Wall clock time and date at job start Sun Mar 29 2020 22:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.47154 * 2 1 4 4 N 1.30179 * 126.80520 * 269.97635 * 3 2 1 5 5 O 1.20917 * 111.60318 * 180.02562 * 4 3 2 6 6 C 1.34038 * 111.57076 * 359.76430 * 5 4 3 7 7 C 1.50700 * 126.77608 * 180.28518 * 6 5 4 8 8 C 1.35452 * 106.44274 * 0.37932 * 6 5 4 9 9 C 1.50699 * 128.00263 * 179.91074 * 8 6 5 10 10 N 1.46895 * 109.47505 * 269.67943 * 9 8 6 11 11 C 1.46902 * 111.00561 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.46719 * 34.99912 * 11 10 9 13 13 C 1.52997 * 109.47094 * 275.00137 * 11 10 9 14 14 C 1.50697 * 109.47181 * 154.99698 * 11 10 9 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47262 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46882 * 119.99668 * 18 16 14 21 21 H 1.48493 * 109.47394 * 239.99732 * 18 16 14 22 22 H 1.08996 * 109.46985 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46351 * 299.99725 * 1 2 3 24 24 H 1.08997 * 109.46895 * 59.99272 * 1 2 3 25 25 H 1.09002 * 109.46351 * 240.00275 * 2 1 3 26 26 H 1.08997 * 109.47413 * 120.00632 * 2 1 3 27 27 H 1.09004 * 109.47337 * 270.10772 * 7 6 5 28 28 H 1.08996 * 109.47120 * 30.11260 * 7 6 5 29 29 H 1.09002 * 109.47023 * 150.11045 * 7 6 5 30 30 H 1.09004 * 109.47109 * 149.67957 * 9 8 6 31 31 H 1.09001 * 109.47475 * 29.67995 * 9 8 6 32 32 H 1.00906 * 111.00234 * 56.04535 * 10 9 8 33 33 H 1.09002 * 109.47153 * 299.99508 * 13 11 10 34 34 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 35 35 H 1.09004 * 109.47261 * 59.99681 * 13 11 10 36 36 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2928 2.1559 -1.0423 5 8 2.6821 3.2559 -0.7252 6 6 2.7267 3.3979 0.6069 7 6 3.1530 4.6257 1.3696 8 6 2.3149 2.2192 1.1320 9 6 2.1823 1.8472 2.5864 10 7 3.4445 1.2636 3.0597 11 6 3.3520 0.8875 4.4767 12 1 2.3441 0.5338 4.6937 13 6 3.6641 2.1051 5.3489 14 6 4.3432 -0.2088 4.7711 15 1 4.9786 -0.5879 3.9844 16 6 4.4389 -0.7278 6.0449 17 7 3.6655 -0.2658 7.0031 18 14 5.6680 -2.0862 6.4102 19 1 6.4139 -2.4250 5.1716 20 1 6.6215 -1.6243 7.4508 21 1 4.9464 -3.2886 6.8986 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 4.2263 4.5835 1.5555 28 1 2.9202 5.5156 0.7850 29 1 2.6210 4.6659 2.3201 30 1 1.3791 1.1197 2.7036 31 1 1.9529 2.7388 3.1700 32 1 4.2161 1.8945 2.9023 33 1 4.6721 2.4587 5.1319 34 1 3.5951 1.8261 6.4004 35 1 2.9471 2.8980 5.1359 36 1 3.7325 -0.6311 7.8991 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602862118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:49 Heat of formation + Delta-G solvation = 24.734130 kcal Electronic energy + Delta-G solvation = -17138.913682 eV Core-core repulsion = 14432.076454 eV Total energy + Delta-G solvation = -2706.837227 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.86975 -38.23738 -36.43978 -35.04241 -33.85390 -32.24300 -30.63607 -28.55755 -27.23522 -26.33581 -25.09435 -22.35686 -22.09118 -20.74768 -18.60996 -18.54182 -17.77521 -16.75067 -16.14147 -15.62369 -15.52551 -15.13453 -14.80266 -14.27296 -14.10150 -13.92767 -13.61210 -13.49205 -13.34090 -13.06325 -12.82490 -12.70874 -12.48510 -12.40407 -12.23931 -12.12877 -11.90112 -11.68225 -11.04140 -10.80844 -10.46942 -10.09718 -8.95444 -8.08299 -6.18648 0.52797 1.24155 1.42238 1.45079 1.56486 2.22959 2.45629 3.20370 3.20934 3.56748 3.79943 3.87957 4.15250 4.24436 4.36153 4.43459 4.56674 4.64712 4.72859 4.75146 4.82361 4.88562 4.96747 4.99211 5.03761 5.12484 5.16644 5.23768 5.33212 5.44918 5.72626 5.85216 6.29614 6.65290 6.81126 6.96227 7.34169 7.51436 8.97067 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027349 B = 0.006154 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.567536 B = 4549.072457 C = 5059.053539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 C 0.033 3.967 4 N -0.396 5.396 5 O 0.086 5.914 6 C -0.024 4.024 7 C -0.073 4.073 8 C -0.204 4.204 9 C 0.145 3.855 10 N -0.681 5.681 11 C 0.218 3.782 12 H 0.006 0.994 13 C -0.157 4.157 14 C -0.513 4.513 15 H 0.051 0.949 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.955 3.045 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.282 1.282 22 H 0.082 0.918 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.331 0.669 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 7.538 -10.141 13.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 C -0.126 4.126 4 N -0.104 5.104 5 O 0.024 5.976 6 C -0.088 4.088 7 C -0.130 4.130 8 C -0.208 4.208 9 C 0.016 3.984 10 N -0.312 5.312 11 C 0.109 3.891 12 H 0.024 0.976 13 C -0.216 4.216 14 C -0.552 4.552 15 H 0.070 0.930 16 C -0.186 4.186 17 N -0.561 5.561 18 Si 0.782 3.218 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.208 1.208 22 H 0.101 0.899 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.149 0.851 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.096 6.687 -11.510 13.927 hybrid contribution 0.577 -0.076 1.640 1.740 sum -3.520 6.611 -9.869 12.390 Atomic orbital electron populations 1.21657 0.92726 1.03263 1.01788 1.20006 0.97340 0.87525 1.03830 1.23721 1.00849 0.99625 0.88413 1.73758 1.18641 0.93485 1.24549 1.84719 1.63052 1.26626 1.23209 1.24848 1.01058 0.99595 0.83294 1.20537 1.03396 0.90515 0.98519 1.21032 1.08593 0.93831 0.97333 1.19983 0.93630 0.97734 0.87081 1.60670 1.03829 1.45957 1.20723 1.18939 0.95249 0.92541 0.82325 0.97591 1.22239 0.98168 0.97381 1.03835 1.21470 1.20275 1.18996 0.94480 0.93041 1.25637 0.97761 0.99099 0.96147 1.69996 1.40415 1.43613 1.02092 0.85544 0.79085 0.79254 0.77934 1.19634 1.20583 1.20790 0.89949 0.92831 0.92689 0.89959 0.89864 0.88267 0.87596 0.88587 0.91439 0.93755 0.85149 0.94809 0.92060 0.94991 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.90 71.98 0.71 -2.50 16 2 C -0.05 -1.39 6.44 29.85 0.19 -1.20 16 3 C 0.03 1.05 6.58 43.57 0.29 1.34 16 4 N -0.40 -13.00 12.07 -49.57 -0.60 -13.60 16 5 O 0.09 2.55 11.20 71.66 0.80 3.36 16 6 C -0.02 -0.63 7.49 25.04 0.19 -0.44 16 7 C -0.07 -1.28 10.30 71.24 0.73 -0.55 16 8 C -0.20 -6.36 5.83 -19.74 -0.12 -6.47 16 9 C 0.15 4.94 5.81 85.56 0.50 5.43 16 10 N -0.68 -27.65 6.22 -499.47 -3.11 -30.76 16 11 C 0.22 10.55 2.57 44.17 0.11 10.66 16 12 H 0.01 0.33 7.80 -2.39 -0.02 0.31 16 13 C -0.16 -7.08 8.94 71.98 0.64 -6.44 16 14 C -0.51 -28.00 8.84 25.60 0.23 -27.77 16 15 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 16 C 0.01 0.64 5.30 84.66 0.45 1.09 16 17 N -0.92 -51.91 11.32 21.45 0.24 -51.67 16 18 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.62 7.44 -2.39 -0.02 1.60 16 30 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 31 H 0.04 1.40 6.73 -2.39 -0.02 1.38 16 32 H 0.33 12.72 8.47 -89.69 -0.76 11.96 16 33 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 34 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 35 H 0.03 1.23 7.45 -2.38 -0.02 1.21 16 36 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -61.49 302.93 3.60 -57.89 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.31 Total: 16.06 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 3.93 Total: -26.83 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -3.46 Total: -96.02 kcal Atomic # 8 Polarization: 2.55 SS G_CDS: 0.80 Total: 3.36 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -61.49 3.60 -57.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.621 kcal (2) G-P(sol) polarization free energy of solvation -61.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds