Wall clock time and date at job start Sun Mar 29 2020 22:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35444 * 126.77675 * 2 1 4 4 C 1.41380 * 103.98804 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.80649 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47318 * 94.99598 * 5 4 3 7 7 C 1.46910 * 111.00178 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47127 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47103 * 304.99844 * 8 7 6 10 10 C 1.52997 * 109.47482 * 65.00091 * 8 7 6 11 11 C 1.52999 * 109.46961 * 185.00452 * 8 7 6 12 12 C 1.50704 * 109.47137 * 175.00116 * 11 8 7 13 13 H 1.07991 * 120.00119 * 359.97438 * 12 11 8 14 14 C 1.37875 * 119.99876 * 179.97438 * 12 11 8 15 15 N 1.31519 * 120.00278 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00180 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47044 * 89.99576 * 16 14 12 18 18 H 1.48491 * 109.47429 * 209.99668 * 16 14 12 19 19 H 1.48497 * 109.46794 * 330.00036 * 16 14 12 20 20 N 1.30182 * 106.39401 * 0.25858 * 4 3 2 21 21 O 1.20925 * 111.60141 * 359.53739 * 20 4 3 22 22 H 1.08998 * 109.46534 * 90.00048 * 1 2 3 23 23 H 1.09003 * 109.47038 * 210.00082 * 1 2 3 24 24 H 1.08994 * 109.46958 * 330.00493 * 1 2 3 25 25 H 1.08003 * 128.01057 * 359.97438 * 3 2 1 26 26 H 1.09005 * 109.47095 * 334.99359 * 5 4 3 27 27 H 1.09006 * 109.47400 * 214.99998 * 5 4 3 28 28 H 1.00899 * 111.00038 * 56.05120 * 6 5 4 29 29 H 1.08996 * 109.46545 * 59.99934 * 7 6 5 30 30 H 1.09001 * 109.46699 * 300.00610 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99783 * 10 8 7 32 32 H 1.09001 * 109.46832 * 299.99974 * 10 8 7 33 33 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 34 34 H 1.09006 * 109.47194 * 294.99813 * 11 8 7 35 35 H 1.08997 * 109.47756 * 54.99294 * 11 8 7 36 36 H 0.96996 * 120.00275 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0006 5 6 4.9211 1.2999 -0.0003 6 7 5.4048 1.4428 1.3794 7 6 6.6728 2.1836 1.4187 8 6 7.1440 2.3113 2.8686 9 1 6.3558 2.7668 3.4681 10 6 7.4690 0.9230 3.4235 11 6 8.3967 3.1881 2.9224 12 6 8.7898 3.4150 4.3595 13 1 8.2045 2.9779 5.1548 14 6 9.8967 4.1805 4.6587 15 7 10.6099 4.7124 3.6901 16 14 10.3836 4.4624 6.4400 17 1 11.3157 3.3907 6.8739 18 1 11.0527 5.7819 6.5675 19 1 9.1695 4.4383 7.2947 20 7 3.4764 -0.7565 -0.0065 21 8 2.3095 -1.0737 -0.0005 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 2.0346 2.1271 -0.0004 26 1 4.7630 2.2874 -0.4341 27 1 5.6605 0.7582 -0.5903 28 1 5.4978 0.5424 1.8250 29 1 6.5263 3.1771 0.9950 30 1 7.4244 1.6483 0.8384 31 1 8.2573 0.4675 2.8240 32 1 6.5765 0.2984 3.3852 33 1 7.8052 1.0140 4.4564 34 1 9.2117 2.6900 2.3971 35 1 8.1901 4.1467 2.4465 36 1 11.3888 5.2507 3.9006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602522779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:11 Heat of formation + Delta-G solvation = 38.457211 kcal Electronic energy + Delta-G solvation = -16248.695792 eV Core-core repulsion = 13542.453642 eV Total energy + Delta-G solvation = -2706.242150 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.98919 -37.22233 -34.98020 -33.73942 -32.93419 -31.62636 -28.00286 -27.39259 -26.50366 -24.56213 -23.10021 -22.16097 -20.14696 -18.92590 -17.71163 -17.35397 -16.42407 -15.54505 -14.89653 -14.73057 -14.19527 -13.97280 -13.73105 -13.53530 -13.23636 -12.71186 -12.40974 -12.34894 -12.12779 -11.74325 -11.38160 -11.14489 -10.85170 -10.75372 -10.38536 -10.29608 -10.15629 -9.71602 -9.43979 -9.15162 -8.96376 -8.32133 -8.23014 -5.96763 -3.97893 1.36617 2.14011 2.99968 3.33958 3.40227 3.43857 4.06181 4.31154 4.47862 4.64119 4.87750 5.01186 5.07787 5.15447 5.39040 5.40685 5.43939 5.58693 5.70332 5.75102 5.84749 5.97384 6.05758 6.24584 6.45751 6.55611 6.90890 7.10819 7.16575 7.28505 7.55409 7.70472 7.86249 8.03442 8.20294 8.47261 9.08405 9.65502 11.14804 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.055653 B = 0.003617 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.000394 B = 7739.096713 C = 7829.592206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.042 4.042 3 C -0.217 4.217 4 C 0.030 3.970 5 C 0.134 3.866 6 N -0.684 5.684 7 C 0.064 3.936 8 C -0.084 4.084 9 H 0.066 0.934 10 C -0.135 4.135 11 C 0.028 3.972 12 C -0.513 4.513 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.366 5.366 21 O 0.097 5.903 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.171 0.829 26 H 0.094 0.906 27 H 0.045 0.955 28 H 0.342 0.658 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.016 0.984 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.453 -7.944 -8.779 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.238 4.238 4 C -0.129 4.129 5 C 0.004 3.996 6 N -0.318 5.318 7 C -0.064 4.064 8 C -0.103 4.103 9 H 0.084 0.916 10 C -0.192 4.192 11 C -0.009 4.009 12 C -0.551 4.551 13 H 0.075 0.925 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.070 5.070 21 O 0.030 5.970 22 H 0.104 0.896 23 H 0.101 0.899 24 H 0.109 0.891 25 H 0.189 0.811 26 H 0.112 0.888 27 H 0.063 0.937 28 H 0.161 0.839 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.820 -8.308 -8.701 21.501 hybrid contribution 0.701 0.376 0.611 1.003 sum -17.119 -7.932 -8.090 20.528 Atomic orbital electron populations 1.20307 0.84131 1.04616 1.03880 1.24489 0.96342 0.86303 1.03430 1.22413 0.91258 1.00998 1.09164 1.23550 0.97624 0.89698 1.02070 1.20221 0.89039 0.98369 0.91959 1.60613 1.32097 1.24594 1.14452 1.22189 0.87411 0.97560 0.99253 1.21228 1.00015 0.96675 0.92379 0.91561 1.21750 0.98780 0.96400 1.02295 1.19111 0.90785 0.93952 0.97078 1.21238 1.10747 1.30685 0.92449 0.92550 1.25021 0.96588 0.95919 0.97033 1.69965 1.17859 1.34446 1.31435 0.86623 0.78657 0.77453 0.85455 1.20761 1.21295 1.19869 1.73845 0.96908 1.16578 1.19690 1.84804 1.11320 1.33222 1.67651 0.89607 0.89945 0.89060 0.81147 0.88808 0.93653 0.83913 0.91109 0.95510 0.93949 0.95040 0.91764 0.96704 0.96588 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.45 36.01 0.38 0.01 16 2 C -0.04 -0.41 7.49 -35.30 -0.26 -0.68 16 3 C -0.22 -2.37 11.06 -39.38 -0.44 -2.80 16 4 C 0.03 0.40 6.84 -82.10 -0.56 -0.16 16 5 C 0.13 1.81 6.27 -4.98 -0.03 1.78 16 6 N -0.68 -10.75 6.49 -115.06 -0.75 -11.50 16 7 C 0.06 1.13 5.14 -3.82 -0.02 1.11 16 8 C -0.08 -1.75 2.54 -90.63 -0.23 -1.98 16 9 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 10 C -0.13 -2.61 8.78 37.16 0.33 -2.29 16 11 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 12 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 13 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 N -0.37 -5.28 12.07 33.42 0.40 -4.88 16 21 O 0.10 1.21 11.20 17.17 0.19 1.40 16 22 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.34 5.47 6.98 -39.29 -0.27 5.20 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 33 H 0.06 1.33 6.95 -51.93 -0.36 0.97 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 304.37 15.07 4.59 4.59 Total: -1.00 -31.51 304.37 -6.76 -38.27 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.56 Total: -0.62 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.35 Total: -17.69 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.39 Total: -42.78 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.19 Total: 1.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.51 -6.76 -38.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602522779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.727 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds