Wall clock time and date at job start Sun Mar 29 2020 22:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00173 * 2 1 3 5 5 H 1.08001 * 119.99776 * 240.00499 * 4 2 1 6 6 C 1.37877 * 120.00001 * 59.99531 * 4 2 1 7 7 N 1.31511 * 120.00114 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46979 * 120.00420 * 8 6 4 11 11 H 1.48498 * 109.46942 * 240.00334 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 N 1.46499 * 109.46840 * 299.99500 * 12 2 1 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 2 15 15 O 1.21590 * 120.00297 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99768 * 180.02562 * 14 13 12 17 17 C 1.46976 * 127.25386 * 359.68446 * 16 14 13 18 18 C 1.50591 * 107.13349 * 179.91225 * 17 16 14 19 19 C 1.30398 * 110.11815 * 0.36820 * 18 17 16 20 20 C 1.46980 * 127.24990 * 179.97438 * 16 14 13 21 21 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 22 22 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 23 23 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 26 26 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 27 27 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 29 29 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 30 30 H 0.97000 * 120.00420 * 0.02562 * 13 12 2 31 31 H 1.08996 * 109.90898 * 299.41194 * 17 16 14 32 32 H 1.09002 * 109.90825 * 60.66457 * 17 16 14 33 33 H 1.08000 * 124.94069 * 180.14786 * 18 17 16 34 34 H 1.07992 * 124.94174 * 179.75134 * 19 18 17 35 35 H 1.08998 * 109.90784 * 299.34502 * 20 16 14 36 36 H 1.09003 * 109.90508 * 60.41313 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1473 -2.2862 -3.6039 10 1 1.1676 -1.5865 -4.8166 11 1 3.1471 -0.1857 -4.8161 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8779 -0.4910 3.6695 15 8 2.5776 -1.4790 3.7810 16 7 1.4282 0.1442 4.7700 17 6 0.5846 1.3466 4.8210 18 6 0.3532 1.6648 6.2746 19 6 0.9681 0.7957 7.0274 20 6 1.6831 -0.2165 6.1718 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 0.7087 1.1614 -3.4844 28 1 1.6767 -1.7490 1.2492 29 1 3.1301 -0.7209 1.2494 30 1 0.9939 0.7578 2.3565 31 1 1.0936 2.1781 4.3337 32 1 -0.3687 1.1524 4.3293 33 1 -0.2336 2.4945 6.6404 34 1 0.9652 0.8010 8.1073 35 1 1.2950 -1.2146 6.3748 36 1 2.7538 -0.1867 6.3739 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602330436.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:14 Heat of formation + Delta-G solvation = -2.619095 kcal Electronic energy + Delta-G solvation = -17251.288752 eV Core-core repulsion = 14543.265399 eV Total energy + Delta-G solvation = -2708.023352 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.13851 -37.94224 -36.21806 -33.29803 -31.85970 -30.55700 -28.66476 -25.70826 -25.68041 -25.07561 -23.45215 -19.82067 -19.70927 -18.78612 -17.98962 -16.03019 -15.90313 -15.32219 -14.94840 -14.48933 -14.09125 -13.44881 -13.11360 -12.88814 -12.67540 -12.65377 -12.54351 -12.16350 -11.48739 -11.37890 -11.18523 -10.86718 -10.64156 -10.37411 -10.19613 -9.82607 -9.75863 -9.61394 -9.30095 -8.76622 -8.54626 -8.37577 -8.06297 -6.00668 -4.10400 1.91064 2.85749 3.28641 3.37187 3.42437 3.60044 4.29809 4.42864 4.50042 4.73354 5.26282 5.26767 5.42105 5.43596 5.59875 5.61436 6.08834 6.11417 6.29525 6.38181 6.52178 6.57889 6.81337 6.84512 6.95093 7.04881 7.10687 7.35925 7.43655 7.57542 7.71587 8.02611 8.14004 8.38703 8.43786 8.89514 9.02450 9.55338 11.00893 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052501 B = 0.005299 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.199555 B = 5282.810009 C = 5614.274457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.729 5.729 14 C 0.724 3.276 15 O -0.594 6.594 16 N -0.645 5.645 17 C 0.121 3.879 18 C -0.167 4.167 19 C -0.167 4.167 20 C 0.148 3.852 21 H 0.005 0.995 22 H 0.085 0.915 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.085 0.915 26 H 0.005 0.995 27 H 0.259 0.741 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.394 0.606 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.074 0.926 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 3.987 14.521 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.383 5.383 14 C 0.426 3.574 15 O -0.473 6.473 16 N -0.386 5.386 17 C -0.003 4.003 18 C -0.185 4.185 19 C -0.185 4.185 20 C 0.024 3.976 21 H 0.024 0.976 22 H 0.104 0.896 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.104 0.896 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.229 0.771 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.092 0.908 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.310 3.281 14.291 14.844 hybrid contribution -0.040 0.058 -0.793 0.797 sum -2.350 3.339 13.498 14.102 Atomic orbital electron populations 1.21817 0.97762 0.99182 0.99959 1.18380 0.92831 0.92812 0.90540 1.21816 0.98609 0.98340 0.99962 1.21025 1.31335 1.12063 0.89811 0.92318 1.24879 0.94878 0.94931 0.98851 1.69814 1.36815 1.22807 1.23085 0.86511 0.78632 0.79758 0.82961 1.19734 1.21084 1.21079 1.21627 0.97956 0.95471 0.82260 1.45501 1.55490 1.33069 1.04249 1.15367 0.80216 0.82306 0.79523 1.90894 1.43256 1.27635 1.85468 1.47262 1.55523 1.30554 1.05224 1.20774 0.95264 0.88311 0.95925 1.23240 1.00805 1.00182 0.94304 1.23329 0.98836 0.96634 0.99749 1.20465 1.00029 0.97818 0.79252 0.97636 0.89612 0.95415 0.95412 0.89611 0.97631 0.93092 0.92856 0.92858 0.77095 0.90662 0.90688 0.83830 0.83785 0.90837 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.69 9.35 55.43 0.52 -23.17 16 8 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.15 3.31 4.50 -4.04 -0.02 3.30 16 13 N -0.73 -13.98 4.93 -65.22 -0.32 -14.30 16 14 C 0.72 14.09 8.54 -86.91 -0.74 13.34 16 15 O -0.59 -13.75 16.75 5.29 0.09 -13.66 16 16 N -0.64 -9.84 3.37 -181.53 -0.61 -10.45 16 17 C 0.12 1.39 6.33 -4.99 -0.03 1.36 16 18 C -0.17 -1.48 10.87 -35.91 -0.39 -1.87 16 19 C -0.17 -1.50 10.87 -35.91 -0.39 -1.89 16 20 C 0.15 1.85 7.00 -4.99 -0.03 1.81 16 21 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 22 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 26 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 27 H 0.26 6.66 8.31 -40.82 -0.34 6.33 16 28 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.39 6.85 5.26 -40.82 -0.21 6.64 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 291.62 15.07 4.39 4.39 Total: -1.00 -29.98 291.62 -7.73 -37.71 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.33 Total: 3.67 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -1.45 Total: 0.00 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.42 Total: -47.92 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.98 -7.73 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602330436.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.092 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds