Wall clock time and date at job start Sun Mar 29 2020 22:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.47154 * 2 1 4 4 N 1.30179 * 126.80520 * 269.97635 * 3 2 1 5 5 O 1.20917 * 111.60318 * 180.02562 * 4 3 2 6 6 C 1.34038 * 111.57076 * 359.76430 * 5 4 3 7 7 C 1.50700 * 126.77608 * 180.28518 * 6 5 4 8 8 C 1.35452 * 106.44274 * 0.37932 * 6 5 4 9 9 C 1.50699 * 128.00263 * 179.91074 * 8 6 5 10 10 N 1.46895 * 109.47505 * 269.67943 * 9 8 6 11 11 C 1.46902 * 111.00561 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.46719 * 34.99912 * 11 10 9 13 13 C 1.52997 * 109.47094 * 275.00137 * 11 10 9 14 14 C 1.50697 * 109.47181 * 154.99698 * 11 10 9 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47262 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46882 * 119.99668 * 18 16 14 21 21 H 1.48493 * 109.47394 * 239.99732 * 18 16 14 22 22 H 1.08996 * 109.46985 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46351 * 299.99725 * 1 2 3 24 24 H 1.08997 * 109.46895 * 59.99272 * 1 2 3 25 25 H 1.09002 * 109.46351 * 240.00275 * 2 1 3 26 26 H 1.08997 * 109.47413 * 120.00632 * 2 1 3 27 27 H 1.09004 * 109.47337 * 270.10772 * 7 6 5 28 28 H 1.08996 * 109.47120 * 30.11260 * 7 6 5 29 29 H 1.09002 * 109.47023 * 150.11045 * 7 6 5 30 30 H 1.09004 * 109.47109 * 149.67957 * 9 8 6 31 31 H 1.09001 * 109.47475 * 29.67995 * 9 8 6 32 32 H 1.00906 * 111.00234 * 56.04535 * 10 9 8 33 33 H 1.09002 * 109.47153 * 299.99508 * 13 11 10 34 34 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 35 35 H 1.09004 * 109.47261 * 59.99681 * 13 11 10 36 36 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2928 2.1559 -1.0423 5 8 2.6821 3.2559 -0.7252 6 6 2.7267 3.3979 0.6069 7 6 3.1530 4.6257 1.3696 8 6 2.3149 2.2192 1.1320 9 6 2.1823 1.8472 2.5864 10 7 3.4445 1.2636 3.0597 11 6 3.3520 0.8875 4.4767 12 1 2.3441 0.5338 4.6937 13 6 3.6641 2.1051 5.3489 14 6 4.3432 -0.2088 4.7711 15 1 4.9786 -0.5879 3.9844 16 6 4.4389 -0.7278 6.0449 17 7 3.6655 -0.2658 7.0031 18 14 5.6680 -2.0862 6.4102 19 1 6.4139 -2.4250 5.1716 20 1 6.6215 -1.6243 7.4508 21 1 4.9464 -3.2886 6.8986 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 4.2263 4.5835 1.5555 28 1 2.9202 5.5156 0.7850 29 1 2.6210 4.6659 2.3201 30 1 1.3791 1.1197 2.7036 31 1 1.9529 2.7388 3.1700 32 1 4.2161 1.8945 2.9023 33 1 4.6721 2.4587 5.1319 34 1 3.5951 1.8261 6.4004 35 1 2.9471 2.8980 5.1359 36 1 3.7325 -0.6311 7.8991 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602862118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:49 Heat of formation + Delta-G solvation = 42.494931 kcal Electronic energy + Delta-G solvation = -17138.143515 eV Core-core repulsion = 14432.076454 eV Total energy + Delta-G solvation = -2706.067061 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.64050 -36.66873 -35.06047 -33.65075 -32.14848 -31.07742 -29.03766 -27.37907 -25.30243 -24.80935 -23.94329 -21.00242 -20.26556 -19.58323 -17.37439 -16.90178 -16.16067 -14.87093 -14.75085 -14.31255 -14.16035 -13.65301 -13.43379 -13.15434 -12.86693 -12.71123 -12.39906 -12.09867 -11.74758 -11.53311 -11.36796 -11.25936 -10.96292 -10.83065 -10.57558 -10.47721 -10.18313 -9.99097 -9.57282 -9.06621 -8.87050 -8.39338 -7.29390 -6.01405 -4.04593 1.70173 2.49585 3.30101 3.34308 3.38149 3.43747 4.39675 4.43549 4.68258 5.08889 5.17135 5.29464 5.30530 5.41815 5.44076 5.47008 5.52815 5.66672 5.78994 5.95008 5.98790 6.07759 6.19407 6.24614 6.31816 6.49014 6.63791 6.78656 7.03730 7.29913 7.69748 7.85461 8.22504 8.47505 8.54081 8.56363 9.03203 9.61134 11.05646 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027349 B = 0.006154 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.567536 B = 4549.072457 C = 5059.053539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.042 3.958 4 N -0.377 5.377 5 O 0.088 5.912 6 C -0.043 4.043 7 C -0.071 4.071 8 C -0.177 4.177 9 C 0.134 3.866 10 N -0.677 5.677 11 C 0.211 3.789 12 H 0.035 0.965 13 C -0.169 4.169 14 C -0.494 4.494 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.285 1.285 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.326 0.674 33 H 0.028 0.972 34 H 0.090 0.910 35 H 0.005 0.995 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 6.760 -9.704 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.117 4.117 4 N -0.083 5.083 5 O 0.025 5.975 6 C -0.107 4.107 7 C -0.128 4.128 8 C -0.181 4.181 9 C 0.005 3.995 10 N -0.307 5.307 11 C 0.104 3.896 12 H 0.053 0.947 13 C -0.229 4.229 14 C -0.533 4.533 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.211 1.211 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.142 0.858 33 H 0.047 0.953 34 H 0.108 0.892 35 H 0.024 0.976 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.399 5.893 -11.056 13.279 hybrid contribution 0.685 0.117 1.544 1.693 sum -3.714 6.010 -9.513 11.849 Atomic orbital electron populations 1.21700 0.94396 1.02084 1.01950 1.19964 0.95895 0.88425 1.04346 1.23388 1.01155 0.98901 0.88300 1.73767 1.17496 0.92935 1.24148 1.84738 1.63226 1.26993 1.22586 1.24202 1.03688 0.99051 0.83798 1.20292 1.02717 0.91351 0.98456 1.21148 1.06109 0.92681 0.98151 1.20146 0.95544 0.97753 0.86100 1.60847 1.02105 1.44748 1.22992 1.19204 0.97704 0.92624 0.80085 0.94748 1.22441 0.97149 0.97193 1.06094 1.21187 1.19746 1.17822 0.94553 0.91877 1.24941 0.96193 0.97120 0.96237 1.69884 1.39347 1.42680 1.01851 0.86465 0.81101 0.81791 0.78199 1.19743 1.21197 1.21113 0.91757 0.92319 0.92985 0.90607 0.88306 0.89488 0.90289 0.89237 0.90445 0.95023 0.85791 0.95288 0.89186 0.97622 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.90 37.16 0.37 -1.38 16 2 C -0.05 -0.69 6.44 -27.88 -0.18 -0.87 16 3 C 0.04 0.68 6.58 -82.10 -0.54 0.14 16 4 N -0.38 -6.35 12.07 33.42 0.40 -5.95 16 5 O 0.09 1.38 11.20 17.18 0.19 1.57 16 6 C -0.04 -0.62 7.49 -35.30 -0.26 -0.89 16 7 C -0.07 -0.74 10.30 36.01 0.37 -0.37 16 8 C -0.18 -2.86 5.83 -104.42 -0.61 -3.46 16 9 C 0.13 2.34 5.81 -4.98 -0.03 2.31 16 10 N -0.68 -13.90 6.22 -109.22 -0.68 -14.58 16 11 C 0.21 5.11 2.57 -68.87 -0.18 4.93 16 12 H 0.03 0.91 7.80 -51.93 -0.40 0.51 16 13 C -0.17 -3.89 8.94 37.16 0.33 -3.56 16 14 C -0.49 -13.41 8.84 -34.44 -0.30 -13.71 16 15 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 16 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 17 N -0.90 -25.20 11.32 55.43 0.63 -24.57 16 18 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.91 7.44 -51.93 -0.39 0.52 16 30 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 31 H 0.03 0.53 6.73 -51.93 -0.35 0.18 16 32 H 0.33 6.44 8.47 -39.29 -0.33 6.10 16 33 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 35 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -29.05 302.93 -6.56 -35.61 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.52 Total: 2.54 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.13 Total: -15.44 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.35 Total: -45.09 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.05 -6.56 -35.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.108 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds