Wall clock time and date at job start Sun Mar 29 2020 22:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30251 * 125.61827 * 2 1 4 4 C 1.34480 * 108.69978 * 180.14488 * 3 2 1 5 5 C 1.34333 * 107.66662 * 359.55233 * 4 3 2 6 6 C 1.50697 * 126.44380 * 180.24083 * 5 4 3 7 7 N 1.46900 * 109.46897 * 90.00824 * 6 5 4 8 8 C 1.46896 * 111.00207 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47529 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46853 * 55.00172 * 9 8 7 11 11 C 1.52995 * 109.46989 * 295.00324 * 9 8 7 12 12 C 1.53001 * 109.47418 * 174.99736 * 9 8 7 13 13 C 1.50700 * 109.47250 * 185.00119 * 12 9 8 14 14 H 1.08003 * 119.99790 * 0.02562 * 13 12 9 15 15 C 1.37870 * 120.00058 * 180.02562 * 13 12 9 16 16 N 1.31513 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00053 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47115 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47133 * 120.00054 * 17 15 13 20 20 H 1.48493 * 109.47044 * 239.99984 * 17 15 13 21 21 O 1.33964 * 125.61547 * 179.64538 * 2 1 3 22 22 H 1.08996 * 109.47453 * 270.35320 * 1 2 3 23 23 H 1.09007 * 109.46810 * 30.35028 * 1 2 3 24 24 H 1.08990 * 109.47048 * 150.34332 * 1 2 3 25 25 H 1.08002 * 126.17050 * 179.82616 * 4 3 2 26 26 H 1.08997 * 109.47389 * 210.00764 * 6 5 4 27 27 H 1.08997 * 109.47344 * 330.00999 * 6 5 4 28 28 H 1.00901 * 111.00009 * 303.95133 * 7 6 5 29 29 H 1.09005 * 109.47347 * 299.99978 * 8 7 6 30 30 H 1.09009 * 109.47483 * 59.99537 * 8 7 6 31 31 H 1.09000 * 109.47212 * 299.98866 * 11 9 8 32 32 H 1.08995 * 109.47753 * 59.99909 * 11 9 8 33 33 H 1.09008 * 109.46836 * 179.97438 * 11 9 8 34 34 H 1.09004 * 109.46951 * 305.00574 * 12 9 8 35 35 H 1.09003 * 109.46888 * 64.99954 * 12 9 8 36 36 H 0.97001 * 120.00620 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 -0.0032 5 6 3.5698 -0.6757 0.0048 6 6 4.7937 -1.5550 0.0098 7 7 5.1914 -1.8325 1.3965 8 6 6.3843 -2.6886 1.4407 9 6 6.7675 -2.9546 2.8979 10 1 5.9121 -3.3735 3.4278 11 6 7.1864 -1.6419 3.5628 12 6 7.9324 -3.9453 2.9462 13 6 8.2296 -4.3018 4.3800 14 1 7.6456 -3.8656 5.1770 15 6 9.2468 -5.1846 4.6743 16 7 9.9582 -5.7153 3.7038 17 14 9.6147 -5.6270 6.4515 18 1 8.6781 -4.9009 7.3464 19 1 9.4468 -7.0901 6.6423 20 1 11.0111 -5.2422 6.7785 21 8 2.2872 -1.0890 0.0067 22 1 -0.3634 0.0063 1.0276 23 1 -0.3633 0.8869 -0.5193 24 1 -0.3633 -0.8930 -0.5084 25 1 4.4158 1.3161 -0.0067 26 1 4.5695 -2.4927 -0.4985 27 1 5.6080 -1.0472 -0.5069 28 1 5.3423 -0.9759 1.9078 29 1 6.1716 -3.6343 0.9422 30 1 7.2096 -2.1883 0.9339 31 1 8.0419 -1.2230 3.0330 32 1 6.3565 -0.9361 3.5284 33 1 7.4590 -1.8314 4.6011 34 1 7.6654 -4.8472 2.3954 35 1 8.8144 -3.4914 2.4944 36 1 10.6742 -6.3362 3.9108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602689237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:41 Heat of formation + Delta-G solvation = -21.019750 kcal Electronic energy + Delta-G solvation = -16255.130901 eV Core-core repulsion = 13546.309637 eV Total energy + Delta-G solvation = -2708.821264 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.31239 -38.56903 -35.95119 -35.76357 -34.19953 -32.72666 -29.93729 -28.64371 -26.96972 -25.55046 -23.96729 -23.11182 -22.01626 -20.70382 -18.59255 -18.02137 -17.80247 -16.85831 -16.59705 -15.80168 -15.64603 -15.23964 -14.78680 -14.60364 -14.24959 -14.04599 -13.77884 -13.49342 -13.32013 -13.23327 -13.02283 -12.76403 -12.58580 -12.30528 -12.23075 -11.93275 -11.59437 -11.50210 -11.08149 -10.97650 -10.53457 -9.79464 -9.42086 -8.17471 -6.26119 0.40630 1.39879 1.40812 1.53437 1.63710 1.71357 2.42286 3.14171 3.16275 3.28259 3.80121 4.01434 4.09538 4.21321 4.27779 4.39093 4.49717 4.64163 4.66398 4.69844 4.76187 4.84446 5.02430 5.03434 5.06537 5.23585 5.36969 5.39270 5.48775 5.55312 5.78313 5.89348 5.95240 6.30999 6.35099 6.71630 6.90054 7.42178 8.94682 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.054201 B = 0.003646 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.475699 B = 7678.674939 C = 7777.708122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.183 3.817 3 N -0.516 5.516 4 C -0.043 4.043 5 C -0.047 4.047 6 C 0.143 3.857 7 N -0.693 5.693 8 C 0.078 3.922 9 C -0.077 4.077 10 H 0.053 0.947 11 C -0.128 4.128 12 C 0.033 3.967 13 C -0.529 4.529 14 H 0.059 0.941 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.960 3.040 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.279 1.279 21 O -0.211 6.211 22 H 0.106 0.894 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.202 0.798 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.347 0.653 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.044 0.956 34 H -0.012 1.012 35 H -0.006 1.006 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.438 11.803 -8.366 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.024 4.024 3 N -0.246 5.246 4 C -0.181 4.181 5 C -0.100 4.100 6 C 0.014 3.986 7 N -0.327 5.327 8 C -0.051 4.051 9 C -0.096 4.096 10 H 0.071 0.929 11 C -0.185 4.185 12 C -0.005 4.005 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.785 3.215 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.205 1.205 21 O -0.098 6.098 22 H 0.125 0.875 23 H 0.131 0.869 24 H 0.123 0.877 25 H 0.219 0.781 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.167 0.833 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.007 0.993 35 H 0.012 0.988 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.997 11.732 -8.327 21.515 hybrid contribution 1.649 -0.630 0.541 1.846 sum -14.347 11.102 -7.786 19.742 Atomic orbital electron populations 1.20529 0.78304 1.06481 1.06027 1.27319 0.98119 0.78142 0.98790 1.70453 1.02702 1.31190 1.20246 1.23449 0.95626 0.93209 1.05858 1.23510 0.83732 0.95293 1.07458 1.20323 0.89026 0.98191 0.91036 1.60478 1.37386 1.22144 1.12677 1.21880 0.89666 0.96636 0.96871 1.21031 0.97619 0.96448 0.94527 0.92853 1.21657 1.00137 0.96082 1.00610 1.19003 0.92839 0.93150 0.95470 1.21675 1.15875 1.25278 0.93851 0.92255 1.25923 0.96196 0.96221 1.01570 1.70095 1.22071 1.31716 1.33673 0.85476 0.78100 0.77975 0.79982 1.18700 1.20611 1.20482 1.84415 1.17199 1.38446 1.69766 0.87545 0.86853 0.87652 0.78144 0.89117 0.89381 0.83268 0.91788 0.94423 0.93534 0.91820 0.93725 0.99326 0.98763 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 71.24 0.75 0.11 16 2 C 0.18 4.07 8.34 88.35 0.74 4.80 16 3 N -0.52 -13.08 11.29 -303.82 -3.43 -16.51 16 4 C -0.04 -1.00 11.80 83.39 0.98 -0.01 16 5 C -0.05 -1.14 6.90 24.79 0.17 -0.97 16 6 C 0.14 3.24 6.23 85.56 0.53 3.77 16 7 N -0.69 -19.10 6.49 -517.93 -3.36 -22.46 16 8 C 0.08 2.53 5.14 86.30 0.44 2.98 16 9 C -0.08 -3.10 2.54 -10.79 -0.03 -3.13 16 10 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 11 C -0.13 -4.54 8.77 71.98 0.63 -3.91 16 12 C 0.03 1.71 4.45 29.85 0.13 1.84 16 13 C -0.53 -29.81 8.41 25.60 0.22 -29.59 16 14 H 0.06 3.24 7.06 -2.91 -0.02 3.22 16 15 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 16 N -0.93 -56.86 13.29 21.44 0.28 -56.57 16 17 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 O -0.21 -5.48 10.78 -3.73 -0.04 -5.52 16 22 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.35 8.94 6.97 -89.69 -0.63 8.31 16 29 H 0.06 2.16 8.14 -2.38 -0.02 2.15 16 30 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.85 6.68 -2.39 -0.02 1.83 16 33 H 0.04 1.75 6.95 -2.38 -0.02 1.73 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 36 H 0.26 14.97 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -68.93 304.85 0.95 -67.98 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.43 Total: 10.30 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 5.03 Total: -23.75 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -6.51 Total: -95.54 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.04 Total: -5.52 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -68.93 0.95 -67.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602689237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.965 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds