Wall clock time and date at job start Sun Mar 29 2020 21:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99949 * 2 1 4 4 H 1.48497 * 109.46950 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46873 * 120.00207 * 3 2 1 6 6 H 1.48498 * 109.47014 * 240.00016 * 3 2 1 7 7 C 1.38944 * 119.99957 * 179.72744 * 2 1 3 8 8 H 1.07997 * 120.00200 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00533 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99576 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00218 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.46837 * 172.29655 * 12 10 9 14 14 C 1.47900 * 111.00212 * 294.94821 * 13 12 10 15 15 C 1.54004 * 107.05839 * 214.15669 * 14 13 12 16 16 C 1.54598 * 105.13769 * 1.22450 * 15 14 13 17 17 C 1.48536 * 110.99587 * 177.54950 * 13 12 10 18 18 H 1.09000 * 110.66710 * 41.29343 * 17 13 12 19 19 C 1.52994 * 110.66802 * 278.15654 * 17 13 12 20 20 C 1.53000 * 117.50098 * 6.18797 * 19 17 13 21 21 C 1.53004 * 117.49873 * 297.56274 * 19 17 13 22 22 H 0.97003 * 120.00118 * 179.97438 * 1 2 3 23 23 H 0.97008 * 119.99678 * 359.97438 * 9 7 2 24 24 H 1.08992 * 109.47132 * 292.30251 * 12 10 9 25 25 H 1.09003 * 109.46699 * 52.29552 * 12 10 9 26 26 H 1.08995 * 109.91892 * 333.50469 * 14 13 12 27 27 H 1.09002 * 109.91974 * 94.80608 * 14 13 12 28 28 H 1.08998 * 110.30655 * 120.13889 * 15 14 13 29 29 H 1.08996 * 110.30644 * 242.30914 * 15 14 13 30 30 H 1.08998 * 110.72502 * 140.31341 * 16 15 14 31 31 H 1.08997 * 110.72388 * 263.42288 * 16 15 14 32 32 H 1.09005 * 115.54858 * 151.89812 * 19 17 13 33 33 H 1.08994 * 117.49580 * 0.02562 * 20 19 17 34 34 H 1.09000 * 117.49517 * 145.01930 * 20 19 17 35 35 H 1.08995 * 117.49847 * 214.97437 * 21 19 17 36 36 H 1.08994 * 117.50209 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7464 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 0.0057 8 1 3.0888 -1.2033 0.0053 9 7 1.3234 -2.3906 0.0119 10 6 1.9972 -3.5579 0.0180 11 8 3.2101 -3.5578 0.0175 12 6 1.2437 -4.8629 0.0254 13 7 2.1874 -5.9742 -0.1546 14 6 2.8232 -5.9188 -1.4888 15 6 3.0465 -7.3731 -1.9436 16 6 2.4716 -8.2453 -0.8039 17 6 1.4868 -7.2825 -0.0939 18 1 0.5392 -7.2368 -0.6307 19 6 1.2663 -7.7101 1.3585 20 6 1.6424 -6.7105 2.4541 21 6 2.5075 -7.9507 2.2202 22 1 -0.4850 -0.8401 -0.0004 23 1 0.3533 -2.3906 0.0127 24 1 0.7247 -4.9774 0.9769 25 1 0.5174 -4.8677 -0.7875 26 1 2.1667 -5.4065 -2.1921 27 1 3.7793 -5.3994 -1.4233 28 1 2.5113 -7.5650 -2.8736 29 1 4.1108 -7.5705 -2.0710 30 1 1.9430 -9.1086 -1.2080 31 1 3.2626 -8.5623 -0.1244 32 1 0.4001 -8.3479 1.5344 33 1 2.0465 -5.7481 2.1401 34 1 1.0234 -6.6905 3.3510 35 1 2.4576 -8.7464 2.9635 36 1 3.4811 -7.8048 1.7524 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609417792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:51 Heat of formation + Delta-G solvation = -24.269497 kcal Electronic energy + Delta-G solvation = -17423.344579 eV Core-core repulsion = 14714.382395 eV Total energy + Delta-G solvation = -2708.962184 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08464 -39.65147 -36.90871 -36.28860 -33.49866 -32.87325 -29.72765 -28.18021 -26.00956 -23.95214 -23.37951 -21.88659 -21.22013 -20.22102 -19.91631 -18.07251 -17.68677 -17.09621 -16.24250 -16.03158 -15.69612 -15.48590 -15.01468 -14.42767 -14.24871 -13.94679 -13.43090 -13.27696 -13.14823 -12.83431 -12.27633 -12.24099 -12.11883 -11.93341 -11.92671 -11.88760 -11.52805 -11.42603 -11.12011 -10.75785 -10.36208 -10.12007 -9.35000 -8.94385 -6.08014 1.51231 1.52889 1.81428 1.99231 2.38049 2.68861 2.94622 3.14910 3.22423 3.71475 3.78430 3.99668 4.04246 4.13785 4.21064 4.23585 4.26659 4.37058 4.45398 4.63494 4.71502 4.81193 4.88954 4.97930 5.07237 5.10624 5.22060 5.29616 5.37534 5.46172 5.58174 5.89332 5.95641 6.07712 6.56638 6.74029 7.42689 7.92012 8.53263 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037662 B = 0.005815 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.268345 B = 4814.352058 C = 5115.315459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.042 4.042 3 Si 1.134 2.866 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.409 4.409 8 H 0.072 0.928 9 N -0.589 5.589 10 C 0.446 3.554 11 O -0.609 6.609 12 C 0.049 3.951 13 N -0.502 5.502 14 C 0.042 3.958 15 C -0.124 4.124 16 C -0.106 4.106 17 C 0.084 3.916 18 H 0.066 0.934 19 C -0.136 4.136 20 C -0.193 4.193 21 C -0.159 4.159 22 H 0.258 0.742 23 H 0.383 0.617 24 H 0.109 0.891 25 H 0.061 0.939 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.713 -16.785 -0.412 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.240 4.240 3 Si 0.954 3.046 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.090 0.910 9 N -0.228 5.228 10 C 0.234 3.766 11 O -0.494 6.494 12 C -0.083 4.083 13 N -0.227 5.227 14 C -0.086 4.086 15 C -0.162 4.162 16 C -0.144 4.144 17 C -0.024 4.024 18 H 0.084 0.916 19 C -0.155 4.155 20 C -0.230 4.230 21 C -0.196 4.196 22 H 0.069 0.931 23 H 0.217 0.783 24 H 0.127 0.873 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.146 0.854 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.305 -15.074 -0.007 15.077 hybrid contribution -0.881 -1.207 -0.593 1.608 sum -0.577 -16.281 -0.600 16.302 Atomic orbital electron populations 1.70971 1.06976 1.29406 1.48241 1.27839 0.96691 1.05302 0.94182 0.82632 0.73814 0.70305 0.77894 1.19567 1.19880 1.19826 1.20504 0.93826 0.85663 1.53872 0.91018 1.42008 1.08506 1.05516 1.66809 1.20726 0.88315 0.85666 0.81926 1.90490 1.15665 1.87762 1.55476 1.21988 0.93823 0.89050 1.03393 1.64347 1.27536 1.00938 1.29832 1.22737 0.99012 0.98252 0.88649 1.22415 1.02357 0.92227 0.99180 1.22507 0.98328 0.97147 0.96383 1.22472 0.96532 0.88222 0.95150 0.91575 1.22268 0.99996 1.03051 0.90148 1.22975 1.04748 0.95295 0.99982 1.22835 0.94985 0.99255 1.02532 0.93089 0.78320 0.87269 0.92079 0.95515 0.93037 0.89925 0.90608 0.88338 0.90573 0.85401 0.90518 0.88542 0.87343 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.13 13.68 21.66 0.30 -51.84 16 2 C -0.04 -2.34 5.50 84.92 0.47 -1.87 16 3 Si 1.13 49.48 29.92 68.60 2.05 51.53 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.41 -24.04 9.68 84.04 0.81 -23.23 16 8 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 9 N -0.59 -31.05 5.28 -306.99 -1.62 -32.67 16 10 C 0.45 22.13 7.43 87.66 0.65 22.78 16 11 O -0.61 -35.08 14.64 -3.06 -0.04 -35.13 16 12 C 0.05 1.80 4.35 85.56 0.37 2.17 16 13 N -0.50 -16.81 3.64 -862.78 -3.14 -19.95 16 14 C 0.04 1.40 5.64 86.45 0.49 1.89 16 15 C -0.12 -2.88 6.93 31.48 0.22 -2.66 16 16 C -0.11 -2.14 6.43 31.80 0.20 -1.94 16 17 C 0.08 2.03 2.76 45.26 0.12 2.16 16 18 H 0.07 1.48 8.02 -2.39 -0.02 1.46 16 19 C -0.14 -2.99 5.93 -10.79 -0.06 -3.05 16 20 C -0.19 -5.18 8.81 30.60 0.27 -4.91 16 21 C -0.16 -3.63 9.47 30.60 0.29 -3.34 16 22 H 0.26 14.25 6.78 -92.71 -0.63 13.63 16 23 H 0.38 18.63 6.73 -92.70 -0.62 18.00 16 24 H 0.11 3.70 6.24 -2.39 -0.01 3.68 16 25 H 0.06 2.03 7.96 -2.39 -0.02 2.02 16 26 H 0.03 0.93 7.65 -2.39 -0.02 0.91 16 27 H 0.05 2.11 7.34 -2.39 -0.02 2.10 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.59 6.48 -2.39 -0.02 1.57 16 32 H 0.13 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.08 2.71 5.70 -2.39 -0.01 2.70 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.14 7.23 -2.39 -0.02 2.12 16 Total: -1.00 -70.34 287.55 1.97 -68.37 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.60 Total: 31.69 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 3.84 Total: -11.99 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -4.47 Total: -104.46 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.04 Total: -35.13 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.05 Total: 51.53 kcal Total: -70.34 1.97 -68.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.096 kcal (2) G-P(sol) polarization free energy of solvation -70.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds