Wall clock time and date at job start Sun Mar 29 2020 22:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47304 * 2 1 4 4 H 1.09003 * 109.46831 * 55.00277 * 3 2 1 5 5 C 1.52997 * 109.47001 * 174.99817 * 3 2 1 6 6 N 1.46495 * 109.47247 * 295.00438 * 3 2 1 7 7 N 1.39156 * 124.43609 * 299.96934 * 6 3 2 8 8 C 1.27565 * 113.16149 * 180.02562 * 7 6 3 9 9 C 1.50706 * 126.41692 * 179.97438 * 8 7 6 10 10 C 1.51442 * 107.17128 * 0.22964 * 8 7 6 11 11 H 1.09000 * 110.60622 * 118.28080 * 10 8 7 12 12 C 1.52995 * 110.61070 * 241.25813 * 10 8 7 13 13 C 1.50701 * 109.47215 * 184.99836 * 12 10 8 14 14 H 1.07995 * 119.99748 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99968 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00083 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99851 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47430 * 59.99780 * 17 15 13 19 19 H 1.48503 * 109.47270 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47374 * 299.99667 * 17 15 13 21 21 C 1.34949 * 124.44335 * 119.99971 * 6 3 2 22 22 O 1.21305 * 127.49528 * 359.96951 * 21 6 3 23 23 H 1.08996 * 109.47038 * 299.99751 * 1 2 3 24 24 H 1.08997 * 109.46986 * 59.99999 * 1 2 3 25 25 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46955 * 240.00453 * 2 1 3 27 27 H 1.08997 * 109.47378 * 120.00670 * 2 1 3 28 28 H 1.09003 * 109.47501 * 300.00536 * 5 3 2 29 29 H 1.09003 * 109.46952 * 60.00534 * 5 3 2 30 30 H 1.09003 * 109.47329 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.46953 * 0.02572 * 9 8 7 32 32 H 1.09000 * 109.47318 * 120.02170 * 9 8 7 33 33 H 1.09000 * 109.47161 * 240.02800 * 9 8 7 34 34 H 1.09006 * 109.46825 * 304.99992 * 12 10 8 35 35 H 1.08993 * 109.47229 * 64.99372 * 12 10 8 36 36 H 0.97000 * 120.00275 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4442 0.1258 6 7 1.6525 2.0975 -1.2517 7 7 2.0374 1.6663 -2.5175 8 6 1.5780 2.3962 -3.4575 9 6 1.8079 2.2028 -4.9343 10 6 0.7633 3.4971 -2.8112 11 1 1.1885 4.4742 -3.0408 12 6 -0.6964 3.4234 -3.2635 13 6 -1.4555 4.5991 -2.7044 14 1 -0.9477 5.3259 -2.0878 15 6 -2.7986 4.7463 -2.9793 16 7 -3.4170 3.8609 -3.7299 17 14 -3.7393 6.2039 -2.2870 18 1 -3.1316 7.4655 -2.7814 19 1 -5.1562 6.1324 -2.7259 20 1 -3.6781 6.1732 -0.8036 21 6 0.8758 3.1985 -1.3284 22 8 0.3794 3.8172 -0.4107 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8533 0.9568 1.0571 29 1 3.9995 0.9052 -0.7161 30 1 3.9284 2.4719 0.1253 31 1 2.4387 1.3279 -5.0922 32 1 0.8509 2.0558 -5.4349 33 1 2.3006 3.0846 -5.3438 34 1 -0.7409 3.4467 -4.3524 35 1 -1.1426 2.4973 -2.9014 36 1 -4.3618 3.9646 -3.9236 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601953926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:49 Heat of formation + Delta-G solvation = -23.245470 kcal Electronic energy + Delta-G solvation = -17612.189715 eV Core-core repulsion = 14903.271937 eV Total energy + Delta-G solvation = -2708.917779 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.29693 -38.42692 -37.46426 -35.37177 -33.25769 -32.13331 -31.08204 -28.85488 -27.79512 -24.99493 -24.23727 -22.41273 -21.69360 -20.03430 -18.48168 -17.90012 -17.17906 -16.58357 -16.03489 -15.80755 -15.17852 -14.86657 -14.60450 -14.50434 -14.29839 -14.10688 -13.53687 -13.39546 -13.30828 -13.17457 -12.86498 -12.78531 -12.66667 -12.60542 -12.23407 -12.09154 -11.95626 -11.68266 -11.56409 -11.20001 -10.66004 -10.40236 -9.52105 -8.24065 -6.31807 0.72421 1.35257 1.38881 1.46355 1.48124 1.69173 2.38690 3.00687 3.11650 3.32934 3.71680 3.97697 3.99840 4.08765 4.31104 4.33133 4.52858 4.59390 4.63083 4.71111 4.82540 4.87852 4.90857 4.93957 5.04464 5.12279 5.20015 5.27573 5.33324 5.36781 5.45189 5.65578 5.73376 6.13779 6.75162 6.79081 6.97646 7.35678 8.86953 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.007775 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.253246 B = 3600.641666 C = 4014.766966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.150 3.850 4 H 0.082 0.918 5 C -0.145 4.145 6 N -0.469 5.469 7 N -0.252 5.252 8 C 0.110 3.890 9 C -0.072 4.072 10 C -0.138 4.138 11 H 0.127 0.873 12 C 0.070 3.930 13 C -0.533 4.533 14 H 0.050 0.950 15 C 0.010 3.990 16 N -0.926 5.926 17 Si 0.954 3.046 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.284 1.284 21 C 0.495 3.505 22 O -0.538 6.538 23 H 0.046 0.954 24 H 0.012 0.988 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.038 0.962 35 H -0.018 1.018 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.553 -7.341 1.351 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C 0.049 3.951 4 H 0.100 0.900 5 C -0.203 4.203 6 N -0.289 5.289 7 N -0.058 5.058 8 C -0.083 4.083 9 C -0.130 4.130 10 C -0.161 4.161 11 H 0.145 0.855 12 C 0.032 3.968 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.779 3.221 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.210 1.210 21 C 0.283 3.717 22 O -0.413 6.413 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.056 0.944 35 H 0.001 0.999 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.705 -7.901 2.247 15.978 hybrid contribution -1.587 1.562 0.462 2.274 sum 12.118 -6.339 2.710 13.942 Atomic orbital electron populations 1.21718 0.97126 1.01888 0.99979 1.21831 0.94852 0.94556 1.04390 1.21420 0.97541 0.94335 0.81828 0.90034 1.22015 0.91932 1.02191 1.04125 1.50023 1.47520 1.26511 1.04849 1.74464 1.19486 1.22333 0.89506 1.25970 0.92384 0.91632 0.98278 1.20526 1.04355 1.05464 0.82689 1.21958 1.00732 1.01212 0.92230 0.85513 1.18560 0.86056 0.95261 0.96894 1.21438 0.95163 1.09516 1.30958 0.93158 1.25744 0.98536 0.99184 0.95419 1.70030 1.10957 1.36820 1.38811 0.85667 0.77829 0.80231 0.78356 1.18587 1.20040 1.20958 1.21663 0.77119 0.80760 0.92130 1.90652 1.49176 1.55298 1.46158 0.93488 0.96849 0.90635 0.90705 0.87311 0.88312 0.91146 0.93554 0.88081 0.89263 0.87200 0.94416 0.99921 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.80 71.98 0.71 -3.95 16 2 C -0.12 -3.01 5.51 30.60 0.17 -2.84 16 3 C 0.15 4.47 2.99 44.99 0.13 4.61 16 4 H 0.08 2.68 7.68 -2.39 -0.02 2.66 16 5 C -0.14 -3.24 9.41 71.98 0.68 -2.57 16 6 N -0.47 -17.49 2.69 -441.17 -1.19 -18.68 16 7 N -0.25 -8.48 11.72 -40.84 -0.48 -8.95 16 8 C 0.11 3.62 6.93 46.83 0.32 3.94 16 9 C -0.07 -1.60 10.47 71.24 0.75 -0.85 16 10 C -0.14 -5.85 2.97 -11.74 -0.03 -5.89 16 11 H 0.13 5.13 8.14 -2.39 -0.02 5.11 16 12 C 0.07 3.66 4.48 29.85 0.13 3.80 16 13 C -0.53 -31.28 8.44 25.60 0.22 -31.07 16 14 H 0.05 3.02 7.43 -2.91 -0.02 3.00 16 15 C 0.01 0.56 5.46 84.65 0.46 1.02 16 16 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 17 Si 0.95 46.44 29.54 68.60 2.03 48.46 16 18 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 21 C 0.49 22.76 7.59 87.94 0.67 23.43 16 22 O -0.54 -28.84 16.78 -3.11 -0.05 -28.90 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.01 0.50 7.75 -2.39 -0.02 0.48 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.07 1.91 8.08 -2.38 -0.02 1.89 16 27 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 2.09 8.05 -2.39 -0.02 2.07 16 33 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.92 8.03 -2.38 -0.02 1.90 16 35 H -0.02 -1.03 8.12 -2.39 -0.02 -1.05 16 36 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -73.18 306.11 5.83 -67.34 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.04 Total: 6.82 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 4.20 Total: -10.37 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -1.38 Total: -83.36 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.90 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -73.18 5.83 -67.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601953926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.097 kcal (2) G-P(sol) polarization free energy of solvation -73.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds