 H 1.08994 * 109.47477 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47542 * 300.00436 * 1 2 3 25 25 H 1.08995 * 109.46933 * 239.99987 * 2 1 3 26 26 H 1.08998 * 109.46863 * 120.00194 * 2 1 3 27 27 H 1.09005 * 109.46820 * 59.99393 * 3 2 1 28 28 H 1.09003 * 109.46875 * 300.00109 * 3 2 1 29 29 H 1.09000 * 109.47520 * 60.00480 * 4 3 2 30 30 H 1.09003 * 109.47438 * 299.99916 * 4 3 2 31 31 H 1.09001 * 109.47068 * 150.02526 * 8 7 6 32 32 H 1.08993 * 109.47068 * 30.01980 * 8 7 6 33 33 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 34 34 H 1.09000 * 109.46971 * 59.99317 * 21 19 5 35 35 H 1.09000 * 109.47455 * 179.97438 * 21 19 5 36 36 H 1.09007 * 109.46767 * 299.99764 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 7 3.3570 3.9194 0.0018 7 7 4.1093 5.0901 0.0029 8 6 3.5406 6.4403 0.0041 9 6 3.3452 6.9043 -1.4162 10 1 3.6170 6.2580 -2.2377 11 6 2.8185 8.1536 -1.6670 12 7 2.4871 8.9404 -0.6667 13 14 2.5756 8.7285 -3.4276 14 1 1.9993 10.0972 -3.4264 15 1 1.6501 7.8019 -4.1278 16 1 3.8847 8.7438 -4.1285 17 6 5.4312 4.8187 -0.0026 18 8 6.3481 5.6128 -0.0081 19 6 5.5210 3.3045 0.0026 20 1 6.0301 2.9475 0.8977 21 6 6.2363 2.8085 -1.2558 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9285 -0.8891 30 1 3.9330 0.9287 0.8909 31 1 4.2200 7.1201 0.5182 32 1 2.5796 6.4292 0.5183 33 1 2.6129 8.6417 0.2476 34 1 5.7436 3.2165 -2.1384 35 1 7.2756 3.1363 -1.2361 36 1 6.1989 1.7196 -1.2895 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601932252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:16 Heat of formation + Delta-G solvation = -36.034895 kcal Electronic energy + Delta-G solvation = -16949.423417 eV Core-core repulsion = 14239.951047 eV Total energy + Delta-G solvation = -2709.472370 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.34114 -38.70167 -36.84619 -35.97154 -34.23516 -32.43271 -30.95920 -28.54681 -26.40068 -25.68648 -24.21122 -22.12564 -21.65790 -20.30070 -19.34954 -17.63957 -17.37103 -16.37336 -16.34114 -15.86612 -15.69145 -15.11332 -14.78748 -14.57979 -14.40054 -13.97581 -13.79012 -13.50877 -13.28156 -13.17284 -12.96885 -12.75703 -12.61165 -12.13342 -12.11544 -11.99148 -11.73317 -11.53206 -11.35494 -11.18845 -10.77081 -10.59093 -9.62241 -8.85085 -6.62106 0.64996 1.42591 1.50614 1.52744 1.67791 1.74323 2.45103 2.78468 2.95745 2.99452 3.75591 3.99088 4.10702 4.19405 4.22306 4.39170 4.49112 4.58013 4.60417 4.71053 4.74658 4.79261 4.91152 5.05242 5.08634 5.11926 5.19062 5.22464 5.37272 5.48208 5.50084 5.57399 5.62780 5.92163 6.26839 6.70691 6.94867 7.17177 8.50391 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019364 B = 0.006844 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.631620 B = 4090.149701 C = 4964.388343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.115 4.115 3 C -0.118 4.118 4 C -0.033 4.033 5 C 0.101 3.899 6 N -0.268 5.268 7 N -0.462 5.462 8 C 0.269 3.731 9 C -0.626 4.626 10 H 0.040 0.960 11 C -0.024 4.024 12 N -0.922 5.922 13 Si 1.122 2.878 14 H -0.271 1.271 15 H -0.265 1.265 16 H -0.274 1.274 17 C 0.469 3.531 18 O -0.558 6.558 19 C -0.130 4.130 20 H 0.164 0.836 21 C -0.115 4.115 22 H 0.043 0.957 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.009 0.991 32 H 0.023 0.977 33 H 0.256 0.744 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.252 -22.547 0.448 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.152 4.152 3 C -0.156 4.156 4 C -0.071 4.071 5 C -0.092 4.092 6 N -0.074 5.074 7 N -0.279 5.279 8 C 0.149 3.851 9 C -0.664 4.664 10 H 0.059 0.941 11 C -0.223 4.223 12 N -0.557 5.557 13 Si 0.942 3.058 14 H -0.195 1.195 15 H -0.190 1.190 16 H -0.200 1.200 17 C 0.258 3.742 18 O -0.436 6.436 19 C -0.153 4.153 20 H 0.181 0.819 21 C -0.173 4.173 22 H 0.062 0.938 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.027 0.973 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.231 -20.247 -0.435 20.253 hybrid contribution 1.164 -0.395 1.312 1.798 sum 1.395 -20.642 0.877 20.708 Atomic orbital electron populations 1.21809 0.96616 1.01919 1.01206 1.21489 0.95406 0.94903 1.03447 1.21497 0.94556 0.97953 1.01622 1.20516 0.95578 0.84159 1.06882 1.26260 0.91164 0.96821 0.94970 1.74646 1.24864 0.92482 1.15384 1.50062 1.04935 1.05493 1.67414 1.18908 0.92884 0.75845 0.97511 1.22410 1.47625 1.04402 0.92008 0.94120 1.27507 0.92084 0.92827 1.09920 1.70931 1.45939 1.38866 0.99999 0.82895 0.77594 0.76661 0.68699 1.19550 1.19023 1.19984 1.22401 0.82702 0.93462 0.75648 1.90649 1.42901 1.57716 1.52332 1.21875 0.97427 0.89858 1.06185 0.81863 1.21522 0.99625 1.04291 0.91891 0.93799 0.91488 0.93562 0.90433 0.90176 0.93280 0.93756 0.85742 0.85315 0.97294 0.95918 0.93480 0.94530 0.91075 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.91 71.98 0.71 -1.74 16 2 C -0.12 -1.53 5.93 30.59 0.18 -1.35 16 3 C -0.12 -2.33 4.72 30.59 0.14 -2.19 16 4 C -0.03 -0.52 5.82 29.85 0.17 -0.34 16 5 C 0.10 2.83 6.62 46.83 0.31 3.14 16 6 N -0.27 -10.95 11.33 -40.85 -0.46 -11.42 16 7 N -0.46 -23.13 3.52 -465.38 -1.64 -24.77 16 8 C 0.27 15.83 5.30 85.63 0.45 16.28 16 9 C -0.63 -39.01 9.39 25.60 0.24 -38.77 16 10 H 0.04 2.57 7.81 -2.91 -0.02 2.54 16 11 C -0.02 -1.48 5.46 84.65 0.46 -1.02 16 12 N -0.92 -58.66 13.65 21.45 0.29 -58.37 16 13 Si 1.12 52.64 29.90 68.60 2.05 54.69 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 C 0.47 21.60 7.75 87.94 0.68 22.28 16 18 O -0.56 -30.05 17.82 -3.10 -0.06 -30.11 16 19 C -0.13 -3.76 3.63 -11.74 -0.04 -3.80 16 20 H 0.16 3.52 8.14 -2.39 -0.02 3.50 16 21 C -0.12 -2.61 9.29 71.98 0.67 -1.94 16 22 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.01 0.58 7.91 -2.39 -0.02 0.56 16 32 H 0.02 1.37 8.01 -2.39 -0.02 1.35 16 33 H 0.26 16.48 7.22 -92.71 -0.67 15.81 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.13 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -82.32 308.17 5.31 -77.01 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.14 Total: 2.41 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 3.99 Total: -9.45 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -1.81 Total: -94.55 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.06 Total: -30.11 kcal Atomic # 14 Polarization: 52.64 SS G_CDS: 2.05 Total: 54.69 kcal Total: -82.32 5.31 -77.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.973 kcal (2) G-P(sol) polarization free energy of solvation -82.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds