Wall clock time and date at job start Sun Mar 29 2020 22:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30175 * 126.80806 * 2 1 4 4 O 1.20919 * 111.60759 * 180.02562 * 3 2 1 5 5 C 1.34037 * 111.56942 * 359.76596 * 4 3 2 6 6 C 1.35454 * 106.44331 * 0.37513 * 5 4 3 7 7 C 1.50705 * 128.00415 * 179.90929 * 6 5 4 8 8 N 1.46891 * 109.47163 * 259.68091 * 7 6 5 9 9 C 1.46900 * 110.99776 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47303 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46505 * 304.99837 * 10 9 8 12 12 C 1.52997 * 109.47127 * 64.99966 * 10 9 8 13 13 C 1.52992 * 109.47223 * 185.00471 * 10 9 8 14 14 C 1.50697 * 109.47463 * 174.99857 * 13 10 9 15 15 H 1.08007 * 119.99713 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00558 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99931 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99729 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46906 * 89.99823 * 18 16 14 20 20 H 1.48494 * 109.47218 * 209.99865 * 18 16 14 21 21 H 1.48504 * 109.47120 * 330.00170 * 18 16 14 22 22 H 1.09003 * 109.47183 * 269.97297 * 1 2 3 23 23 H 1.09006 * 109.47323 * 29.97115 * 1 2 3 24 24 H 1.08997 * 109.47659 * 149.96941 * 1 2 3 25 25 H 1.08000 * 126.77730 * 180.29119 * 5 4 3 26 26 H 1.09008 * 109.46338 * 139.68345 * 7 6 5 27 27 H 1.09001 * 109.47157 * 19.68857 * 7 6 5 28 28 H 1.00900 * 111.00730 * 303.95428 * 8 7 6 29 29 H 1.09007 * 109.47006 * 60.00373 * 9 8 7 30 30 H 1.08996 * 109.47541 * 300.00579 * 9 8 7 31 31 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 32 32 H 1.09001 * 109.46832 * 60.00321 * 12 10 9 33 33 H 1.09004 * 109.47261 * 300.00303 * 12 10 9 34 34 H 1.09002 * 109.46906 * 294.99936 * 13 10 9 35 35 H 1.09006 * 109.47717 * 54.99311 * 13 10 9 36 36 H 0.97002 * 119.99493 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4537 0.7252 -0.0005 5 6 3.6024 -0.6069 0.0042 6 6 2.3539 -1.1321 -0.0006 7 6 1.9590 -2.5865 -0.0002 8 7 1.5973 -2.9960 -1.3637 9 6 1.2054 -4.4113 -1.4018 10 6 0.8372 -4.8002 -2.8350 11 1 0.0665 -4.1256 -3.2079 12 6 2.0774 -4.6997 -3.7253 13 6 0.3105 -6.2365 -2.8544 14 6 -0.1665 -6.5780 -4.2425 15 1 -0.1002 -5.8441 -5.0321 16 6 -0.6866 -7.8277 -4.5048 17 7 -1.1024 -8.1258 -5.7164 18 14 -0.7994 -9.0978 -3.1397 19 1 -2.1092 -8.9701 -2.4517 20 1 -0.6752 -10.4595 -3.7189 21 1 0.2966 -8.8734 -2.1631 22 1 -0.3634 -0.0005 1.0277 23 1 -0.3634 0.8903 -0.5134 24 1 -0.3634 -0.8897 -0.5143 25 1 4.5339 -1.1535 0.0093 26 1 1.1045 -2.7307 0.6612 27 1 2.7960 -3.1902 0.3507 28 1 0.8663 -2.4086 -1.7360 29 1 0.3456 -4.5678 -0.7502 30 1 2.0368 -5.0279 -1.0605 31 1 1.8150 -4.9764 -4.7465 32 1 2.8480 -5.3744 -3.3523 33 1 2.4526 -3.6764 -3.7115 34 1 1.1090 -6.9202 -2.5661 35 1 -0.5182 -6.3292 -2.1523 36 1 -1.4686 -9.0049 -5.9008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602675817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:11 Heat of formation + Delta-G solvation = 41.366652 kcal Electronic energy + Delta-G solvation = -16510.330044 eV Core-core repulsion = 13804.214057 eV Total energy + Delta-G solvation = -2706.115987 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.04258 -37.38155 -35.43613 -33.73571 -32.32158 -31.42180 -28.90319 -27.75298 -26.56867 -24.38270 -22.01445 -21.56433 -21.41852 -19.17530 -17.69197 -17.51359 -16.77386 -15.58950 -15.12194 -14.80177 -14.18065 -13.97389 -13.55943 -13.45317 -13.23065 -12.76346 -12.55568 -12.48412 -12.17786 -11.75908 -11.68645 -11.14247 -10.96561 -10.72917 -10.41570 -10.04829 -9.94327 -9.71730 -9.67498 -9.37422 -9.07654 -8.52557 -8.29698 -6.02795 -3.99907 1.37600 2.04231 3.13342 3.29954 3.37877 3.40969 3.99910 4.37533 4.44072 4.45742 4.79028 4.88941 5.26003 5.27238 5.30578 5.37062 5.50687 5.52546 5.61180 5.67740 5.75638 5.96674 5.98606 6.25289 6.37466 6.55536 6.81637 7.00557 7.09943 7.17424 7.26772 7.43066 7.50014 7.81692 8.13782 8.56524 9.02988 9.59944 11.10669 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047053 B = 0.004140 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.925801 B = 6761.138976 C = 6799.333632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.045 4.045 6 C -0.193 4.193 7 C 0.133 3.867 8 N -0.682 5.682 9 C 0.061 3.939 10 C -0.074 4.074 11 H 0.059 0.941 12 C -0.125 4.125 13 C -0.009 4.009 14 C -0.513 4.513 15 H 0.074 0.926 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.217 0.783 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.340 0.660 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.016 0.984 35 H 0.008 0.992 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 13.076 13.782 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.127 4.127 6 C -0.197 4.197 7 C 0.004 3.996 8 N -0.313 5.313 9 C -0.068 4.068 10 C -0.093 4.093 11 H 0.078 0.922 12 C -0.182 4.182 13 C -0.047 4.047 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.706 3.294 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.233 0.767 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.158 0.842 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.026 0.974 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.305 14.118 13.490 20.849 hybrid contribution -1.019 -1.685 1.026 2.221 sum 6.287 12.432 14.517 20.120 Atomic orbital electron populations 1.20172 0.86097 1.03939 1.03260 1.23539 0.98970 0.88586 1.02735 1.73827 0.89504 1.24257 1.20006 1.84799 1.21511 1.23194 1.67511 1.25805 1.00844 0.83326 1.02695 1.21248 0.92371 0.97357 1.08707 1.20113 1.00382 0.87985 0.91125 1.60564 1.46842 1.04734 1.19194 1.22221 0.98546 0.87194 0.98812 1.21010 0.97586 0.98842 0.91840 0.92224 1.21599 0.96621 0.99641 1.00333 1.19612 0.95482 0.91807 0.97780 1.21132 1.40135 0.99398 0.94480 0.90833 1.25031 0.94998 0.98276 0.95276 1.69917 1.42737 1.21750 1.20008 0.86806 0.78834 0.80997 0.82779 1.20444 1.21460 1.19075 0.90271 0.90378 0.90102 0.76699 0.94030 0.89784 0.84245 0.95587 0.91302 0.92209 0.94174 0.93725 0.96576 0.97382 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.39 36.00 0.37 -0.33 16 2 C 0.02 0.24 7.33 -82.10 -0.60 -0.36 16 3 N -0.37 -4.76 12.07 33.42 0.40 -4.36 16 4 O 0.09 1.08 11.20 17.18 0.19 1.27 16 5 C -0.04 -0.42 12.26 29.74 0.36 -0.05 16 6 C -0.19 -2.06 5.84 -104.42 -0.61 -2.67 16 7 C 0.13 1.41 6.17 -4.98 -0.03 1.38 16 8 N -0.68 -8.84 5.94 -115.05 -0.68 -9.53 16 9 C 0.06 0.92 5.07 -3.82 -0.02 0.90 16 10 C -0.07 -1.40 2.48 -90.62 -0.22 -1.63 16 11 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 12 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 13 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 14 C -0.51 -14.36 8.96 -34.44 -0.31 -14.67 16 15 H 0.07 2.22 7.30 -52.48 -0.38 1.83 16 16 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 18 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 0.69 7.78 -51.93 -0.40 0.29 16 25 H 0.22 1.20 8.06 -52.49 -0.42 0.78 16 26 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.34 4.36 8.36 -39.29 -0.33 4.03 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 34 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 35 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 302.20 15.07 4.55 4.55 Total: -1.00 -31.40 302.20 -5.97 -37.37 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.62 Total: -1.21 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -0.92 Total: -17.95 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.49 Total: -40.93 kcal Atomic # 8 Polarization: 1.08 SS G_CDS: 0.19 Total: 1.27 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.40 -5.97 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602675817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.740 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds