Wall clock time and date at job start Sun Mar 29 2020 22:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00173 * 2 1 3 5 5 H 1.08001 * 119.99776 * 240.00499 * 4 2 1 6 6 C 1.37877 * 120.00001 * 59.99531 * 4 2 1 7 7 N 1.31511 * 120.00114 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46979 * 120.00420 * 8 6 4 11 11 H 1.48498 * 109.46942 * 240.00334 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 N 1.46499 * 109.46840 * 299.99500 * 12 2 1 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 2 15 15 O 1.21590 * 120.00297 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99768 * 180.02562 * 14 13 12 17 17 C 1.46976 * 127.25386 * 359.68446 * 16 14 13 18 18 C 1.50591 * 107.13349 * 179.91225 * 17 16 14 19 19 C 1.30398 * 110.11815 * 0.36820 * 18 17 16 20 20 C 1.46980 * 127.24990 * 179.97438 * 16 14 13 21 21 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 22 22 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 23 23 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 26 26 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 27 27 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 29 29 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 30 30 H 0.97000 * 120.00420 * 0.02562 * 13 12 2 31 31 H 1.08996 * 109.90898 * 299.41194 * 17 16 14 32 32 H 1.09002 * 109.90825 * 60.66457 * 17 16 14 33 33 H 1.08000 * 124.94069 * 180.14786 * 18 17 16 34 34 H 1.07992 * 124.94174 * 179.75134 * 19 18 17 35 35 H 1.08998 * 109.90784 * 299.34502 * 20 16 14 36 36 H 1.09003 * 109.90508 * 60.41313 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1473 -2.2862 -3.6039 10 1 1.1676 -1.5865 -4.8166 11 1 3.1471 -0.1857 -4.8161 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8779 -0.4910 3.6695 15 8 2.5776 -1.4790 3.7810 16 7 1.4282 0.1442 4.7700 17 6 0.5846 1.3466 4.8210 18 6 0.3532 1.6648 6.2746 19 6 0.9681 0.7957 7.0274 20 6 1.6831 -0.2165 6.1718 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 0.7087 1.1614 -3.4844 28 1 1.6767 -1.7490 1.2492 29 1 3.1301 -0.7209 1.2494 30 1 0.9939 0.7578 2.3565 31 1 1.0936 2.1781 4.3337 32 1 -0.3687 1.1524 4.3293 33 1 -0.2336 2.4945 6.6404 34 1 0.9652 0.8010 8.1073 35 1 1.2950 -1.2146 6.3748 36 1 2.7538 -0.1867 6.3739 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602330436.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:13 Heat of formation + Delta-G solvation = -21.146945 kcal Electronic energy + Delta-G solvation = -17252.092179 eV Core-core repulsion = 14543.265399 eV Total energy + Delta-G solvation = -2708.826780 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.44591 -39.24590 -37.97579 -35.06029 -33.27059 -32.15506 -29.61570 -27.57743 -27.48790 -26.84465 -24.74087 -21.26122 -20.75510 -20.37799 -19.33753 -17.82544 -17.24922 -16.83256 -16.66362 -15.80797 -15.56447 -14.92910 -14.84702 -14.39185 -14.02646 -13.92115 -13.82234 -13.28032 -13.21488 -13.10328 -12.70382 -12.56865 -12.27993 -12.26584 -12.13478 -11.50122 -11.48992 -11.18777 -10.71008 -10.70222 -10.40032 -10.02720 -9.27924 -8.02254 -6.17827 1.23680 1.42325 1.45991 1.53415 1.58478 2.07298 2.46413 3.06509 3.21518 3.68278 3.82590 4.37201 4.42677 4.49956 4.51456 4.61209 4.61412 4.69133 4.91863 4.96202 5.04118 5.06648 5.18396 5.19732 5.35260 5.41119 5.57813 5.66017 5.67620 5.86602 6.04218 6.13592 6.20547 6.43224 6.85947 6.95780 7.49787 7.50937 8.97184 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052501 B = 0.005299 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.199555 B = 5282.810009 C = 5614.274457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.167 3.833 13 N -0.721 5.721 14 C 0.719 3.281 15 O -0.639 6.639 16 N -0.646 5.646 17 C 0.107 3.893 18 C -0.157 4.157 19 C -0.162 4.162 20 C 0.135 3.865 21 H 0.034 0.966 22 H 0.064 0.936 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.261 0.739 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.404 0.596 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.067 0.933 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 5.307 15.949 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.566 4.566 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.042 3.958 13 N -0.377 5.377 14 C 0.421 3.579 15 O -0.521 6.521 16 N -0.385 5.385 17 C -0.015 4.015 18 C -0.175 4.175 19 C -0.180 4.180 20 C 0.012 3.988 21 H 0.053 0.947 22 H 0.083 0.917 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.241 0.759 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.198 0.802 34 H 0.196 0.804 35 H 0.085 0.915 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.277 4.649 15.757 16.752 hybrid contribution 0.244 -0.343 -1.196 1.268 sum -3.033 4.306 14.561 15.484 Atomic orbital electron populations 1.21654 0.97027 0.98681 1.00290 1.18379 0.93352 0.93110 0.90113 1.21653 0.97945 0.97766 1.00293 1.21275 1.31733 1.12172 0.91462 0.93721 1.25445 0.95102 0.95589 1.00939 1.69907 1.37006 1.23272 1.23594 0.85683 0.78133 0.78705 0.80136 1.20072 1.20661 1.20655 1.21193 0.96783 0.94742 0.83039 1.45195 1.55674 1.33196 1.03589 1.15476 0.80041 0.82097 0.80302 1.90854 1.45264 1.29726 1.86269 1.47273 1.54898 1.31154 1.05126 1.21113 0.94924 0.86849 0.98598 1.23449 1.00908 1.01042 0.92101 1.23438 0.98330 0.95290 1.00932 1.20731 1.00439 0.99119 0.78464 0.94738 0.91690 0.96290 0.96289 0.91691 0.94730 0.92979 0.94540 0.94543 0.75858 0.89949 0.89975 0.80234 0.80362 0.91497 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 2 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 4 C -0.53 -28.30 8.01 25.60 0.21 -28.10 16 5 H 0.04 2.46 7.74 -2.91 -0.02 2.43 16 6 C 0.03 1.54 5.15 84.66 0.44 1.97 16 7 N -0.90 -47.95 9.35 21.45 0.20 -47.75 16 8 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 C 0.17 7.48 4.50 86.38 0.39 7.87 16 13 N -0.72 -27.26 4.93 -478.52 -2.36 -29.62 16 14 C 0.72 27.90 8.54 179.05 1.53 29.43 16 15 O -0.64 -30.23 16.75 -4.00 -0.07 -30.29 16 16 N -0.65 -18.92 3.37 -846.48 -2.85 -21.78 16 17 C 0.11 2.18 6.33 85.51 0.54 2.73 16 18 C -0.16 -2.15 10.87 26.23 0.29 -1.86 16 19 C -0.16 -2.35 10.87 26.23 0.29 -2.06 16 20 C 0.14 3.21 7.00 85.51 0.60 3.81 16 21 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 22 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 23 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 3.23 6.07 -2.38 -0.01 3.21 16 26 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 27 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.40 13.36 5.26 -92.71 -0.49 12.87 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -65.31 291.62 2.93 -62.38 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.58 Total: 15.58 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 5.41 Total: 6.62 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -5.01 Total: -99.15 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.07 Total: -30.29 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.31 2.93 -62.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602330436.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.233 kcal (2) G-P(sol) polarization free energy of solvation -65.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds