Wall clock time and date at job start Sun Mar 29 2020 22:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41379 * 126.80511 * 2 1 4 4 C 1.35456 * 103.98672 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.77436 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47119 * 90.00204 * 5 4 3 7 7 C 1.46903 * 111.00043 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47368 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46617 * 55.00168 * 8 7 6 10 10 C 1.53005 * 109.47107 * 295.00343 * 8 7 6 11 11 C 1.53002 * 109.47329 * 174.99975 * 8 7 6 12 12 C 1.50696 * 109.46919 * 185.00033 * 11 8 7 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 89.99934 * 16 14 12 18 18 H 1.48499 * 109.47026 * 209.99782 * 16 14 12 19 19 H 1.48496 * 109.47474 * 329.99818 * 16 14 12 20 20 O 1.34040 * 106.44389 * 0.24334 * 4 3 2 21 21 N 1.20916 * 111.56719 * 359.55892 * 20 4 3 22 22 H 1.09001 * 109.46887 * 90.00293 * 1 2 3 23 23 H 1.08995 * 109.47130 * 210.00286 * 1 2 3 24 24 H 1.08997 * 109.47238 * 330.00546 * 1 2 3 25 25 H 1.07998 * 128.00758 * 0.03289 * 3 2 1 26 26 H 1.09006 * 109.47218 * 330.00022 * 5 4 3 27 27 H 1.09009 * 109.47117 * 210.00390 * 5 4 3 28 28 H 1.00898 * 111.00104 * 56.04644 * 6 5 4 29 29 H 1.09008 * 109.46872 * 60.00082 * 7 6 5 30 30 H 1.09005 * 109.47368 * 300.00424 * 7 6 5 31 31 H 1.08997 * 109.46686 * 299.99929 * 10 8 7 32 32 H 1.09001 * 109.47004 * 59.99757 * 10 8 7 33 33 H 1.08997 * 109.47105 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.46497 * 65.00298 * 11 8 7 35 35 H 1.08999 * 109.46623 * 305.00362 * 11 8 7 36 36 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9022 1.3694 -0.0014 6 7 5.3253 1.6174 1.3833 7 6 6.5921 2.3602 1.4217 8 6 6.9991 2.5995 2.8771 9 1 7.0378 1.6466 3.4048 10 6 5.9732 3.5138 3.5498 11 6 8.3777 3.2620 2.9188 12 6 8.8322 3.3860 4.3502 13 1 8.2008 3.0284 5.1502 14 6 10.0537 3.9568 4.6387 15 7 10.8196 4.3980 3.6648 16 14 10.6168 4.1112 6.4131 17 1 11.3739 2.8936 6.7998 18 1 11.4914 5.3031 6.5529 19 1 9.4329 4.2596 7.2971 20 8 3.4537 -0.7254 -0.0064 21 7 2.2868 -1.0423 -0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 2.0711 2.1743 0.0005 26 1 4.7649 2.3209 -0.5153 27 1 5.6658 0.7857 -0.5156 28 1 5.3972 0.7536 1.8997 29 1 6.4668 3.3185 0.9176 30 1 7.3672 1.7830 0.9175 31 1 5.9345 4.4666 3.0219 32 1 4.9912 3.0418 3.5200 33 1 6.2629 3.6839 4.5867 34 1 8.3181 4.2532 2.4693 35 1 9.0903 2.6530 2.3627 36 1 10.5271 4.3182 2.7435 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602594849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:05 Heat of formation + Delta-G solvation = 14.385511 kcal Electronic energy + Delta-G solvation = -16296.285349 eV Core-core repulsion = 13588.999372 eV Total energy + Delta-G solvation = -2707.285977 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.90658 -38.60979 -36.28775 -35.70883 -34.34164 -32.39719 -29.57291 -28.60228 -27.71646 -25.79533 -24.13091 -23.95870 -21.38554 -20.78272 -18.87091 -18.60862 -18.21060 -16.87495 -16.15540 -15.90473 -15.55399 -15.38705 -15.06644 -14.35459 -14.18536 -14.01197 -13.93550 -13.64139 -13.44014 -13.15487 -12.96693 -12.86325 -12.49108 -12.08098 -11.93947 -11.87580 -11.57172 -11.33698 -10.95733 -10.61785 -10.50675 -10.42051 -9.49453 -8.63668 -6.32583 0.42135 1.26597 1.53291 1.62130 1.79624 2.08071 2.58494 3.20140 3.23217 3.29244 3.48642 3.98701 4.08475 4.16561 4.26399 4.37219 4.43624 4.56930 4.65630 4.69427 4.79749 4.82402 4.89075 4.91862 4.94170 5.09942 5.26001 5.34735 5.37211 5.50215 5.65809 5.85223 6.09732 6.22913 6.26602 6.65161 7.26261 7.47611 8.77467 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057162 B = 0.003654 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.716614 B = 7661.500631 C = 7808.973523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.009 3.991 3 C -0.213 4.213 4 C -0.028 4.028 5 C 0.141 3.859 6 N -0.682 5.682 7 C 0.077 3.923 8 C -0.071 4.071 9 H 0.050 0.950 10 C -0.113 4.113 11 C 0.016 3.984 12 C -0.605 4.605 13 H 0.050 0.950 14 C -0.042 4.042 15 N -0.943 5.943 16 Si 1.116 2.884 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.270 1.270 20 O 0.075 5.925 21 N -0.400 5.400 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.101 0.899 25 H 0.194 0.806 26 H 0.123 0.877 27 H 0.061 0.939 28 H 0.344 0.656 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.033 0.967 34 H -0.009 1.009 35 H -0.015 1.015 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.691 -5.835 -8.301 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.150 4.150 3 C -0.235 4.235 4 C -0.092 4.092 5 C 0.012 3.988 6 N -0.314 5.314 7 C -0.051 4.051 8 C -0.090 4.090 9 H 0.069 0.931 10 C -0.170 4.170 11 C -0.021 4.021 12 C -0.643 4.643 13 H 0.069 0.931 14 C -0.239 4.239 15 N -0.581 5.581 16 Si 0.938 3.062 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.194 1.194 20 O 0.012 5.988 21 N -0.109 5.109 22 H 0.113 0.887 23 H 0.093 0.907 24 H 0.120 0.880 25 H 0.212 0.788 26 H 0.141 0.859 27 H 0.079 0.921 28 H 0.161 0.839 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.009 0.991 35 H 0.003 0.997 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.065 -6.058 -7.293 20.402 hybrid contribution -0.267 -0.443 -1.370 1.465 sum -18.332 -6.501 -8.664 21.293 Atomic orbital electron populations 1.20323 0.83622 1.04762 1.04506 1.24284 1.00660 0.88640 1.01409 1.22775 0.90516 1.02055 1.08153 1.24637 0.99147 0.82981 1.02410 1.20444 0.88510 0.98750 0.91119 1.60525 1.32160 1.26431 1.12246 1.21903 0.88533 0.98198 0.96486 1.20919 0.94802 0.98454 0.94777 0.93147 1.21483 0.98011 0.98345 0.99208 1.19187 0.93132 0.93975 0.95855 1.22475 1.05485 1.42678 0.93703 0.93147 1.27341 0.94230 0.93081 1.09250 1.70887 1.40074 1.46367 1.00771 0.82938 0.76103 0.77230 0.69915 1.19995 1.20973 1.19441 1.84766 1.21785 1.23902 1.68339 1.73837 0.89745 1.25568 1.21799 0.88742 0.90682 0.87993 0.78836 0.85924 0.92053 0.83853 0.90556 0.95375 0.94160 0.91397 0.94805 0.99113 0.99708 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.47 71.24 0.75 -0.22 16 2 C 0.01 0.18 7.33 43.58 0.32 0.50 16 3 C -0.21 -4.12 11.06 22.40 0.25 -3.87 16 4 C -0.03 -0.61 7.00 25.04 0.18 -0.44 16 5 C 0.14 2.79 6.25 85.56 0.53 3.33 16 6 N -0.68 -17.05 5.94 -517.90 -3.08 -20.13 16 7 C 0.08 2.37 5.07 86.30 0.44 2.80 16 8 C -0.07 -2.77 2.48 -10.79 -0.03 -2.80 16 9 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 10 C -0.11 -4.20 8.89 71.98 0.64 -3.56 16 11 C 0.02 0.81 3.76 29.85 0.11 0.93 16 12 C -0.61 -34.27 8.41 25.60 0.22 -34.06 16 13 H 0.05 2.80 7.06 -2.91 -0.02 2.78 16 14 C -0.04 -2.45 5.46 84.66 0.46 -1.99 16 15 N -0.94 -58.71 13.65 21.45 0.29 -58.42 16 16 Si 1.12 50.72 29.90 68.60 2.05 52.77 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 O 0.07 1.94 11.20 71.64 0.80 2.74 16 21 N -0.40 -10.62 12.07 -49.55 -0.60 -11.22 16 22 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 26 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.06 1.14 8.14 -2.38 -0.02 1.13 16 28 H 0.34 8.75 8.72 -89.70 -0.78 7.97 16 29 H 0.08 2.26 8.14 -2.38 -0.02 2.25 16 30 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 2.18 7.75 -2.39 -0.02 2.16 16 33 H 0.03 1.38 6.95 -2.39 -0.02 1.36 16 34 H -0.01 -0.51 8.00 -2.39 -0.02 -0.53 16 35 H -0.02 -0.83 8.01 -2.39 -0.02 -0.85 16 36 H 0.26 16.03 7.22 -92.71 -0.67 15.36 16 Total: -1.00 -67.73 305.32 3.71 -64.02 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.38 Total: 9.61 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 3.86 Total: -39.37 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -3.38 Total: -89.77 kcal Atomic # 8 Polarization: 1.94 SS G_CDS: 0.80 Total: 2.74 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.77 kcal Total: -67.73 3.71 -64.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602594849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.408 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds