Wall clock time and date at job start Sun Mar 29 2020 21:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99949 * 2 1 4 4 H 1.48497 * 109.46950 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46873 * 120.00207 * 3 2 1 6 6 H 1.48498 * 109.47014 * 240.00016 * 3 2 1 7 7 C 1.38944 * 119.99957 * 179.72744 * 2 1 3 8 8 H 1.07997 * 120.00200 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00533 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99576 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00218 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.46837 * 172.29655 * 12 10 9 14 14 C 1.47900 * 111.00212 * 294.94821 * 13 12 10 15 15 C 1.54004 * 107.05839 * 214.15669 * 14 13 12 16 16 C 1.54598 * 105.13769 * 1.22450 * 15 14 13 17 17 C 1.48536 * 110.99587 * 177.54950 * 13 12 10 18 18 H 1.09000 * 110.66710 * 41.29343 * 17 13 12 19 19 C 1.52994 * 110.66802 * 278.15654 * 17 13 12 20 20 C 1.53000 * 117.50098 * 6.18797 * 19 17 13 21 21 C 1.53004 * 117.49873 * 297.56274 * 19 17 13 22 22 H 0.97003 * 120.00118 * 179.97438 * 1 2 3 23 23 H 0.97008 * 119.99678 * 359.97438 * 9 7 2 24 24 H 1.08992 * 109.47132 * 292.30251 * 12 10 9 25 25 H 1.09003 * 109.46699 * 52.29552 * 12 10 9 26 26 H 1.08995 * 109.91892 * 333.50469 * 14 13 12 27 27 H 1.09002 * 109.91974 * 94.80608 * 14 13 12 28 28 H 1.08998 * 110.30655 * 120.13889 * 15 14 13 29 29 H 1.08996 * 110.30644 * 242.30914 * 15 14 13 30 30 H 1.08998 * 110.72502 * 140.31341 * 16 15 14 31 31 H 1.08997 * 110.72388 * 263.42288 * 16 15 14 32 32 H 1.09005 * 115.54858 * 151.89812 * 19 17 13 33 33 H 1.08994 * 117.49580 * 0.02562 * 20 19 17 34 34 H 1.09000 * 117.49517 * 145.01930 * 20 19 17 35 35 H 1.08995 * 117.49847 * 214.97437 * 21 19 17 36 36 H 1.08994 * 117.50209 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7464 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 0.0057 8 1 3.0888 -1.2033 0.0053 9 7 1.3234 -2.3906 0.0119 10 6 1.9972 -3.5579 0.0180 11 8 3.2101 -3.5578 0.0175 12 6 1.2437 -4.8629 0.0254 13 7 2.1874 -5.9742 -0.1546 14 6 2.8232 -5.9188 -1.4888 15 6 3.0465 -7.3731 -1.9436 16 6 2.4716 -8.2453 -0.8039 17 6 1.4868 -7.2825 -0.0939 18 1 0.5392 -7.2368 -0.6307 19 6 1.2663 -7.7101 1.3585 20 6 1.6424 -6.7105 2.4541 21 6 2.5075 -7.9507 2.2202 22 1 -0.4850 -0.8401 -0.0004 23 1 0.3533 -2.3906 0.0127 24 1 0.7247 -4.9774 0.9769 25 1 0.5174 -4.8677 -0.7875 26 1 2.1667 -5.4065 -2.1921 27 1 3.7793 -5.3994 -1.4233 28 1 2.5113 -7.5650 -2.8736 29 1 4.1108 -7.5705 -2.0710 30 1 1.9430 -9.1086 -1.2080 31 1 3.2626 -8.5623 -0.1244 32 1 0.4001 -8.3479 1.5344 33 1 2.0465 -5.7481 2.1401 34 1 1.0234 -6.6905 3.3510 35 1 2.4576 -8.7464 2.9635 36 1 3.4811 -7.8048 1.7524 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609417792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:51 Heat of formation + Delta-G solvation = -3.081161 kcal Electronic energy + Delta-G solvation = -17422.425783 eV Core-core repulsion = 14714.382395 eV Total energy + Delta-G solvation = -2708.043389 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71921 -37.87413 -35.75504 -34.23792 -32.01027 -30.93521 -28.59932 -26.54952 -24.08914 -22.84522 -22.21486 -20.61112 -19.52396 -19.03772 -17.85007 -16.72572 -16.03449 -15.58776 -14.81292 -14.39367 -14.18702 -13.70030 -13.48466 -13.29363 -12.84184 -12.44033 -12.04867 -11.96348 -11.22396 -11.17945 -11.08184 -10.99237 -10.89516 -10.77824 -10.42210 -10.19060 -10.08478 -9.82749 -9.72454 -9.49359 -8.45458 -8.01725 -7.94602 -6.72186 -3.85022 3.33214 3.36442 3.56835 3.88570 3.89301 4.08686 4.34105 4.68381 4.84395 4.96514 5.07323 5.14323 5.22846 5.27444 5.30271 5.43490 5.61310 5.70751 5.73828 5.84151 5.87741 5.92813 5.95605 6.06932 6.07997 6.20329 6.25252 6.39166 6.51432 6.60225 7.23740 7.26670 7.84386 8.11403 8.64312 8.84637 9.51633 9.93312 10.71369 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037662 B = 0.005815 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.268345 B = 4814.352058 C = 5115.315459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.010 4.010 3 Si 1.091 2.909 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.381 4.381 8 H 0.098 0.902 9 N -0.578 5.578 10 C 0.447 3.553 11 O -0.570 6.570 12 C 0.033 3.967 13 N -0.485 5.485 14 C 0.044 3.956 15 C -0.133 4.133 16 C -0.114 4.114 17 C 0.088 3.912 18 H 0.054 0.946 19 C -0.149 4.149 20 C -0.173 4.173 21 C -0.168 4.168 22 H 0.261 0.739 23 H 0.375 0.625 24 H 0.094 0.906 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -14.906 -0.335 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.212 4.212 3 Si 0.917 3.083 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.510 4.510 8 H 0.116 0.884 9 N -0.217 5.217 10 C 0.233 3.767 11 O -0.453 6.453 12 C -0.099 4.099 13 N -0.209 5.209 14 C -0.083 4.083 15 C -0.171 4.171 16 C -0.152 4.152 17 C -0.020 4.020 18 H 0.071 0.929 19 C -0.168 4.168 20 C -0.210 4.210 21 C -0.205 4.205 22 H 0.072 0.928 23 H 0.207 0.793 24 H 0.112 0.888 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.244 -13.158 0.070 13.217 hybrid contribution -1.199 -1.735 -0.629 2.201 sum 0.046 -14.893 -0.559 14.903 Atomic orbital electron populations 1.70899 1.06511 1.29338 1.47455 1.26487 0.96554 1.02589 0.95610 0.83136 0.74421 0.73690 0.77035 1.20439 1.21020 1.21076 1.20516 0.94614 0.83886 1.51973 0.88396 1.41952 1.08127 1.05552 1.66062 1.19674 0.88440 0.84261 0.84373 1.90517 1.13549 1.86869 1.54373 1.22169 0.94139 0.91593 1.01961 1.64402 1.26967 0.99861 1.29656 1.22809 1.01231 0.95663 0.88639 1.22454 1.01426 0.95237 0.97968 1.22492 0.98654 0.96924 0.97112 1.22271 0.95818 0.90003 0.93902 0.92851 1.22142 0.99197 1.04054 0.91403 1.23098 1.03117 0.96361 0.98410 1.22815 0.95749 0.99723 1.02187 0.92810 0.79256 0.88787 0.93847 0.94412 0.89025 0.91986 0.91181 0.91494 0.90412 0.88224 0.86604 0.89895 0.89810 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 13.68 55.50 0.76 -24.85 16 2 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16 3 Si 1.09 24.58 29.92 -169.99 -5.09 19.49 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.38 -10.84 9.68 -14.93 -0.14 -10.99 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.58 -14.82 5.28 -10.96 -0.06 -14.88 16 10 C 0.45 10.74 7.43 -10.98 -0.08 10.66 16 11 O -0.57 -15.68 14.64 5.55 0.08 -15.60 16 12 C 0.03 0.61 4.35 -4.98 -0.02 0.59 16 13 N -0.48 -8.21 3.64 -224.05 -0.82 -9.03 16 14 C 0.04 0.74 5.64 -2.75 -0.02 0.73 16 15 C -0.13 -1.68 6.93 -25.37 -0.18 -1.85 16 16 C -0.11 -1.34 6.43 -24.86 -0.16 -1.50 16 17 C 0.09 1.19 2.76 -65.78 -0.18 1.01 16 18 H 0.05 0.70 8.02 -51.93 -0.42 0.28 16 19 C -0.15 -1.87 5.93 -90.62 -0.54 -2.41 16 20 C -0.17 -2.43 8.81 -26.73 -0.24 -2.67 16 21 C -0.17 -2.10 9.47 -26.73 -0.25 -2.35 16 22 H 0.26 7.13 6.78 -40.82 -0.28 6.85 16 23 H 0.37 8.92 6.73 -40.82 -0.27 8.65 16 24 H 0.09 1.61 6.24 -51.93 -0.32 1.29 16 25 H 0.04 0.75 7.96 -51.93 -0.41 0.33 16 26 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 27 H 0.09 1.78 7.34 -51.93 -0.38 1.40 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.92 6.48 -51.93 -0.34 0.59 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.12 2.02 5.70 -51.93 -0.30 1.73 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.34 7.23 -51.93 -0.38 0.96 16 LS Contribution 287.55 15.07 4.33 4.33 Total: -1.00 -31.59 287.55 -7.89 -39.47 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.20 Total: 10.21 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.90 Total: -9.15 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.11 Total: -48.76 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.08 Total: -15.60 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.09 Total: 19.49 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.59 -7.89 -39.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.392 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds