Wall clock time and date at job start Sun Mar 29 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 C 1.53002 * 109.47463 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47161 * 179.97438 * 4 3 2 6 6 N 1.39143 * 124.44026 * 269.97192 * 5 4 3 7 7 C 1.27570 * 113.16704 * 180.02562 * 6 5 4 8 8 C 1.50692 * 126.42025 * 180.02562 * 7 6 5 9 9 C 1.51446 * 107.16255 * 0.02562 * 7 6 5 10 10 H 1.09005 * 110.60245 * 241.48654 * 9 7 6 11 11 C 1.52999 * 110.60823 * 118.51695 * 9 7 6 12 12 C 1.50695 * 109.47185 * 179.41798 * 11 9 7 13 13 H 1.07999 * 120.00381 * 359.97438 * 12 11 9 14 14 C 1.37878 * 120.00011 * 180.02562 * 12 11 9 15 15 N 1.31513 * 119.99950 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99904 * 359.97438 * 14 12 11 17 17 H 1.48491 * 109.47302 * 90.00223 * 16 14 12 18 18 H 1.48505 * 109.47038 * 210.00373 * 16 14 12 19 19 H 1.48508 * 109.47068 * 329.99940 * 16 14 12 20 20 C 1.34950 * 124.43389 * 90.00564 * 5 4 3 21 21 O 1.21298 * 127.50623 * 359.97438 * 20 5 4 22 22 H 1.09000 * 109.47202 * 60.00029 * 1 2 3 23 23 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47445 * 299.99909 * 1 2 3 25 25 H 1.08995 * 109.47004 * 240.00250 * 2 1 3 26 26 H 1.09000 * 109.47202 * 119.99971 * 2 1 3 27 27 H 1.09000 * 109.46944 * 59.99783 * 3 2 1 28 28 H 1.09000 * 109.47116 * 300.00024 * 3 2 1 29 29 H 1.09009 * 109.46624 * 59.99647 * 4 3 2 30 30 H 1.09006 * 109.46884 * 300.00560 * 4 3 2 31 31 H 1.09000 * 109.47000 * 269.97653 * 8 7 6 32 32 H 1.09002 * 109.47320 * 29.97428 * 8 7 6 33 33 H 1.08997 * 109.47319 * 149.97517 * 8 7 6 34 34 H 1.09003 * 109.46611 * 299.41803 * 11 9 7 35 35 H 1.09003 * 109.47244 * 59.41463 * 11 9 7 36 36 H 0.97003 * 119.99611 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 7 4.3215 3.5649 -1.1478 7 6 4.7387 4.7445 -0.8990 8 6 5.1106 5.7946 -1.9138 9 6 4.7902 4.8918 0.6074 10 1 4.1196 5.6849 0.9384 11 6 6.2216 5.1656 1.0731 12 6 6.2411 5.3217 2.5718 13 1 5.3241 5.2348 3.1358 14 6 7.4293 5.5765 3.2231 15 7 7.4464 5.7123 4.5311 16 14 9.0152 5.7276 2.2476 17 1 9.2177 7.1434 1.8481 18 1 10.1567 5.2818 3.0864 19 1 8.9320 4.8775 1.0327 20 6 4.3121 3.5440 1.1127 21 8 4.1860 3.1902 2.2661 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9286 -0.8892 30 1 3.9329 0.9288 0.8909 31 1 6.1692 5.7053 -2.1577 32 1 4.5166 5.6538 -2.8168 33 1 4.9151 6.7842 -1.5009 34 1 6.8626 4.3320 0.7863 35 1 6.5863 6.0813 0.6076 36 1 8.2825 5.8912 4.9892 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603923908.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:40 Heat of formation + Delta-G solvation = -2.147920 kcal Electronic energy + Delta-G solvation = -17044.960339 eV Core-core repulsion = 14336.957419 eV Total energy + Delta-G solvation = -2708.002920 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76520 -36.78999 -35.99657 -33.73132 -32.58199 -30.71747 -29.84505 -27.34627 -26.29108 -23.57744 -21.84635 -21.12948 -20.09805 -18.95703 -16.88559 -16.15828 -15.65331 -15.40173 -14.57442 -14.34195 -14.22002 -13.63654 -13.27045 -13.22140 -13.02895 -12.65412 -12.48545 -12.24889 -11.90184 -11.72732 -11.60781 -11.34676 -11.21377 -11.13739 -10.80266 -10.62496 -10.44524 -10.05210 -9.61654 -9.43165 -8.78927 -8.51904 -8.13753 -6.01559 -4.00636 2.11105 2.82997 3.22855 3.28298 3.36864 3.37916 4.40057 4.43724 4.64616 4.84414 4.89329 5.02015 5.25059 5.29492 5.41838 5.53632 5.56867 5.66970 5.68564 5.70721 5.76147 5.83935 5.91136 6.00040 6.03401 6.17112 6.23722 6.29582 6.59077 6.84028 6.91902 7.08500 7.67992 8.16523 8.52948 8.55634 9.10044 9.57493 11.11840 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.006397 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.022329 B = 4375.976550 C = 4993.604649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.136 4.136 4 C 0.143 3.857 5 N -0.484 5.484 6 N -0.254 5.254 7 C 0.092 3.908 8 C -0.073 4.073 9 C -0.123 4.123 10 H 0.125 0.875 11 C 0.019 3.981 12 C -0.519 4.519 13 H 0.084 0.916 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.873 3.127 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.509 3.491 21 O -0.475 6.475 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.018 0.982 35 H 0.032 0.968 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 -5.396 -14.131 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.175 4.175 4 C 0.022 3.978 5 N -0.306 5.306 6 N -0.061 5.061 7 C -0.101 4.101 8 C -0.132 4.132 9 C -0.147 4.147 10 H 0.142 0.858 11 C -0.019 4.019 12 C -0.557 4.557 13 H 0.102 0.898 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.700 3.300 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.192 1.192 20 C 0.296 3.704 21 O -0.344 6.344 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.797 -6.432 -13.924 17.681 hybrid contribution 1.068 0.454 0.314 1.203 sum -7.728 -5.978 -13.610 16.754 Atomic orbital electron populations 1.21750 0.95739 1.01441 1.01892 1.21442 0.96028 0.96251 1.02182 1.22024 0.95346 0.97289 1.02818 1.21362 0.93704 0.79468 1.03290 1.49824 1.64227 1.13497 1.03054 1.74441 1.14187 1.05912 1.11530 1.25436 0.95063 0.93385 0.96220 1.20283 1.02567 0.94970 0.95383 1.21828 1.04065 0.97448 0.91321 0.85769 1.19330 0.87113 0.96985 0.98519 1.21083 0.96707 1.48655 0.89216 0.89827 1.24956 0.98627 0.94771 0.94725 1.69910 1.26915 1.49163 1.07600 0.86894 0.83811 0.78772 0.80523 1.20001 1.21241 1.19201 1.21331 0.76520 0.87503 0.85071 1.90759 1.50429 1.75826 1.17346 0.92824 0.92783 0.92672 0.91848 0.91696 0.91595 0.91499 0.89980 0.89587 0.89623 0.90456 0.89531 0.96423 0.95004 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.12 -1.23 5.93 -26.73 -0.16 -1.39 16 3 C -0.14 -1.75 5.54 -26.73 -0.15 -1.90 16 4 C 0.14 2.14 6.24 -4.04 -0.03 2.12 16 5 N -0.48 -8.98 3.54 -59.88 -0.21 -9.19 16 6 N -0.25 -4.36 12.02 35.53 0.43 -3.93 16 7 C 0.09 1.50 6.93 -78.73 -0.55 0.95 16 8 C -0.07 -0.83 10.49 36.00 0.38 -0.45 16 9 C -0.12 -2.49 3.01 -92.08 -0.28 -2.77 16 10 H 0.12 2.41 8.14 -51.93 -0.42 1.99 16 11 C 0.02 0.45 3.59 -27.89 -0.10 0.35 16 12 C -0.52 -14.98 8.91 -34.44 -0.31 -15.29 16 13 H 0.08 2.69 7.30 -52.49 -0.38 2.31 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 16 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 20 C 0.51 11.27 7.56 -10.43 -0.08 11.20 16 21 O -0.47 -12.32 16.62 5.54 0.09 -12.23 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 30 H 0.09 1.33 8.04 -51.93 -0.42 0.91 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 35 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 304.07 15.07 4.58 4.58 Total: -1.00 -34.19 304.07 -5.81 -39.99 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.81 Total: -2.39 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.99 Total: -6.23 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.99 Total: -40.54 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.19 -5.81 -39.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603923908.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.844 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds