Wall clock time and date at job start Sun Mar 29 2020 22:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35448 * 126.77210 * 2 1 4 4 C 1.41385 * 103.98355 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.80044 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47119 * 94.99918 * 5 4 3 7 7 C 1.46903 * 111.00043 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47368 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46617 * 55.00168 * 8 7 6 10 10 C 1.53005 * 109.47107 * 295.00343 * 8 7 6 11 11 C 1.53002 * 109.47329 * 174.99975 * 8 7 6 12 12 C 1.50696 * 109.46919 * 185.00033 * 11 8 7 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00183 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 299.99939 * 16 14 12 20 20 N 1.30174 * 106.39300 * 0.26116 * 4 3 2 21 21 O 1.20919 * 111.60360 * 359.53736 * 20 4 3 22 22 H 1.08991 * 109.47527 * 90.00221 * 1 2 3 23 23 H 1.09002 * 109.46783 * 209.99995 * 1 2 3 24 24 H 1.09001 * 109.46907 * 329.99565 * 1 2 3 25 25 H 1.07996 * 128.01305 * 359.94630 * 3 2 1 26 26 H 1.09006 * 109.47218 * 334.99737 * 5 4 3 27 27 H 1.09009 * 109.47117 * 215.00104 * 5 4 3 28 28 H 1.00898 * 111.00104 * 56.04644 * 6 5 4 29 29 H 1.09008 * 109.46872 * 60.00082 * 7 6 5 30 30 H 1.09005 * 109.47368 * 300.00424 * 7 6 5 31 31 H 1.08997 * 109.46686 * 299.99929 * 10 8 7 32 32 H 1.09001 * 109.47004 * 59.99757 * 10 8 7 33 33 H 1.08997 * 109.47105 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.46497 * 65.00298 * 11 8 7 35 35 H 1.08999 * 109.46623 * 305.00362 * 11 8 7 36 36 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9210 1.3002 0.0014 6 7 5.4037 1.4437 1.3814 7 6 6.6721 2.1836 1.4212 8 6 7.1418 2.3132 2.8715 9 1 7.2017 1.3233 3.3238 10 6 6.1472 3.1725 3.6548 11 6 8.5218 2.9730 2.9038 12 6 9.0377 2.9895 4.3196 13 1 8.4408 2.5716 5.1167 14 6 10.2714 3.5390 4.5974 15 7 10.9954 4.0537 3.6276 16 14 10.9106 3.5601 6.3525 17 1 11.0162 2.1676 6.8576 18 1 12.2502 4.2004 6.3838 19 1 9.9740 4.3285 7.2113 20 7 3.4764 -0.7563 -0.0048 21 8 2.3096 -1.0735 0.0006 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 2.0345 2.1271 -0.0008 26 1 4.7631 2.2874 -0.4329 27 1 5.6608 0.7581 -0.5878 28 1 5.4964 0.5435 1.8276 29 1 6.5268 3.1770 0.9966 30 1 7.4239 1.6474 0.8419 31 1 6.0873 4.1623 3.2025 32 1 5.1640 2.7024 3.6318 33 1 6.4815 3.2644 4.6882 34 1 8.4445 3.9952 2.5333 35 1 9.2090 2.4089 2.2731 36 1 10.6634 4.0430 2.7162 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602522778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:08 Heat of formation + Delta-G solvation = 13.374389 kcal Electronic energy + Delta-G solvation = -16279.314976 eV Core-core repulsion = 13571.985153 eV Total energy + Delta-G solvation = -2707.329823 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.93770 -38.69762 -36.56293 -34.98953 -34.31008 -33.25729 -28.89652 -28.58183 -27.97854 -25.98067 -24.24412 -23.92949 -21.42321 -20.69924 -18.89318 -18.65604 -18.23813 -16.76333 -16.27508 -15.96229 -15.57926 -15.43701 -15.11646 -14.65493 -14.15290 -13.93925 -13.82598 -13.53510 -13.30149 -13.16505 -13.03759 -12.89419 -12.51825 -12.13669 -11.96219 -11.88703 -11.63011 -11.43644 -11.17701 -10.58487 -10.53030 -10.25236 -9.56058 -8.66597 -6.35648 0.51675 1.19720 1.51938 1.60495 1.79562 2.25147 2.57135 3.00800 3.17549 3.34652 3.50570 3.97071 4.10590 4.16031 4.25752 4.30944 4.37702 4.52752 4.68061 4.73804 4.75703 4.75785 4.84503 4.92858 5.02593 5.05385 5.27619 5.29458 5.32765 5.44964 5.60728 5.81604 6.06040 6.16079 6.21863 6.61190 7.30061 7.45054 8.74320 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057994 B = 0.003633 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.695750 B = 7705.199808 C = 7840.328161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.030 4.030 3 C -0.229 4.229 4 C 0.013 3.987 5 C 0.137 3.863 6 N -0.677 5.677 7 C 0.077 3.923 8 C -0.070 4.070 9 H 0.048 0.952 10 C -0.112 4.112 11 C 0.017 3.983 12 C -0.607 4.607 13 H 0.051 0.949 14 C -0.042 4.042 15 N -0.941 5.941 16 Si 1.116 2.884 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.268 1.268 20 N -0.399 5.399 21 O 0.087 5.913 22 H 0.105 0.895 23 H 0.093 0.907 24 H 0.109 0.891 25 H 0.193 0.807 26 H 0.110 0.890 27 H 0.041 0.959 28 H 0.339 0.661 29 H 0.076 0.924 30 H 0.021 0.979 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.036 0.964 34 H -0.009 1.009 35 H -0.018 1.018 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.454 -6.115 -7.962 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 C -0.251 4.251 4 C -0.145 4.145 5 C 0.008 3.992 6 N -0.308 5.308 7 C -0.052 4.052 8 C -0.089 4.089 9 H 0.066 0.934 10 C -0.169 4.169 11 C -0.020 4.020 12 C -0.645 4.645 13 H 0.070 0.930 14 C -0.239 4.239 15 N -0.579 5.579 16 Si 0.937 3.063 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.193 1.193 20 N -0.105 5.105 21 O 0.021 5.979 22 H 0.124 0.876 23 H 0.111 0.889 24 H 0.128 0.872 25 H 0.210 0.790 26 H 0.128 0.872 27 H 0.059 0.941 28 H 0.156 0.844 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.009 0.991 35 H 0.000 1.000 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.729 -6.126 -6.928 22.699 hybrid contribution -0.417 -0.360 -1.534 1.630 sum -21.146 -6.486 -8.462 23.682 Atomic orbital electron populations 1.20575 0.80659 1.06052 1.05555 1.25323 0.98052 0.85119 1.00875 1.22714 0.90209 1.02364 1.09769 1.23645 0.98357 0.89770 1.02752 1.20233 0.89271 0.99351 0.90354 1.60511 1.30213 1.24021 1.16048 1.21916 0.88486 0.98329 0.96462 1.20914 0.94906 0.98641 0.94417 0.93388 1.21468 0.97988 0.98519 0.98916 1.19175 0.92961 0.93969 0.95939 1.22444 1.05314 1.42101 0.94642 0.93043 1.27408 0.94643 0.92812 1.09039 1.70916 1.40513 1.44998 1.01520 0.82955 0.75920 0.77571 0.69860 1.19584 1.20967 1.19313 1.73838 0.98104 1.17376 1.21230 1.84757 1.11133 1.34328 1.67667 0.87628 0.88853 0.87232 0.79025 0.87171 0.94067 0.84417 0.90604 0.96090 0.94078 0.91534 0.94475 0.99066 0.99957 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.45 71.24 0.74 0.27 16 2 C -0.03 -0.52 7.49 25.04 0.19 -0.33 16 3 C -0.23 -4.43 11.06 22.40 0.25 -4.18 16 4 C 0.01 0.33 6.84 43.58 0.30 0.63 16 5 C 0.14 3.49 6.27 85.56 0.54 4.03 16 6 N -0.68 -20.08 5.94 -517.90 -3.08 -23.16 16 7 C 0.08 2.65 5.07 86.30 0.44 3.09 16 8 C -0.07 -2.92 2.48 -10.79 -0.03 -2.95 16 9 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 10 C -0.11 -4.35 8.89 71.98 0.64 -3.71 16 11 C 0.02 0.90 3.76 29.85 0.11 1.01 16 12 C -0.61 -35.20 8.41 25.60 0.22 -34.99 16 13 H 0.05 2.91 7.06 -2.91 -0.02 2.89 16 14 C -0.04 -2.50 5.46 84.66 0.46 -2.04 16 15 N -0.94 -59.67 13.65 21.45 0.29 -59.37 16 16 Si 1.12 51.32 29.90 68.60 2.05 53.37 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 20 N -0.40 -11.27 12.07 -49.57 -0.60 -11.87 16 21 O 0.09 2.07 11.20 71.71 0.80 2.87 16 22 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 23 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 26 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 27 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.34 10.48 8.72 -89.70 -0.78 9.70 16 29 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.07 2.27 7.75 -2.39 -0.02 2.26 16 33 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16 34 H -0.01 -0.50 8.00 -2.39 -0.02 -0.52 16 35 H -0.02 -1.01 8.01 -2.39 -0.02 -1.03 16 36 H 0.25 16.30 7.22 -92.71 -0.67 15.63 16 Total: -1.00 -70.36 305.32 3.70 -66.66 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.38 Total: 10.67 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 3.86 Total: -39.16 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -3.38 Total: -94.40 kcal Atomic # 8 Polarization: 2.07 SS G_CDS: 0.80 Total: 2.87 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.05 Total: 53.37 kcal Total: -70.36 3.70 -66.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602522778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.036 kcal (2) G-P(sol) polarization free energy of solvation -70.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds