Wall clock time and date at job start Sun Mar 29 2020 22:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41383 * 126.80151 * 2 1 4 4 C 1.35450 * 103.98987 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.78011 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47318 * 89.99553 * 5 4 3 7 7 C 1.46910 * 111.00178 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47127 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47103 * 304.99844 * 8 7 6 10 10 C 1.52997 * 109.47482 * 65.00091 * 8 7 6 11 11 C 1.52999 * 109.46961 * 185.00452 * 8 7 6 12 12 C 1.50704 * 109.47137 * 175.00116 * 11 8 7 13 13 H 1.07991 * 120.00119 * 359.97438 * 12 11 8 14 14 C 1.37875 * 119.99876 * 179.97438 * 12 11 8 15 15 N 1.31519 * 120.00278 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00180 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46784 * 59.99793 * 16 14 12 18 18 H 1.48494 * 109.47471 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47106 * 300.00138 * 16 14 12 20 20 O 1.34044 * 106.44701 * 0.23782 * 4 3 2 21 21 N 1.20932 * 111.56117 * 359.56685 * 20 4 3 22 22 H 1.09000 * 109.47026 * 90.00157 * 1 2 3 23 23 H 1.09007 * 109.46438 * 209.99788 * 1 2 3 24 24 H 1.08992 * 109.47319 * 329.99772 * 1 2 3 25 25 H 1.08002 * 128.00456 * 0.03462 * 3 2 1 26 26 H 1.09005 * 109.47095 * 329.99313 * 5 4 3 27 27 H 1.09006 * 109.47400 * 209.99953 * 5 4 3 28 28 H 1.00899 * 111.00038 * 56.05120 * 6 5 4 29 29 H 1.08996 * 109.46545 * 59.99934 * 7 6 5 30 30 H 1.09001 * 109.46699 * 300.00610 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99783 * 10 8 7 32 32 H 1.09001 * 109.46832 * 299.99974 * 10 8 7 33 33 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 34 34 H 1.09006 * 109.47194 * 294.99813 * 11 8 7 35 35 H 1.08997 * 109.47756 * 54.99294 * 11 8 7 36 36 H 0.96996 * 120.00275 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6069 -0.0006 5 6 4.9021 1.3697 -0.0014 6 7 5.3251 1.6178 1.3833 7 6 6.5914 2.3617 1.4217 8 6 6.9989 2.6000 2.8770 9 1 6.1859 3.0984 3.4050 10 6 7.2971 1.2585 3.5494 11 6 8.2494 3.4806 2.9187 12 6 8.5796 3.8167 4.3502 13 1 7.9594 3.4403 5.1501 14 6 9.6736 4.6047 4.6386 15 7 10.4293 5.0627 3.6645 16 14 10.0825 5.0219 6.4129 17 1 10.3326 3.7696 7.1708 18 1 11.2970 5.8754 6.4535 19 1 8.9433 5.7518 7.0249 20 8 3.4539 -0.7252 -0.0062 21 7 2.2869 -1.0423 -0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3632 -0.8901 0.5139 24 1 -0.3633 0.8899 0.5138 25 1 2.0709 2.1743 0.0005 26 1 4.7647 2.3211 -0.5154 27 1 5.6657 0.7860 -0.5156 28 1 5.3971 0.7540 1.8997 29 1 6.4652 3.3199 0.9177 30 1 7.3668 1.7852 0.9172 31 1 8.1101 0.7601 3.0213 32 1 6.4062 0.6312 3.5196 33 1 7.5879 1.4283 4.5861 34 1 9.0858 2.9454 2.4690 35 1 8.0653 4.3998 2.3628 36 1 11.1991 5.6168 3.8674 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602594850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:07 Heat of formation + Delta-G solvation = 38.430649 kcal Electronic energy + Delta-G solvation = -16266.022403 eV Core-core repulsion = 13559.779102 eV Total energy + Delta-G solvation = -2706.243302 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.97362 -37.23451 -34.90651 -34.48339 -32.45416 -31.12224 -28.84257 -27.19882 -26.38687 -24.46382 -23.13175 -22.19671 -20.23169 -19.03173 -17.67164 -17.27550 -16.48165 -15.75916 -14.82472 -14.76146 -14.21421 -13.86524 -13.57447 -13.32828 -13.23198 -13.14582 -12.38435 -12.36330 -12.27294 -11.74089 -11.38462 -11.17412 -10.88961 -10.75900 -10.36900 -10.27222 -10.10674 -9.76279 -9.56135 -9.16613 -8.99770 -8.34741 -8.32377 -5.98517 -3.99822 1.36037 2.13295 2.98922 3.34382 3.38806 3.41359 4.07338 4.28032 4.43591 4.52134 4.89853 5.05324 5.14359 5.23313 5.36350 5.37352 5.45148 5.63057 5.66393 5.69071 5.76287 5.99182 6.01608 6.19434 6.40604 6.51330 6.83903 7.07988 7.12646 7.20227 7.45540 7.67707 7.83239 8.01341 8.17831 8.44927 9.06262 9.63720 11.12965 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.055293 B = 0.003637 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.267945 B = 7697.482278 C = 7802.148179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.011 3.989 3 C -0.215 4.215 4 C -0.020 4.020 5 C 0.137 3.863 6 N -0.686 5.686 7 C 0.064 3.936 8 C -0.084 4.084 9 H 0.066 0.934 10 C -0.136 4.136 11 C 0.029 3.971 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 O 0.094 5.906 21 N -0.370 5.370 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.172 0.828 26 H 0.105 0.895 27 H 0.053 0.947 28 H 0.344 0.656 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.042 0.958 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.016 0.984 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.165 -7.837 -8.645 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.147 4.147 3 C -0.238 4.238 4 C -0.084 4.084 5 C 0.007 3.993 6 N -0.319 5.319 7 C -0.064 4.064 8 C -0.103 4.103 9 H 0.085 0.915 10 C -0.193 4.193 11 C -0.009 4.009 12 C -0.553 4.553 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 O 0.029 5.971 21 N -0.075 5.075 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.189 0.811 26 H 0.123 0.877 27 H 0.071 0.929 28 H 0.163 0.837 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.601 -8.492 -8.616 19.742 hybrid contribution 0.866 0.483 0.707 1.218 sum -14.735 -8.009 -7.909 18.542 Atomic orbital electron populations 1.20146 0.86060 1.03772 1.03182 1.23626 0.99013 0.89029 1.03078 1.22417 0.91043 1.01103 1.09210 1.24508 0.98620 0.83282 1.01971 1.20397 0.88487 0.97748 0.92709 1.60659 1.34189 1.26670 1.10393 1.22208 0.87202 0.97382 0.99617 1.21235 1.00408 0.96828 0.91866 0.91518 1.21758 0.98795 0.96577 1.02170 1.19106 0.90823 0.93873 0.97092 1.21198 1.10839 1.30624 0.92617 0.92596 1.25015 0.96405 0.96093 0.96987 1.69951 1.17029 1.35323 1.31384 0.86686 0.77710 0.78370 0.85402 1.20300 1.21373 1.20258 1.84804 1.21610 1.23086 1.67615 1.73833 0.89369 1.24252 1.20076 0.90325 0.90685 0.89971 0.81075 0.87687 0.92900 0.83689 0.90987 0.95229 0.93881 0.94968 0.91754 0.96668 0.96594 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.47 36.00 0.38 -0.20 16 2 C 0.01 0.13 7.33 -82.10 -0.60 -0.47 16 3 C -0.22 -2.39 11.06 -39.38 -0.44 -2.83 16 4 C -0.02 -0.24 7.00 -35.31 -0.25 -0.49 16 5 C 0.14 1.54 6.25 -4.98 -0.03 1.51 16 6 N -0.69 -9.49 6.49 -115.06 -0.75 -10.24 16 7 C 0.06 1.03 5.14 -3.82 -0.02 1.01 16 8 C -0.08 -1.67 2.54 -90.63 -0.23 -1.90 16 9 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 10 C -0.14 -2.48 8.78 37.16 0.33 -2.15 16 11 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 12 C -0.51 -14.22 8.41 -34.44 -0.29 -14.51 16 13 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 O 0.09 1.27 11.20 17.16 0.19 1.46 16 21 N -0.37 -5.08 12.07 33.43 0.40 -4.68 16 22 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 26 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.34 4.74 6.98 -39.29 -0.27 4.47 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 33 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 304.37 15.07 4.59 4.59 Total: -1.00 -30.49 304.37 -6.78 -37.27 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.56 Total: -1.00 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -1.37 Total: -17.96 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.39 Total: -40.90 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.19 Total: 1.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.49 -6.78 -37.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602594850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.703 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds