Wall clock time and date at job start Sun Mar 29 2020 22:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 C 1.53002 * 109.47463 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47161 * 179.97438 * 4 3 2 6 6 N 1.39143 * 124.44026 * 269.97192 * 5 4 3 7 7 C 1.27570 * 113.16704 * 180.02562 * 6 5 4 8 8 C 1.50692 * 126.42025 * 180.02562 * 7 6 5 9 9 C 1.51446 * 107.16255 * 0.02562 * 7 6 5 10 10 H 1.09005 * 110.60245 * 241.48654 * 9 7 6 11 11 C 1.52999 * 110.60823 * 118.51695 * 9 7 6 12 12 C 1.50695 * 109.47185 * 179.41798 * 11 9 7 13 13 H 1.07999 * 120.00381 * 359.97438 * 12 11 9 14 14 C 1.37878 * 120.00011 * 180.02562 * 12 11 9 15 15 N 1.31513 * 119.99950 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99904 * 359.97438 * 14 12 11 17 17 H 1.48491 * 109.47302 * 90.00223 * 16 14 12 18 18 H 1.48505 * 109.47038 * 210.00373 * 16 14 12 19 19 H 1.48508 * 109.47068 * 329.99940 * 16 14 12 20 20 C 1.34950 * 124.43389 * 90.00564 * 5 4 3 21 21 O 1.21298 * 127.50623 * 359.97438 * 20 5 4 22 22 H 1.09000 * 109.47202 * 60.00029 * 1 2 3 23 23 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47445 * 299.99909 * 1 2 3 25 25 H 1.08995 * 109.47004 * 240.00250 * 2 1 3 26 26 H 1.09000 * 109.47202 * 119.99971 * 2 1 3 27 27 H 1.09000 * 109.46944 * 59.99783 * 3 2 1 28 28 H 1.09000 * 109.47116 * 300.00024 * 3 2 1 29 29 H 1.09009 * 109.46624 * 59.99647 * 4 3 2 30 30 H 1.09006 * 109.46884 * 300.00560 * 4 3 2 31 31 H 1.09000 * 109.47000 * 269.97653 * 8 7 6 32 32 H 1.09002 * 109.47320 * 29.97428 * 8 7 6 33 33 H 1.08997 * 109.47319 * 149.97517 * 8 7 6 34 34 H 1.09003 * 109.46611 * 299.41803 * 11 9 7 35 35 H 1.09003 * 109.47244 * 59.41463 * 11 9 7 36 36 H 0.97003 * 119.99611 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 7 4.3215 3.5649 -1.1478 7 6 4.7387 4.7445 -0.8990 8 6 5.1106 5.7946 -1.9138 9 6 4.7902 4.8918 0.6074 10 1 4.1196 5.6849 0.9384 11 6 6.2216 5.1656 1.0731 12 6 6.2411 5.3217 2.5718 13 1 5.3241 5.2348 3.1358 14 6 7.4293 5.5765 3.2231 15 7 7.4464 5.7123 4.5311 16 14 9.0152 5.7276 2.2476 17 1 9.2177 7.1434 1.8481 18 1 10.1567 5.2818 3.0864 19 1 8.9320 4.8775 1.0327 20 6 4.3121 3.5440 1.1127 21 8 4.1860 3.1902 2.2661 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9286 -0.8892 30 1 3.9329 0.9288 0.8909 31 1 6.1692 5.7053 -2.1577 32 1 4.5166 5.6538 -2.8168 33 1 4.9151 6.7842 -1.5009 34 1 6.8626 4.3320 0.7863 35 1 6.5863 6.0813 0.6076 36 1 8.2825 5.8912 4.9892 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603923908.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:39 Heat of formation + Delta-G solvation = -25.430018 kcal Electronic energy + Delta-G solvation = -17045.969927 eV Core-core repulsion = 14336.957419 eV Total energy + Delta-G solvation = -2709.012508 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.29739 -38.49250 -37.14307 -35.46750 -34.18097 -32.55006 -30.85413 -28.71041 -27.91154 -24.95105 -23.49133 -22.11822 -21.70170 -20.50126 -18.87941 -17.80235 -17.12911 -16.60579 -16.24080 -16.00295 -15.77118 -14.89370 -14.63760 -14.47760 -14.35431 -14.06505 -13.73743 -13.60932 -13.38786 -13.16608 -12.89013 -12.82596 -12.40323 -12.34904 -12.10447 -11.97575 -11.83207 -11.59412 -11.55833 -11.38686 -10.78381 -10.47235 -9.59863 -8.26623 -6.32612 0.67618 1.35325 1.39548 1.44410 1.49795 1.62445 2.36523 2.96816 3.09203 3.24836 3.80875 3.84600 3.98183 4.10325 4.21413 4.31292 4.42038 4.55548 4.63024 4.71211 4.81097 4.86181 4.92171 4.95793 5.00604 5.12492 5.16666 5.18119 5.26540 5.30939 5.39331 5.51953 5.63436 6.27161 6.70339 6.76413 6.93587 7.29743 8.91214 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.006397 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.022329 B = 4375.976550 C = 4993.604649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.134 3.866 5 N -0.482 5.482 6 N -0.259 5.259 7 C 0.117 3.883 8 C -0.075 4.075 9 C -0.132 4.132 10 H 0.127 0.873 11 C 0.027 3.973 12 C -0.528 4.528 13 H 0.028 0.972 14 C 0.002 3.998 15 N -0.954 5.954 16 Si 0.952 3.048 17 H -0.248 1.248 18 H -0.290 1.290 19 H -0.247 1.247 20 C 0.491 3.509 21 O -0.534 6.534 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.011 0.989 35 H 0.066 0.934 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.676 -5.111 -18.054 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.164 4.164 4 C 0.014 3.986 5 N -0.301 5.301 6 N -0.065 5.065 7 C -0.076 4.076 8 C -0.133 4.133 9 C -0.156 4.156 10 H 0.145 0.855 11 C -0.011 4.011 12 C -0.566 4.566 13 H 0.047 0.953 14 C -0.195 4.195 15 N -0.595 5.595 16 Si 0.775 3.225 17 H -0.172 1.172 18 H -0.216 1.216 19 H -0.170 1.170 20 C 0.279 3.721 21 O -0.407 6.407 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.029 0.971 35 H 0.084 0.916 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.959 -6.154 -17.919 20.550 hybrid contribution 0.703 0.362 1.569 1.756 sum -7.257 -5.792 -16.350 18.802 Atomic orbital electron populations 1.21748 0.94822 1.02456 1.01715 1.21437 0.96781 0.94232 1.03001 1.21925 0.93737 0.99088 1.01644 1.21670 0.95100 0.77929 1.03915 1.50004 1.63116 1.14470 1.02529 1.74544 1.15692 1.06178 1.10089 1.26086 0.93331 0.93839 0.94319 1.20615 1.04005 0.93832 0.94869 1.21812 1.02340 0.96728 0.94687 0.85533 1.19180 0.89102 0.97963 0.94878 1.21326 0.94906 1.48190 0.92183 0.95328 1.26068 1.03320 0.94221 0.95844 1.70105 1.28250 1.50982 1.10114 0.85642 0.77422 0.80405 0.79079 1.17207 1.21620 1.17021 1.21748 0.76360 0.88878 0.85087 1.90714 1.53173 1.77163 1.19680 0.92202 0.91171 0.93699 0.89878 0.92017 0.94330 0.90982 0.87272 0.90928 0.87845 0.87694 0.87697 0.97109 0.91638 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.91 71.98 0.71 -1.84 16 2 C -0.12 -2.23 5.93 30.59 0.18 -2.05 16 3 C -0.13 -3.20 5.54 30.59 0.17 -3.03 16 4 C 0.13 3.97 6.24 86.38 0.54 4.51 16 5 N -0.48 -17.74 3.54 -461.65 -1.63 -19.37 16 6 N -0.26 -8.27 12.02 -40.85 -0.49 -8.76 16 7 C 0.12 3.45 6.93 46.83 0.32 3.78 16 8 C -0.08 -1.31 10.49 71.23 0.75 -0.56 16 9 C -0.13 -5.29 3.01 -11.74 -0.04 -5.33 16 10 H 0.13 4.97 8.14 -2.38 -0.02 4.95 16 11 C 0.03 1.25 3.59 29.85 0.11 1.36 16 12 C -0.53 -31.47 8.91 25.60 0.23 -31.25 16 13 H 0.03 1.96 7.30 -2.91 -0.02 1.94 16 14 C 0.00 0.10 5.47 84.65 0.46 0.56 16 15 N -0.95 -62.19 13.96 21.45 0.30 -61.89 16 16 Si 0.95 43.68 27.47 68.60 1.88 45.57 16 17 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 20 C 0.49 22.51 7.56 87.94 0.67 23.17 16 21 O -0.53 -29.69 16.62 -3.08 -0.05 -29.74 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 30 H 0.07 2.33 8.04 -2.38 -0.02 2.31 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 35 H 0.07 2.59 7.57 -2.39 -0.02 2.57 16 36 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -79.42 304.07 5.10 -74.33 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.99 Total: 10.54 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 4.10 Total: -10.67 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -1.83 Total: -90.02 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.05 Total: -29.74 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.57 kcal Total: -79.42 5.10 -74.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603923908.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.897 kcal (2) G-P(sol) polarization free energy of solvation -79.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds