Wall clock time and date at job start Sun Mar 29 2020 22:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41379 * 126.80511 * 2 1 4 4 C 1.35456 * 103.98672 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.77436 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47119 * 90.00204 * 5 4 3 7 7 C 1.46903 * 111.00043 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47368 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46617 * 55.00168 * 8 7 6 10 10 C 1.53005 * 109.47107 * 295.00343 * 8 7 6 11 11 C 1.53002 * 109.47329 * 174.99975 * 8 7 6 12 12 C 1.50696 * 109.46919 * 185.00033 * 11 8 7 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 89.99934 * 16 14 12 18 18 H 1.48499 * 109.47026 * 209.99782 * 16 14 12 19 19 H 1.48496 * 109.47474 * 329.99818 * 16 14 12 20 20 O 1.34040 * 106.44389 * 0.24334 * 4 3 2 21 21 N 1.20916 * 111.56719 * 359.55892 * 20 4 3 22 22 H 1.09001 * 109.46887 * 90.00293 * 1 2 3 23 23 H 1.08995 * 109.47130 * 210.00286 * 1 2 3 24 24 H 1.08997 * 109.47238 * 330.00546 * 1 2 3 25 25 H 1.07998 * 128.00758 * 0.03289 * 3 2 1 26 26 H 1.09006 * 109.47218 * 330.00022 * 5 4 3 27 27 H 1.09009 * 109.47117 * 210.00390 * 5 4 3 28 28 H 1.00898 * 111.00104 * 56.04644 * 6 5 4 29 29 H 1.09008 * 109.46872 * 60.00082 * 7 6 5 30 30 H 1.09005 * 109.47368 * 300.00424 * 7 6 5 31 31 H 1.08997 * 109.46686 * 299.99929 * 10 8 7 32 32 H 1.09001 * 109.47004 * 59.99757 * 10 8 7 33 33 H 1.08997 * 109.47105 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.46497 * 65.00298 * 11 8 7 35 35 H 1.08999 * 109.46623 * 305.00362 * 11 8 7 36 36 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9022 1.3694 -0.0014 6 7 5.3253 1.6174 1.3833 7 6 6.5921 2.3602 1.4217 8 6 6.9991 2.5995 2.8771 9 1 7.0378 1.6466 3.4048 10 6 5.9732 3.5138 3.5498 11 6 8.3777 3.2620 2.9188 12 6 8.8322 3.3860 4.3502 13 1 8.2008 3.0284 5.1502 14 6 10.0537 3.9568 4.6387 15 7 10.8196 4.3980 3.6648 16 14 10.6168 4.1112 6.4131 17 1 11.3739 2.8936 6.7998 18 1 11.4914 5.3031 6.5529 19 1 9.4329 4.2596 7.2971 20 8 3.4537 -0.7254 -0.0064 21 7 2.2868 -1.0423 -0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 2.0711 2.1743 0.0005 26 1 4.7649 2.3209 -0.5153 27 1 5.6658 0.7857 -0.5156 28 1 5.3972 0.7536 1.8997 29 1 6.4668 3.3185 0.9176 30 1 7.3672 1.7830 0.9175 31 1 5.9345 4.4666 3.0219 32 1 4.9912 3.0418 3.5200 33 1 6.2629 3.6839 4.5867 34 1 8.3181 4.2532 2.4693 35 1 9.0903 2.6530 2.3627 36 1 10.5271 4.3182 2.7435 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602594849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:05 Heat of formation + Delta-G solvation = 34.336480 kcal Electronic energy + Delta-G solvation = -16295.420210 eV Core-core repulsion = 13588.999372 eV Total energy + Delta-G solvation = -2706.420838 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.01513 -37.26447 -34.96034 -34.66347 -32.59357 -31.14957 -28.87502 -26.91066 -26.29494 -24.23854 -23.16813 -22.33489 -20.32364 -19.39161 -17.71732 -17.27909 -16.70679 -15.77581 -14.99853 -14.55783 -14.15866 -13.71636 -13.60391 -13.46091 -13.33460 -13.20774 -12.77283 -12.47021 -11.82072 -11.74659 -11.45644 -11.18838 -11.02682 -10.67860 -10.31028 -10.14158 -10.09916 -9.86202 -9.65957 -9.41003 -8.48797 -8.39149 -8.29852 -6.33011 -4.01269 1.32035 2.09544 2.94570 3.45047 3.48600 3.64242 4.03897 4.23195 4.39779 4.57556 4.85230 5.00446 5.10178 5.20454 5.31005 5.40330 5.43185 5.52684 5.60714 5.62623 5.72118 5.95422 5.98632 6.23557 6.36835 6.53712 6.81219 6.99477 7.05419 7.13072 7.34888 7.41319 7.56984 8.14337 8.25940 8.50275 8.92186 9.70101 11.07550 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057162 B = 0.003654 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.716614 B = 7661.500631 C = 7808.973523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.011 3.989 3 C -0.215 4.215 4 C -0.020 4.020 5 C 0.137 3.863 6 N -0.682 5.682 7 C 0.063 3.937 8 C -0.076 4.076 9 H 0.056 0.944 10 C -0.123 4.123 11 C 0.014 3.986 12 C -0.594 4.594 13 H 0.050 0.950 14 C 0.013 3.987 15 N -0.916 5.916 16 Si 1.070 2.930 17 H -0.289 1.289 18 H -0.285 1.285 19 H -0.289 1.289 20 O 0.095 5.905 21 N -0.369 5.369 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.171 0.829 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.344 0.656 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.008 0.992 35 H 0.004 0.996 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.054 -5.962 -8.508 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.147 4.147 3 C -0.237 4.237 4 C -0.084 4.084 5 C 0.007 3.993 6 N -0.314 5.314 7 C -0.065 4.065 8 C -0.095 4.095 9 H 0.075 0.925 10 C -0.180 4.180 11 C -0.023 4.023 12 C -0.633 4.633 13 H 0.069 0.931 14 C -0.191 4.191 15 N -0.553 5.553 16 Si 0.898 3.102 17 H -0.216 1.216 18 H -0.211 1.211 19 H -0.215 1.215 20 O 0.029 5.971 21 N -0.074 5.074 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.189 0.811 26 H 0.122 0.878 27 H 0.071 0.929 28 H 0.162 0.838 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.026 0.974 35 H 0.022 0.978 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.421 -6.174 -7.484 19.073 hybrid contribution -0.706 -0.391 -1.259 1.496 sum -17.127 -6.564 -8.743 20.319 Atomic orbital electron populations 1.20147 0.86035 1.03786 1.03199 1.23628 0.99029 0.89005 1.03082 1.22409 0.91042 1.01085 1.09185 1.24479 0.98557 0.83316 1.02082 1.20385 0.88563 0.97733 0.92588 1.60607 1.33975 1.26413 1.10447 1.22228 0.87329 0.97423 0.99556 1.21078 0.97408 0.99241 0.91777 0.92532 1.21588 0.97237 0.98323 1.00872 1.19252 0.90477 0.94783 0.97813 1.22057 1.05491 1.43527 0.92180 0.93142 1.25827 0.93666 0.93692 1.05887 1.70753 1.39257 1.44370 1.00925 0.83532 0.75637 0.76744 0.74251 1.21550 1.21068 1.21483 1.84803 1.21621 1.23056 1.67575 1.73834 0.89358 1.24243 1.20007 0.90310 0.90658 0.89974 0.81111 0.87750 0.92877 0.83820 0.91134 0.95244 0.94166 0.93808 0.92552 0.97408 0.97798 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.47 36.01 0.38 -0.19 16 2 C 0.01 0.13 7.33 -82.10 -0.60 -0.47 16 3 C -0.21 -2.34 11.06 -39.38 -0.44 -2.78 16 4 C -0.02 -0.24 7.00 -35.30 -0.25 -0.49 16 5 C 0.14 1.51 6.25 -4.98 -0.03 1.48 16 6 N -0.68 -9.22 5.94 -115.05 -0.68 -9.90 16 7 C 0.06 1.00 5.07 -3.82 -0.02 0.98 16 8 C -0.08 -1.51 2.48 -90.62 -0.22 -1.74 16 9 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 10 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 11 C 0.01 0.36 3.76 -27.88 -0.10 0.25 16 12 C -0.59 -16.70 8.41 -34.44 -0.29 -16.99 16 13 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 14 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 15 N -0.92 -28.09 13.65 55.43 0.76 -27.34 16 16 Si 1.07 25.43 29.90 -169.99 -5.08 20.35 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 20 O 0.10 1.27 11.20 17.18 0.19 1.46 16 21 N -0.37 -5.04 12.07 33.42 0.40 -4.63 16 22 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 26 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 28 H 0.34 4.65 8.72 -39.29 -0.34 4.31 16 29 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 33 H 0.06 1.18 6.95 -51.93 -0.36 0.82 16 34 H 0.01 0.20 8.00 -51.93 -0.42 -0.21 16 35 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 36 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -31.37 305.32 -6.78 -38.16 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.63 Total: -1.00 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.34 Total: -21.70 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.48 Total: -41.87 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.19 Total: 1.46 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.37 -6.78 -38.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602594849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.492 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds