Wall clock time and date at job start Sun Mar 29 2020 22:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30175 * 126.80806 * 2 1 4 4 O 1.20919 * 111.60759 * 180.02562 * 3 2 1 5 5 C 1.34037 * 111.56942 * 359.76596 * 4 3 2 6 6 C 1.35454 * 106.44331 * 0.37513 * 5 4 3 7 7 C 1.50705 * 128.00415 * 179.90929 * 6 5 4 8 8 N 1.46891 * 109.47163 * 259.68091 * 7 6 5 9 9 C 1.46900 * 110.99776 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47303 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46505 * 304.99837 * 10 9 8 12 12 C 1.52997 * 109.47127 * 64.99966 * 10 9 8 13 13 C 1.52992 * 109.47223 * 185.00471 * 10 9 8 14 14 C 1.50697 * 109.47463 * 174.99857 * 13 10 9 15 15 H 1.08007 * 119.99713 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00558 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99931 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99729 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46906 * 89.99823 * 18 16 14 20 20 H 1.48494 * 109.47218 * 209.99865 * 18 16 14 21 21 H 1.48504 * 109.47120 * 330.00170 * 18 16 14 22 22 H 1.09003 * 109.47183 * 269.97297 * 1 2 3 23 23 H 1.09006 * 109.47323 * 29.97115 * 1 2 3 24 24 H 1.08997 * 109.47659 * 149.96941 * 1 2 3 25 25 H 1.08000 * 126.77730 * 180.29119 * 5 4 3 26 26 H 1.09008 * 109.46338 * 139.68345 * 7 6 5 27 27 H 1.09001 * 109.47157 * 19.68857 * 7 6 5 28 28 H 1.00900 * 111.00730 * 303.95428 * 8 7 6 29 29 H 1.09007 * 109.47006 * 60.00373 * 9 8 7 30 30 H 1.08996 * 109.47541 * 300.00579 * 9 8 7 31 31 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 32 32 H 1.09001 * 109.46832 * 60.00321 * 12 10 9 33 33 H 1.09004 * 109.47261 * 300.00303 * 12 10 9 34 34 H 1.09002 * 109.46906 * 294.99936 * 13 10 9 35 35 H 1.09006 * 109.47717 * 54.99311 * 13 10 9 36 36 H 0.97002 * 119.99493 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4537 0.7252 -0.0005 5 6 3.6024 -0.6069 0.0042 6 6 2.3539 -1.1321 -0.0006 7 6 1.9590 -2.5865 -0.0002 8 7 1.5973 -2.9960 -1.3637 9 6 1.2054 -4.4113 -1.4018 10 6 0.8372 -4.8002 -2.8350 11 1 0.0665 -4.1256 -3.2079 12 6 2.0774 -4.6997 -3.7253 13 6 0.3105 -6.2365 -2.8544 14 6 -0.1665 -6.5780 -4.2425 15 1 -0.1002 -5.8441 -5.0321 16 6 -0.6866 -7.8277 -4.5048 17 7 -1.1024 -8.1258 -5.7164 18 14 -0.7994 -9.0978 -3.1397 19 1 -2.1092 -8.9701 -2.4517 20 1 -0.6752 -10.4595 -3.7189 21 1 0.2966 -8.8734 -2.1631 22 1 -0.3634 -0.0005 1.0277 23 1 -0.3634 0.8903 -0.5134 24 1 -0.3634 -0.8897 -0.5143 25 1 4.5339 -1.1535 0.0093 26 1 1.1045 -2.7307 0.6612 27 1 2.7960 -3.1902 0.3507 28 1 0.8663 -2.4086 -1.7360 29 1 0.3456 -4.5678 -0.7502 30 1 2.0368 -5.0279 -1.0605 31 1 1.8150 -4.9764 -4.7465 32 1 2.8480 -5.3744 -3.3523 33 1 2.4526 -3.6764 -3.7115 34 1 1.1090 -6.9202 -2.5661 35 1 -0.5182 -6.3292 -2.1523 36 1 -1.4686 -9.0049 -5.9008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602675817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:11 Heat of formation + Delta-G solvation = 20.403583 kcal Electronic energy + Delta-G solvation = -16511.239071 eV Core-core repulsion = 13804.214057 eV Total energy + Delta-G solvation = -2707.025014 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.86579 -38.56124 -36.59946 -35.03931 -33.98018 -32.54908 -29.72188 -29.45438 -27.75291 -25.76452 -23.64588 -22.40558 -22.20826 -20.72708 -18.92360 -18.53199 -18.29081 -16.62387 -16.45177 -15.99570 -15.57203 -15.42776 -14.83098 -14.41862 -14.20964 -14.13643 -13.69991 -13.55169 -13.34631 -13.25211 -12.94962 -12.80729 -12.41182 -12.10119 -11.92417 -11.76807 -11.42682 -11.24425 -11.04343 -10.80128 -10.71555 -10.40291 -9.29349 -8.24200 -6.26742 0.61701 1.23002 1.37716 1.39974 1.51561 2.39676 2.43540 3.11349 3.21371 3.45988 3.63789 4.02991 4.05718 4.23579 4.32987 4.51267 4.55786 4.61620 4.66713 4.80017 4.86473 4.91838 4.94677 4.98511 4.99597 5.13412 5.23528 5.41983 5.43477 5.57973 5.73321 5.75452 6.09295 6.36527 6.44026 6.81540 7.35559 7.36952 8.92754 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047053 B = 0.004140 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.925801 B = 6761.138976 C = 6799.333632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.012 3.988 3 N -0.402 5.402 4 O 0.083 5.917 5 C -0.030 4.030 6 C -0.210 4.210 7 C 0.139 3.861 8 N -0.686 5.686 9 C 0.075 3.925 10 C -0.071 4.071 11 H 0.047 0.953 12 C -0.116 4.116 13 C -0.007 4.007 14 C -0.520 4.520 15 H 0.032 0.968 16 C -0.001 4.001 17 N -0.956 5.956 18 Si 0.949 3.051 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.244 1.244 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.253 0.747 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.339 0.661 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.023 0.977 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.020 0.980 35 H 0.016 0.984 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.878 12.730 16.405 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 N -0.111 5.111 4 O 0.022 5.978 5 C -0.112 4.112 6 C -0.214 4.214 7 C 0.010 3.990 8 N -0.318 5.318 9 C -0.054 4.054 10 C -0.090 4.090 11 H 0.065 0.935 12 C -0.173 4.173 13 C -0.045 4.045 14 C -0.558 4.558 15 H 0.050 0.950 16 C -0.196 4.196 17 N -0.597 5.597 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.167 1.167 22 H 0.110 0.890 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.269 0.731 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.157 0.843 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.265 13.799 16.130 22.779 hybrid contribution -1.285 -1.497 0.128 1.977 sum 6.980 12.301 16.258 21.549 Atomic orbital electron populations 1.20256 0.84966 1.04150 1.04172 1.23976 0.99994 0.88763 1.01982 1.73829 0.90154 1.25323 1.21799 1.84766 1.21094 1.24322 1.67641 1.26525 1.01950 0.82526 1.00154 1.21333 0.92760 0.97234 1.10069 1.20116 1.01201 0.87961 0.89673 1.60501 1.46687 1.03498 1.21076 1.21928 0.99180 0.88685 0.95563 1.20893 0.97123 0.96133 0.94862 0.93461 1.21497 0.96771 1.00857 0.98192 1.19570 0.95742 0.94532 0.94623 1.21483 1.39656 0.98587 0.96039 0.94985 1.26031 0.94730 1.00915 0.97960 1.70085 1.44422 1.22561 1.22668 0.85670 0.79871 0.77527 0.79629 1.19324 1.21410 1.16687 0.88969 0.90461 0.89571 0.73069 0.93249 0.88297 0.84295 0.94848 0.90429 0.95783 0.93491 0.91821 0.96138 0.96536 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.39 71.23 0.74 -0.57 16 2 C 0.01 0.26 7.33 43.58 0.32 0.58 16 3 N -0.40 -9.99 12.07 -49.56 -0.60 -10.59 16 4 O 0.08 1.79 11.20 71.66 0.80 2.59 16 5 C -0.03 -0.47 12.26 67.18 0.82 0.35 16 6 C -0.21 -3.95 5.84 -19.73 -0.12 -4.06 16 7 C 0.14 2.48 6.17 85.56 0.53 3.01 16 8 N -0.69 -15.79 5.94 -517.91 -3.08 -18.87 16 9 C 0.08 2.05 5.07 86.31 0.44 2.48 16 10 C -0.07 -2.61 2.48 -10.79 -0.03 -2.64 16 11 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 12 C -0.12 -4.25 8.89 71.98 0.64 -3.61 16 13 C -0.01 -0.31 3.52 29.84 0.10 -0.20 16 14 C -0.52 -29.57 8.96 25.60 0.23 -29.34 16 15 H 0.03 2.02 7.30 -2.91 -0.02 2.00 16 16 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 17 N -0.96 -60.31 13.96 21.45 0.30 -60.01 16 18 Si 0.95 43.82 27.47 68.60 1.88 45.70 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 22 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.09 1.33 7.78 -2.39 -0.02 1.31 16 25 H 0.25 1.78 8.06 -2.91 -0.02 1.75 16 26 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.34 7.95 8.36 -89.69 -0.75 7.20 16 29 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.02 1.01 6.95 -2.39 -0.02 1.00 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 2.06 7.75 -2.38 -0.02 2.04 16 34 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 35 H 0.02 0.71 7.57 -2.38 -0.02 0.70 16 36 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -68.97 302.20 3.71 -65.26 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.25 Total: 9.49 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 4.14 Total: -33.58 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -3.38 Total: -89.47 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.80 Total: 2.59 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -68.97 3.71 -65.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602675817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.663 kcal (2) G-P(sol) polarization free energy of solvation -68.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds