Wall clock time and date at job start Sun Mar 29 2020 22:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35448 * 126.77210 * 2 1 4 4 C 1.41385 * 103.98355 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.80044 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47119 * 94.99918 * 5 4 3 7 7 C 1.46903 * 111.00043 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47368 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46617 * 55.00168 * 8 7 6 10 10 C 1.53005 * 109.47107 * 295.00343 * 8 7 6 11 11 C 1.53002 * 109.47329 * 174.99975 * 8 7 6 12 12 C 1.50696 * 109.46919 * 185.00033 * 11 8 7 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00183 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 299.99939 * 16 14 12 20 20 N 1.30174 * 106.39300 * 0.26116 * 4 3 2 21 21 O 1.20919 * 111.60360 * 359.53736 * 20 4 3 22 22 H 1.08991 * 109.47527 * 90.00221 * 1 2 3 23 23 H 1.09002 * 109.46783 * 209.99995 * 1 2 3 24 24 H 1.09001 * 109.46907 * 329.99565 * 1 2 3 25 25 H 1.07996 * 128.01305 * 359.94630 * 3 2 1 26 26 H 1.09006 * 109.47218 * 334.99737 * 5 4 3 27 27 H 1.09009 * 109.47117 * 215.00104 * 5 4 3 28 28 H 1.00898 * 111.00104 * 56.04644 * 6 5 4 29 29 H 1.09008 * 109.46872 * 60.00082 * 7 6 5 30 30 H 1.09005 * 109.47368 * 300.00424 * 7 6 5 31 31 H 1.08997 * 109.46686 * 299.99929 * 10 8 7 32 32 H 1.09001 * 109.47004 * 59.99757 * 10 8 7 33 33 H 1.08997 * 109.47105 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.46497 * 65.00298 * 11 8 7 35 35 H 1.08999 * 109.46623 * 305.00362 * 11 8 7 36 36 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9210 1.3002 0.0014 6 7 5.4037 1.4437 1.3814 7 6 6.6721 2.1836 1.4212 8 6 7.1418 2.3132 2.8715 9 1 7.2017 1.3233 3.3238 10 6 6.1472 3.1725 3.6548 11 6 8.5218 2.9730 2.9038 12 6 9.0377 2.9895 4.3196 13 1 8.4408 2.5716 5.1167 14 6 10.2714 3.5390 4.5974 15 7 10.9954 4.0537 3.6276 16 14 10.9106 3.5601 6.3525 17 1 11.0162 2.1676 6.8576 18 1 12.2502 4.2004 6.3838 19 1 9.9740 4.3285 7.2113 20 7 3.4764 -0.7563 -0.0048 21 8 2.3096 -1.0735 0.0006 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 2.0345 2.1271 -0.0008 26 1 4.7631 2.2874 -0.4329 27 1 5.6608 0.7581 -0.5878 28 1 5.4964 0.5435 1.8276 29 1 6.5268 3.1770 0.9966 30 1 7.4239 1.6474 0.8419 31 1 6.0873 4.1623 3.2025 32 1 5.1640 2.7024 3.6318 33 1 6.4815 3.2644 4.6882 34 1 8.4445 3.9952 2.5333 35 1 9.2090 2.4089 2.2731 36 1 10.6634 4.0430 2.7162 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602522778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:09 Heat of formation + Delta-G solvation = 34.437473 kcal Electronic energy + Delta-G solvation = -16278.401612 eV Core-core repulsion = 13571.985153 eV Total energy + Delta-G solvation = -2706.416459 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.03056 -37.25263 -35.10702 -33.81994 -33.09150 -31.65948 -28.03529 -27.20907 -26.32196 -24.32839 -23.13011 -22.29636 -20.25632 -19.27086 -17.75402 -17.35319 -16.68557 -15.49716 -15.06462 -14.52475 -14.14604 -13.97326 -13.69048 -13.56657 -13.33934 -12.99689 -12.54787 -12.43420 -11.81111 -11.70160 -11.42324 -11.19474 -10.99204 -10.67706 -10.38311 -10.18827 -10.07543 -9.82083 -9.49625 -9.41839 -8.46369 -8.29510 -8.27726 -6.31158 -3.99148 1.33055 2.09731 2.96373 3.46476 3.48520 3.67019 4.01091 4.27121 4.52765 4.60868 4.83884 4.97169 5.04904 5.10903 5.35381 5.39538 5.45248 5.53784 5.58076 5.68995 5.80470 5.93012 6.03247 6.28320 6.41787 6.57877 6.86507 7.04515 7.10221 7.18783 7.40847 7.47716 7.60458 8.16602 8.28248 8.51813 8.93972 9.72218 11.09334 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057994 B = 0.003633 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.695750 B = 7705.199808 C = 7840.328161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.217 4.217 4 C 0.029 3.971 5 C 0.135 3.865 6 N -0.681 5.681 7 C 0.063 3.937 8 C -0.076 4.076 9 H 0.055 0.945 10 C -0.122 4.122 11 C 0.015 3.985 12 C -0.594 4.594 13 H 0.050 0.950 14 C 0.012 3.988 15 N -0.916 5.916 16 Si 1.067 2.933 17 H -0.289 1.289 18 H -0.283 1.283 19 H -0.288 1.288 20 N -0.365 5.365 21 O 0.097 5.903 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.171 0.829 26 H 0.093 0.907 27 H 0.046 0.954 28 H 0.342 0.658 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.008 0.992 35 H 0.003 0.997 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.285 -6.085 -8.430 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.239 4.239 4 C -0.130 4.130 5 C 0.005 3.995 6 N -0.313 5.313 7 C -0.065 4.065 8 C -0.095 4.095 9 H 0.074 0.926 10 C -0.179 4.179 11 C -0.023 4.023 12 C -0.632 4.632 13 H 0.068 0.932 14 C -0.191 4.191 15 N -0.553 5.553 16 Si 0.896 3.104 17 H -0.215 1.215 18 H -0.208 1.208 19 H -0.215 1.215 20 N -0.069 5.069 21 O 0.031 5.969 22 H 0.104 0.896 23 H 0.101 0.899 24 H 0.109 0.891 25 H 0.188 0.812 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.159 0.841 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.026 0.974 35 H 0.022 0.978 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.523 -6.083 -7.378 20.846 hybrid contribution -0.999 -0.341 -1.330 1.698 sum -19.522 -6.424 -8.707 22.320 Atomic orbital electron populations 1.20310 0.84105 1.04634 1.03903 1.24492 0.96357 0.86289 1.03358 1.22405 0.91249 1.00979 1.09235 1.23523 0.97569 0.89709 1.02188 1.20212 0.89114 0.98347 0.91843 1.60562 1.31923 1.24319 1.14456 1.22208 0.87542 0.97611 0.99171 1.21072 0.97202 0.99489 0.91728 0.92643 1.21578 0.97383 0.98501 1.00465 1.19246 0.90509 0.94824 0.97711 1.22035 1.05138 1.42750 0.93319 0.93199 1.25834 0.93976 0.93635 1.05645 1.70780 1.39796 1.43039 1.01647 0.83565 0.76222 0.76343 0.74273 1.21523 1.20847 1.21454 1.73845 0.96925 1.16560 1.19605 1.84804 1.11307 1.33223 1.67607 0.89583 0.89916 0.89058 0.81181 0.88862 0.93631 0.84080 0.91249 0.95528 0.94175 0.93844 0.92580 0.97418 0.97839 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.45 36.01 0.38 0.02 16 2 C -0.04 -0.40 7.49 -35.30 -0.26 -0.66 16 3 C -0.22 -2.33 11.06 -39.38 -0.44 -2.76 16 4 C 0.03 0.39 6.84 -82.10 -0.56 -0.18 16 5 C 0.13 1.79 6.27 -4.98 -0.03 1.76 16 6 N -0.68 -10.48 5.94 -115.05 -0.68 -11.17 16 7 C 0.06 1.10 5.07 -3.82 -0.02 1.08 16 8 C -0.08 -1.60 2.48 -90.62 -0.22 -1.82 16 9 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 10 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 11 C 0.01 0.38 3.76 -27.88 -0.10 0.27 16 12 C -0.59 -17.08 8.41 -34.44 -0.29 -17.37 16 13 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 14 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 15 N -0.92 -28.53 13.65 55.43 0.76 -27.78 16 16 Si 1.07 25.76 29.90 -169.99 -5.08 20.67 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 N -0.36 -5.23 12.07 33.42 0.40 -4.83 16 21 O 0.10 1.21 11.20 17.20 0.19 1.40 16 22 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 23 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.34 5.40 8.72 -39.29 -0.34 5.06 16 29 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 33 H 0.06 1.20 6.95 -51.93 -0.36 0.84 16 34 H 0.01 0.20 8.00 -51.93 -0.42 -0.21 16 35 H 0.00 0.09 8.01 -51.93 -0.42 -0.32 16 36 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -32.39 305.32 -6.76 -39.15 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.63 Total: -0.55 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -1.32 Total: -21.51 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.48 Total: -43.77 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.19 Total: 1.40 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.39 -6.76 -39.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602522778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.590 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds