Wall clock time and date at job start Sun Mar 29 2020 22:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41383 * 126.80151 * 2 1 4 4 C 1.35450 * 103.98987 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.78011 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47318 * 89.99553 * 5 4 3 7 7 C 1.46910 * 111.00178 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47127 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47103 * 304.99844 * 8 7 6 10 10 C 1.52997 * 109.47482 * 65.00091 * 8 7 6 11 11 C 1.52999 * 109.46961 * 185.00452 * 8 7 6 12 12 C 1.50704 * 109.47137 * 175.00116 * 11 8 7 13 13 H 1.07991 * 120.00119 * 359.97438 * 12 11 8 14 14 C 1.37875 * 119.99876 * 179.97438 * 12 11 8 15 15 N 1.31519 * 120.00278 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00180 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46784 * 59.99793 * 16 14 12 18 18 H 1.48494 * 109.47471 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47106 * 300.00138 * 16 14 12 20 20 O 1.34044 * 106.44701 * 0.23782 * 4 3 2 21 21 N 1.20932 * 111.56117 * 359.56685 * 20 4 3 22 22 H 1.09000 * 109.47026 * 90.00157 * 1 2 3 23 23 H 1.09007 * 109.46438 * 209.99788 * 1 2 3 24 24 H 1.08992 * 109.47319 * 329.99772 * 1 2 3 25 25 H 1.08002 * 128.00456 * 0.03462 * 3 2 1 26 26 H 1.09005 * 109.47095 * 329.99313 * 5 4 3 27 27 H 1.09006 * 109.47400 * 209.99953 * 5 4 3 28 28 H 1.00899 * 111.00038 * 56.05120 * 6 5 4 29 29 H 1.08996 * 109.46545 * 59.99934 * 7 6 5 30 30 H 1.09001 * 109.46699 * 300.00610 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99783 * 10 8 7 32 32 H 1.09001 * 109.46832 * 299.99974 * 10 8 7 33 33 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 34 34 H 1.09006 * 109.47194 * 294.99813 * 11 8 7 35 35 H 1.08997 * 109.47756 * 54.99294 * 11 8 7 36 36 H 0.96996 * 120.00275 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6069 -0.0006 5 6 4.9021 1.3697 -0.0014 6 7 5.3251 1.6178 1.3833 7 6 6.5914 2.3617 1.4217 8 6 6.9989 2.6000 2.8770 9 1 6.1859 3.0984 3.4050 10 6 7.2971 1.2585 3.5494 11 6 8.2494 3.4806 2.9187 12 6 8.5796 3.8167 4.3502 13 1 7.9594 3.4403 5.1501 14 6 9.6736 4.6047 4.6386 15 7 10.4293 5.0627 3.6645 16 14 10.0825 5.0219 6.4129 17 1 10.3326 3.7696 7.1708 18 1 11.2970 5.8754 6.4535 19 1 8.9433 5.7518 7.0249 20 8 3.4539 -0.7252 -0.0062 21 7 2.2869 -1.0423 -0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3632 -0.8901 0.5139 24 1 -0.3633 0.8899 0.5138 25 1 2.0709 2.1743 0.0005 26 1 4.7647 2.3211 -0.5154 27 1 5.6657 0.7860 -0.5156 28 1 5.3971 0.7540 1.8997 29 1 6.4652 3.3199 0.9177 30 1 7.3668 1.7852 0.9172 31 1 8.1101 0.7601 3.0213 32 1 6.4062 0.6312 3.5196 33 1 7.5879 1.4283 4.5861 34 1 9.0858 2.9454 2.4690 35 1 8.0653 4.3998 2.3628 36 1 11.1991 5.6168 3.8674 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602594850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:07 Heat of formation + Delta-G solvation = 19.116226 kcal Electronic energy + Delta-G solvation = -16266.859940 eV Core-core repulsion = 13559.779102 eV Total energy + Delta-G solvation = -2707.080838 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.87764 -38.56314 -36.05052 -35.66790 -34.24544 -32.38174 -29.55257 -28.99145 -27.68514 -25.96165 -24.05997 -23.83100 -21.16957 -20.55406 -18.64311 -18.52587 -18.14740 -17.01733 -16.59060 -15.74687 -15.66275 -15.14418 -14.63681 -14.24790 -14.18713 -14.09415 -13.91261 -13.72668 -13.29986 -13.27068 -13.00701 -12.74824 -12.54461 -12.22707 -12.02754 -11.93081 -11.47488 -11.06472 -10.99035 -10.93114 -10.50489 -10.42595 -9.44365 -8.15504 -6.24064 0.44695 1.28778 1.41923 1.44048 1.51720 2.10733 2.43883 3.18168 3.29759 3.31561 3.52283 4.04780 4.18040 4.25162 4.29284 4.40786 4.48855 4.61440 4.68741 4.71540 4.80457 4.87104 4.93595 4.96346 5.05910 5.25964 5.27969 5.39725 5.50691 5.57292 5.80922 5.91581 5.97653 6.32072 6.34497 6.92038 7.28390 7.44059 8.96204 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.055293 B = 0.003637 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.267945 B = 7697.482278 C = 7802.148179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.009 3.991 3 C -0.215 4.215 4 C -0.027 4.027 5 C 0.140 3.860 6 N -0.688 5.688 7 C 0.077 3.923 8 C -0.077 4.077 9 H 0.057 0.943 10 C -0.129 4.129 11 C 0.033 3.967 12 C -0.530 4.530 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.958 3.042 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.268 1.268 20 O 0.075 5.925 21 N -0.400 5.400 22 H 0.094 0.906 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.193 0.807 26 H 0.121 0.879 27 H 0.063 0.937 28 H 0.345 0.655 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.043 0.957 34 H -0.008 1.008 35 H -0.009 1.009 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.581 -7.974 -8.341 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.150 4.150 3 C -0.237 4.237 4 C -0.091 4.091 5 C 0.011 3.989 6 N -0.321 5.321 7 C -0.051 4.051 8 C -0.096 4.096 9 H 0.076 0.924 10 C -0.186 4.186 11 C -0.004 4.004 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.783 3.217 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.193 1.193 20 O 0.013 5.987 21 N -0.109 5.109 22 H 0.113 0.887 23 H 0.094 0.906 24 H 0.119 0.881 25 H 0.211 0.789 26 H 0.139 0.861 27 H 0.082 0.918 28 H 0.164 0.836 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.010 0.990 35 H 0.009 0.991 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.018 -8.638 -8.314 20.817 hybrid contribution 1.252 0.525 0.567 1.471 sum -15.765 -8.114 -7.747 19.349 Atomic orbital electron populations 1.20321 0.83638 1.04745 1.04498 1.24273 1.00646 0.88631 1.01433 1.22780 0.90602 1.02058 1.08255 1.24654 0.99167 0.82990 1.02300 1.20454 0.88521 0.98728 0.91247 1.60561 1.32550 1.26703 1.12249 1.21897 0.88460 0.97959 0.96810 1.21026 0.97445 0.96452 0.94642 0.92423 1.21673 1.00210 0.96174 1.00592 1.18996 0.92530 0.93529 0.95372 1.21634 1.10879 1.30370 0.93973 0.92241 1.25911 0.96398 0.96079 1.01442 1.70081 1.17621 1.36177 1.33667 0.85606 0.77620 0.78393 0.80073 1.19357 1.21068 1.19320 1.84768 1.21759 1.23835 1.68334 1.73834 0.89749 1.25516 1.21806 0.88742 0.90644 0.88057 0.78938 0.86063 0.91846 0.83617 0.91018 0.94883 0.93858 0.91890 0.93743 0.98992 0.99055 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.47 71.23 0.75 -0.24 16 2 C 0.01 0.19 7.33 43.58 0.32 0.51 16 3 C -0.22 -4.30 11.06 22.40 0.25 -4.05 16 4 C -0.03 -0.61 7.00 25.04 0.18 -0.43 16 5 C 0.14 2.86 6.25 85.56 0.53 3.39 16 6 N -0.69 -17.72 6.49 -517.93 -3.36 -21.08 16 7 C 0.08 2.40 5.14 86.30 0.44 2.84 16 8 C -0.08 -3.00 2.54 -10.80 -0.03 -3.03 16 9 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 10 C -0.13 -4.60 8.78 71.98 0.63 -3.97 16 11 C 0.03 1.70 4.45 29.85 0.13 1.83 16 12 C -0.53 -29.62 8.41 25.60 0.22 -29.40 16 13 H 0.06 3.20 7.06 -2.92 -0.02 3.18 16 14 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 15 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 16 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 O 0.08 1.97 11.20 71.58 0.80 2.77 16 21 N -0.40 -10.65 12.07 -49.53 -0.60 -11.25 16 22 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 26 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 27 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.34 8.81 6.98 -89.69 -0.63 8.18 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.84 6.68 -2.39 -0.02 1.83 16 33 H 0.04 1.74 6.95 -2.38 -0.02 1.72 16 34 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -65.76 304.37 3.47 -62.29 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.43 Total: 9.46 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: 3.88 Total: -32.14 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -3.67 Total: -88.59 kcal Atomic # 8 Polarization: 1.97 SS G_CDS: 0.80 Total: 2.77 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -65.76 3.47 -62.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602594850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.408 kcal (2) G-P(sol) polarization free energy of solvation -65.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds