Wall clock time and date at job start Sun Mar 29 2020 22:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35444 * 126.77675 * 2 1 4 4 C 1.41380 * 103.98804 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.80649 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47318 * 94.99598 * 5 4 3 7 7 C 1.46910 * 111.00178 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47127 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47103 * 304.99844 * 8 7 6 10 10 C 1.52997 * 109.47482 * 65.00091 * 8 7 6 11 11 C 1.52999 * 109.46961 * 185.00452 * 8 7 6 12 12 C 1.50704 * 109.47137 * 175.00116 * 11 8 7 13 13 H 1.07991 * 120.00119 * 359.97438 * 12 11 8 14 14 C 1.37875 * 119.99876 * 179.97438 * 12 11 8 15 15 N 1.31519 * 120.00278 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00180 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47044 * 89.99576 * 16 14 12 18 18 H 1.48491 * 109.47429 * 209.99668 * 16 14 12 19 19 H 1.48497 * 109.46794 * 330.00036 * 16 14 12 20 20 N 1.30182 * 106.39401 * 0.25858 * 4 3 2 21 21 O 1.20925 * 111.60141 * 359.53739 * 20 4 3 22 22 H 1.08998 * 109.46534 * 90.00048 * 1 2 3 23 23 H 1.09003 * 109.47038 * 210.00082 * 1 2 3 24 24 H 1.08994 * 109.46958 * 330.00493 * 1 2 3 25 25 H 1.08003 * 128.01057 * 359.97438 * 3 2 1 26 26 H 1.09005 * 109.47095 * 334.99359 * 5 4 3 27 27 H 1.09006 * 109.47400 * 214.99998 * 5 4 3 28 28 H 1.00899 * 111.00038 * 56.05120 * 6 5 4 29 29 H 1.08996 * 109.46545 * 59.99934 * 7 6 5 30 30 H 1.09001 * 109.46699 * 300.00610 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99783 * 10 8 7 32 32 H 1.09001 * 109.46832 * 299.99974 * 10 8 7 33 33 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 34 34 H 1.09006 * 109.47194 * 294.99813 * 11 8 7 35 35 H 1.08997 * 109.47756 * 54.99294 * 11 8 7 36 36 H 0.96996 * 120.00275 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0006 5 6 4.9211 1.2999 -0.0003 6 7 5.4048 1.4428 1.3794 7 6 6.6728 2.1836 1.4187 8 6 7.1440 2.3113 2.8686 9 1 6.3558 2.7668 3.4681 10 6 7.4690 0.9230 3.4235 11 6 8.3967 3.1881 2.9224 12 6 8.7898 3.4150 4.3595 13 1 8.2045 2.9779 5.1548 14 6 9.8967 4.1805 4.6587 15 7 10.6099 4.7124 3.6901 16 14 10.3836 4.4624 6.4400 17 1 11.3157 3.3907 6.8739 18 1 11.0527 5.7819 6.5675 19 1 9.1695 4.4383 7.2947 20 7 3.4764 -0.7565 -0.0065 21 8 2.3095 -1.0737 -0.0005 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 2.0346 2.1271 -0.0004 26 1 4.7630 2.2874 -0.4341 27 1 5.6605 0.7582 -0.5903 28 1 5.4978 0.5424 1.8250 29 1 6.5263 3.1771 0.9950 30 1 7.4244 1.6483 0.8384 31 1 8.2573 0.4675 2.8240 32 1 6.5765 0.2984 3.3852 33 1 7.8052 1.0140 4.4564 34 1 9.2117 2.6900 2.3971 35 1 8.1901 4.1467 2.4465 36 1 11.3888 5.2507 3.9006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602522779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:10 Heat of formation + Delta-G solvation = 18.056947 kcal Electronic energy + Delta-G solvation = -16249.580413 eV Core-core repulsion = 13542.453642 eV Total energy + Delta-G solvation = -2707.126772 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.90784 -38.65356 -36.36524 -34.85138 -34.26515 -33.23767 -29.20502 -28.60763 -27.97478 -26.17224 -24.14141 -23.82936 -21.17252 -20.50806 -18.66258 -18.56441 -18.19700 -16.92013 -16.61698 -15.85077 -15.73917 -15.16944 -14.81404 -14.43753 -14.17240 -13.96931 -13.89173 -13.46244 -13.29213 -13.27341 -13.06191 -12.75320 -12.61653 -12.24381 -12.04800 -11.96117 -11.54227 -11.28194 -11.08332 -10.92283 -10.53476 -10.22871 -9.50674 -8.17633 -6.26668 0.53973 1.22374 1.40433 1.41274 1.52480 2.27352 2.42179 3.05856 3.15887 3.40301 3.54198 4.11919 4.15686 4.18088 4.30535 4.33459 4.44482 4.56152 4.71044 4.73295 4.77450 4.82338 4.94834 4.98827 5.04994 5.20468 5.29444 5.34290 5.44221 5.53779 5.76323 5.88024 5.93414 6.25776 6.30618 6.89036 7.32320 7.41549 8.94468 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.055653 B = 0.003617 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.000394 B = 7739.096713 C = 7829.592206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.030 4.030 3 C -0.230 4.230 4 C 0.013 3.987 5 C 0.136 3.864 6 N -0.683 5.683 7 C 0.077 3.923 8 C -0.076 4.076 9 H 0.059 0.941 10 C -0.128 4.128 11 C 0.034 3.966 12 C -0.530 4.530 13 H 0.060 0.940 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.961 3.039 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.264 1.264 20 N -0.398 5.398 21 O 0.087 5.913 22 H 0.105 0.895 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.192 0.808 26 H 0.108 0.892 27 H 0.043 0.957 28 H 0.340 0.660 29 H 0.071 0.929 30 H 0.026 0.974 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.048 0.952 34 H -0.010 1.010 35 H -0.009 1.009 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.330 -8.265 -8.260 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 C -0.252 4.252 4 C -0.145 4.145 5 C 0.007 3.993 6 N -0.316 5.316 7 C -0.052 4.052 8 C -0.095 4.095 9 H 0.077 0.923 10 C -0.185 4.185 11 C -0.004 4.004 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.188 1.188 20 N -0.104 5.104 21 O 0.021 5.979 22 H 0.124 0.876 23 H 0.112 0.888 24 H 0.127 0.873 25 H 0.209 0.791 26 H 0.127 0.873 27 H 0.061 0.939 28 H 0.159 0.841 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.009 0.991 35 H 0.010 0.990 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.720 -8.642 -8.186 23.034 hybrid contribution 1.205 0.463 0.394 1.350 sum -18.514 -8.179 -7.792 21.688 Atomic orbital electron populations 1.20573 0.80671 1.06035 1.05547 1.25310 0.98034 0.85109 1.00907 1.22718 0.90305 1.02367 1.09798 1.23662 0.98373 0.89801 1.02695 1.20238 0.89284 0.99314 0.90494 1.60545 1.30563 1.24351 1.16108 1.21909 0.88416 0.98041 0.96839 1.21023 0.97348 0.96436 0.94647 0.92290 1.21658 0.99973 0.95850 1.01027 1.18992 0.92311 0.93476 0.95593 1.21639 1.10961 1.30594 0.93616 0.92168 1.25944 0.96616 0.95636 1.01732 1.70096 1.18435 1.35226 1.33839 0.85505 0.78592 0.77482 0.79836 1.19959 1.20846 1.18781 1.73834 0.98069 1.17283 1.21230 1.84758 1.11143 1.34278 1.67677 0.87629 0.88816 0.87299 0.79124 0.87340 0.93864 0.84090 0.91100 0.95567 0.94069 0.92264 0.93336 0.99142 0.99043 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 71.24 0.74 0.25 16 2 C -0.03 -0.52 7.49 25.04 0.19 -0.34 16 3 C -0.23 -4.60 11.06 22.40 0.25 -4.35 16 4 C 0.01 0.33 6.84 43.57 0.30 0.63 16 5 C 0.14 3.55 6.27 85.56 0.54 4.09 16 6 N -0.68 -20.78 6.49 -517.93 -3.36 -24.14 16 7 C 0.08 2.68 5.14 86.30 0.44 3.13 16 8 C -0.08 -3.16 2.54 -10.80 -0.03 -3.18 16 9 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 10 C -0.13 -4.88 8.78 71.98 0.63 -4.25 16 11 C 0.03 1.79 4.45 29.85 0.13 1.93 16 12 C -0.53 -30.26 8.41 25.60 0.22 -30.05 16 13 H 0.06 3.32 7.06 -2.92 -0.02 3.30 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 15 N -0.94 -57.47 13.29 21.45 0.28 -57.19 16 16 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 20 N -0.40 -11.26 12.07 -49.55 -0.60 -11.86 16 21 O 0.09 2.08 11.20 71.61 0.80 2.88 16 22 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 23 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 26 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 27 H 0.04 1.14 8.14 -2.38 -0.02 1.13 16 28 H 0.34 10.52 6.98 -89.69 -0.63 9.89 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.92 6.68 -2.39 -0.02 1.90 16 33 H 0.05 1.98 6.95 -2.38 -0.02 1.97 16 34 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 35 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -68.26 304.37 3.46 -64.80 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.43 Total: 10.45 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.87 Total: -31.80 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -3.67 Total: -93.18 kcal Atomic # 8 Polarization: 2.08 SS G_CDS: 0.80 Total: 2.88 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -68.26 3.46 -64.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602522779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.854 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds